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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707443.1 |
| Preferred name | TAF5 |
| PFAMs | LisH,TFIID_NTD2,WD40 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K03130 |
| KEGG Pathway | ko03022,ko05168,map03022,map05168 |
| GOs | GO:0000123,GO:0000124,GO:0000428,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032182,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0046695,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1903506,GO:1905368,GO:1990234,GO:2000112,GO:2001141 |
| Evalue | 1.28e-47 |
| EggNOG OGs | COG2319@1|root,KOG0263@2759|Eukaryota |
| Description | transcription initiation from RNA polymerase II promoter |
| COG category | Q |
| BRITE | ko00000,ko00001,ko03021,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3960.t1.stop1 | Ggra3960.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000908_pilon 217154..217156 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3960.t1.start1 | Ggra3960.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000908_pilon 219500..219502 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra3960.t1 ID=Ggra3960.t1|Name=Ggra3960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp MNPSQNSQPRRQVAANPVVLSVDQHNPQVARSPAQTVPRVVPSVITIDDD EEGTVRVNAAEKVSSDYLRKHGYVVPEGTISPKRDLAIDHAEVDDEHRNT LMMLQRPELIAAQDTRRFEDSYCELRDWVDGSLDIYKAEFHALLYPLLVH CFLQMIKLKATAEARAFLSRCSAEFREGTASQRRELISLSGIATPQHLEE NEVSNLFLKNRYEVHLSQYAFELLMAFLSDDPRRVVLVRILNMHLAVRID EGIEASRTGGLIVKAKEDRAVESGFVPSKDRNALLRTDVLWGRLRPGHFL IPDEDDTSTKNQKNKQKPTGDKAKQSNDAKAKVDAPKKDVAEEEEEPAVR EDGTLTKSRVPLKKYRLGAKGIETSLDRKNRAKLYDVVTSQGSCDELAIL CYTFTNTHDDGLNCSASSEDGSLVVAGFGDSSLRIWDAKSSNAASVRGGH GMDRLIGHSGPVYTVDWTKCGRFVLSGSEDGSLRLWSADYRTDIFSYKGH NYPVWSAAFSPLDHYFVSGGHDRTARVWSTDCLVPLRIFAGHLADVDCVR WHPNCNYVATGSSDRTARLWDVRDGKCVRVFGTHRGTVHTLAFSPDGRTL ACGGDADTIDIWDIASGKRMRRLSGHSSTVWSLDYSRQGAILASGGADCK VCVWRATDWSSVIQPSEDDTGQNGNGQNGNAQNGNAQNGENVNGKKNGDG VDADGDVRMGGDGNGKADDDESKDKETDEAEEERKEAAKKRSELQRAHGS PLIEAFETKDTPVHSVKFTRKNVLVAIGSFRG* back to topspliced messenger RNA >Ggra3960.t1 ID=Ggra3960.t1|Name=Ggra3960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2349bp|location=Sequence derived from alignment at tig00000908_pilon:217154..219502- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAATCCTTCTCAGAACTCCCAACCCAGGAGACAAGTTGCAGCGAACCC CGTCGTTCTTTCTGTTGACCAGCATAATCCTCAAGTCGCACGCTCCCCGG CACAAACGGTCCCACGCGTTGTTCCCTCTGTGATCACAATAGACGATGAC GAGGAAGGCACTGTGCGCGTCAATGCCGCTGAGAAAGTTTCTTCGGACTA TTTACGCAAACATGGCTACGTAGTGCCCGAGGGCACGATTTCTCCAAAGC GCGACCTCGCAATTGACCATGCTGAGGTTGATGACGAACACCGCAACACG CTCATGATGCTTCAGCGCCCCGAGCTTATAGCTGCTCAAGATACAAGGCG CTTTGAGGACAGCTACTGTGAGCTCCGCGACTGGGTCGACGGAAGCCTCG ACATCTACAAGGCCGAATTTCATGCATTGCTCTACCCGTTGCTTGTGCAC TGTTTTCTTCAGATGATTAAATTGAAAGCAACTGCAGAAGCTAGGGCGTT TCTGTCGCGCTGTTCGGCCGAGTTTCGTGAGGGCACCGCTTCGCAGCGCA GGGAACTTATCTCGTTGTCTGGGATTGCAACACCACAACACCTGGAGGAA AACGAAGTCTCGAATCTCTTTCTAAAGAACCGTTACGAAGTACATCTCTC CCAGTATGCTTTCGAGCTTCTTATGGCGTTTCTCAGTGATGATCCAAGAC GAGTAGTTTTGGTACGGATACTTAATATGCATCTCGCTGTACGAATTGAC GAAGGAATTGAAGCTTCACGCACTGGCGGACTCATTGTTAAAGCAAAAGA AGACCGTGCTGTTGAATCAGGCTTCGTGCCTTCCAAAGATCGAAATGCGC TGTTGCGTACCGACGTGCTATGGGGTCGACTGCGCCCCGGACACTTCTTA ATACCAGATGAAGATGATACTTCCACGAAGAACCAGAAAAACAAACAGAA ACCGACTGGAGATAAAGCCAAGCAGTCGAACGACGCGAAAGCAAAGGTGG ATGCTCCCAAGAAAGATGTCGCTGAGGAGGAGGAAGAACCGGCGGTTCGT GAGGATGGAACCCTCACCAAATCAAGAGTCCCGCTGAAGAAGTACCGCTT GGGGGCAAAAGGTATTGAAACGTCACTGGATCGAAAGAACCGTGCGAAGC TGTACGACGTCGTGACGTCGCAAGGCAGCTGTGACGAACTTGCGATTCTG TGCTATACATTTACGAACACACATGATGACGGCCTTAACTGTTCGGCTTC CTCAGAAGATGGGTCATTGGTGGTGGCTGGGTTCGGTGACTCGTCTTTGC GGATATGGGATGCAAAGAGCTCGAATGCAGCAAGTGTCCGAGGCGGGCAT GGAATGGATCGGCTTATTGGACATTCTGGACCTGTGTATACGGTAGACTG GACGAAATGTGGACGTTTCGTCCTGAGTGGATCCGAAGACGGTAGTCTAC GATTGTGGTCTGCGGATTACCGAACGGACATTTTTTCCTACAAGGGTCAT AACTATCCTGTATGGAGTGCAGCTTTCTCTCCCCTTGACCACTACTTTGT CAGTGGTGGACACGATCGCACAGCACGCGTATGGAGCACAGATTGCCTGG TTCCGCTGCGGATTTTCGCGGGACATCTAGCAGATGTGGACTGCGTGCGG TGGCATCCTAACTGTAACTATGTGGCGACCGGATCAAGCGACCGTACGGC GCGCTTATGGGATGTGCGGGACGGCAAGTGTGTTCGCGTTTTCGGAACGC ACCGCGGTACGGTTCATACTTTGGCGTTCTCCCCTGACGGGCGTACTTTG GCGTGTGGTGGAGACGCTGATACGATTGACATCTGGGATATCGCCAGCGG GAAACGTATGCGTCGCTTAAGCGGACATTCGTCTACAGTGTGGTCTCTTG ATTACTCGCGTCAAGGGGCGATTCTGGCATCAGGGGGAGCCGATTGCAAG GTATGCGTGTGGCGAGCAACAGATTGGTCAAGCGTGATCCAGCCGAGCGA GGACGACACAGGGCAGAACGGAAATGGGCAAAACGGCAATGCGCAGAACG GAAACGCGCAGAATGGGGAGAATGTCAATGGGAAGAAAAATGGCGACGGC GTGGACGCGGATGGCGACGTGCGAATGGGTGGGGACGGAAACGGCAAGGC AGACGACGATGAAAGTAAGGACAAGGAGACCGACGAGGCGGAAGAAGAAC GCAAGGAAGCGGCGAAGAAGCGCTCCGAACTGCAGCGAGCACACGGGTCG CCCCTAATCGAGGCGTTCGAAACGAAAGATACACCGGTGCACTCGGTCAA GTTCACGCGCAAGAACGTGTTGGTTGCGATCGGCAGTTTTCGTGGGTAG back to topprotein sequence of Ggra3960.t1 >Ggra3960.t1 ID=Ggra3960.t1|Name=Ggra3960.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=783bp
MNPSQNSQPRRQVAANPVVLSVDQHNPQVARSPAQTVPRVVPSVITIDDD EEGTVRVNAAEKVSSDYLRKHGYVVPEGTISPKRDLAIDHAEVDDEHRNT LMMLQRPELIAAQDTRRFEDSYCELRDWVDGSLDIYKAEFHALLYPLLVH CFLQMIKLKATAEARAFLSRCSAEFREGTASQRRELISLSGIATPQHLEE NEVSNLFLKNRYEVHLSQYAFELLMAFLSDDPRRVVLVRILNMHLAVRID EGIEASRTGGLIVKAKEDRAVESGFVPSKDRNALLRTDVLWGRLRPGHFL IPDEDDTSTKNQKNKQKPTGDKAKQSNDAKAKVDAPKKDVAEEEEEPAVR EDGTLTKSRVPLKKYRLGAKGIETSLDRKNRAKLYDVVTSQGSCDELAIL CYTFTNTHDDGLNCSASSEDGSLVVAGFGDSSLRIWDAKSSNAASVRGGH GMDRLIGHSGPVYTVDWTKCGRFVLSGSEDGSLRLWSADYRTDIFSYKGH NYPVWSAAFSPLDHYFVSGGHDRTARVWSTDCLVPLRIFAGHLADVDCVR WHPNCNYVATGSSDRTARLWDVRDGKCVRVFGTHRGTVHTLAFSPDGRTL ACGGDADTIDIWDIASGKRMRRLSGHSSTVWSLDYSRQGAILASGGADCK VCVWRATDWSSVIQPSEDDTGQNGNGQNGNAQNGNAQNGENVNGKKNGDG VDADGDVRMGGDGNGKADDDESKDKETDEAEEERKEAAKKRSELQRAHGS PLIEAFETKDTPVHSVKFTRKNVLVAIGSFRG* back to topmRNA from alignment at tig00000908_pilon:217154..219502- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra3960.t1 ID=Ggra3960.t1|Name=Ggra3960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2349bp|location=Sequence derived from alignment at tig00000908_pilon:217154..219502- (Gracilaria gracilis GNS1m male) ATGAATCCTTCTCAGAACTCCCAACCCAGGAGACAAGTTGCAGCGAACCC
CGTCGTTCTTTCTGTTGACCAGCATAATCCTCAAGTCGCACGCTCCCCGG
CACAAACGGTCCCACGCGTTGTTCCCTCTGTGATCACAATAGACGATGAC
GAGGAAGGCACTGTGCGCGTCAATGCCGCTGAGAAAGTTTCTTCGGACTA
TTTACGCAAACATGGCTACGTAGTGCCCGAGGGCACGATTTCTCCAAAGC
GCGACCTCGCAATTGACCATGCTGAGGTTGATGACGAACACCGCAACACG
CTCATGATGCTTCAGCGCCCCGAGCTTATAGCTGCTCAAGATACAAGGCG
CTTTGAGGACAGCTACTGTGAGCTCCGCGACTGGGTCGACGGAAGCCTCG
ACATCTACAAGGCCGAATTTCATGCATTGCTCTACCCGTTGCTTGTGCAC
TGTTTTCTTCAGATGATTAAATTGAAAGCAACTGCAGAAGCTAGGGCGTT
TCTGTCGCGCTGTTCGGCCGAGTTTCGTGAGGGCACCGCTTCGCAGCGCA
GGGAACTTATCTCGTTGTCTGGGATTGCAACACCACAACACCTGGAGGAA
AACGAAGTCTCGAATCTCTTTCTAAAGAACCGTTACGAAGTACATCTCTC
CCAGTATGCTTTCGAGCTTCTTATGGCGTTTCTCAGTGATGATCCAAGAC
GAGTAGTTTTGGTACGGATACTTAATATGCATCTCGCTGTACGAATTGAC
GAAGGAATTGAAGCTTCACGCACTGGCGGACTCATTGTTAAAGCAAAAGA
AGACCGTGCTGTTGAATCAGGCTTCGTGCCTTCCAAAGATCGAAATGCGC
TGTTGCGTACCGACGTGCTATGGGGTCGACTGCGCCCCGGACACTTCTTA
ATACCAGATGAAGATGATACTTCCACGAAGAACCAGAAAAACAAACAGAA
ACCGACTGGAGATAAAGCCAAGCAGTCGAACGACGCGAAAGCAAAGGTGG
ATGCTCCCAAGAAAGATGTCGCTGAGGAGGAGGAAGAACCGGCGGTTCGT
GAGGATGGAACCCTCACCAAATCAAGAGTCCCGCTGAAGAAGTACCGCTT
GGGGGCAAAAGGTATTGAAACGTCACTGGATCGAAAGAACCGTGCGAAGC
TGTACGACGTCGTGACGTCGCAAGGCAGCTGTGACGAACTTGCGATTCTG
TGCTATACATTTACGAACACACATGATGACGGCCTTAACTGTTCGGCTTC
CTCAGAAGATGGGTCATTGGTGGTGGCTGGGTTCGGTGACTCGTCTTTGC
GGATATGGGATGCAAAGAGCTCGAATGCAGCAAGTGTCCGAGGCGGGCAT
GGAATGGATCGGCTTATTGGACATTCTGGACCTGTGTATACGGTAGACTG
GACGAAATGTGGACGTTTCGTCCTGAGTGGATCCGAAGACGGTAGTCTAC
GATTGTGGTCTGCGGATTACCGAACGGACATTTTTTCCTACAAGGGTCAT
AACTATCCTGTATGGAGTGCAGCTTTCTCTCCCCTTGACCACTACTTTGT
CAGTGGTGGACACGATCGCACAGCACGCGTATGGAGCACAGATTGCCTGG
TTCCGCTGCGGATTTTCGCGGGACATCTAGCAGATGTGGACTGCGTGCGG
TGGCATCCTAACTGTAACTATGTGGCGACCGGATCAAGCGACCGTACGGC
GCGCTTATGGGATGTGCGGGACGGCAAGTGTGTTCGCGTTTTCGGAACGC
ACCGCGGTACGGTTCATACTTTGGCGTTCTCCCCTGACGGGCGTACTTTG
GCGTGTGGTGGAGACGCTGATACGATTGACATCTGGGATATCGCCAGCGG
GAAACGTATGCGTCGCTTAAGCGGACATTCGTCTACAGTGTGGTCTCTTG
ATTACTCGCGTCAAGGGGCGATTCTGGCATCAGGGGGAGCCGATTGCAAG
GTATGCGTGTGGCGAGCAACAGATTGGTCAAGCGTGATCCAGCCGAGCGA
GGACGACACAGGGCAGAACGGAAATGGGCAAAACGGCAATGCGCAGAACG
GAAACGCGCAGAATGGGGAGAATGTCAATGGGAAGAAAAATGGCGACGGC
GTGGACGCGGATGGCGACGTGCGAATGGGTGGGGACGGAAACGGCAAGGC
AGACGACGATGAAAGTAAGGACAAGGAGACCGACGAGGCGGAAGAAGAAC
GCAAGGAAGCGGCGAAGAAGCGCTCCGAACTGCAGCGAGCACACGGGTCG
CCCCTAATCGAGGCGTTCGAAACGAAAGATACACCGGTGCACTCGGTCAA
GTTCACGCGCAAGAACGTGTTGGTTGCGATCGGCAGTTTTCGTGGGTAG back to topCoding sequence (CDS) from alignment at tig00000908_pilon:217154..219502- >Ggra3960.t1 ID=Ggra3960.t1|Name=Ggra3960.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2349bp|location=Sequence derived from alignment at tig00000908_pilon:217154..219502- (Gracilaria gracilis GNS1m male) ATGAATCCTTCTCAGAACTCCCAACCCAGGAGACAAGTTGCAGCGAACCC CGTCGTTCTTTCTGTTGACCAGCATAATCCTCAAGTCGCACGCTCCCCGG CACAAACGGTCCCACGCGTTGTTCCCTCTGTGATCACAATAGACGATGAC GAGGAAGGCACTGTGCGCGTCAATGCCGCTGAGAAAGTTTCTTCGGACTA TTTACGCAAACATGGCTACGTAGTGCCCGAGGGCACGATTTCTCCAAAGC GCGACCTCGCAATTGACCATGCTGAGGTTGATGACGAACACCGCAACACG CTCATGATGCTTCAGCGCCCCGAGCTTATAGCTGCTCAAGATACAAGGCG CTTTGAGGACAGCTACTGTGAGCTCCGCGACTGGGTCGACGGAAGCCTCG ACATCTACAAGGCCGAATTTCATGCATTGCTCTACCCGTTGCTTGTGCAC TGTTTTCTTCAGATGATTAAATTGAAAGCAACTGCAGAAGCTAGGGCGTT TCTGTCGCGCTGTTCGGCCGAGTTTCGTGAGGGCACCGCTTCGCAGCGCA GGGAACTTATCTCGTTGTCTGGGATTGCAACACCACAACACCTGGAGGAA AACGAAGTCTCGAATCTCTTTCTAAAGAACCGTTACGAAGTACATCTCTC CCAGTATGCTTTCGAGCTTCTTATGGCGTTTCTCAGTGATGATCCAAGAC GAGTAGTTTTGGTACGGATACTTAATATGCATCTCGCTGTACGAATTGAC GAAGGAATTGAAGCTTCACGCACTGGCGGACTCATTGTTAAAGCAAAAGA AGACCGTGCTGTTGAATCAGGCTTCGTGCCTTCCAAAGATCGAAATGCGC TGTTGCGTACCGACGTGCTATGGGGTCGACTGCGCCCCGGACACTTCTTA ATACCAGATGAAGATGATACTTCCACGAAGAACCAGAAAAACAAACAGAA ACCGACTGGAGATAAAGCCAAGCAGTCGAACGACGCGAAAGCAAAGGTGG ATGCTCCCAAGAAAGATGTCGCTGAGGAGGAGGAAGAACCGGCGGTTCGT GAGGATGGAACCCTCACCAAATCAAGAGTCCCGCTGAAGAAGTACCGCTT GGGGGCAAAAGGTATTGAAACGTCACTGGATCGAAAGAACCGTGCGAAGC TGTACGACGTCGTGACGTCGCAAGGCAGCTGTGACGAACTTGCGATTCTG TGCTATACATTTACGAACACACATGATGACGGCCTTAACTGTTCGGCTTC CTCAGAAGATGGGTCATTGGTGGTGGCTGGGTTCGGTGACTCGTCTTTGC GGATATGGGATGCAAAGAGCTCGAATGCAGCAAGTGTCCGAGGCGGGCAT GGAATGGATCGGCTTATTGGACATTCTGGACCTGTGTATACGGTAGACTG GACGAAATGTGGACGTTTCGTCCTGAGTGGATCCGAAGACGGTAGTCTAC GATTGTGGTCTGCGGATTACCGAACGGACATTTTTTCCTACAAGGGTCAT AACTATCCTGTATGGAGTGCAGCTTTCTCTCCCCTTGACCACTACTTTGT CAGTGGTGGACACGATCGCACAGCACGCGTATGGAGCACAGATTGCCTGG TTCCGCTGCGGATTTTCGCGGGACATCTAGCAGATGTGGACTGCGTGCGG TGGCATCCTAACTGTAACTATGTGGCGACCGGATCAAGCGACCGTACGGC GCGCTTATGGGATGTGCGGGACGGCAAGTGTGTTCGCGTTTTCGGAACGC ACCGCGGTACGGTTCATACTTTGGCGTTCTCCCCTGACGGGCGTACTTTG GCGTGTGGTGGAGACGCTGATACGATTGACATCTGGGATATCGCCAGCGG GAAACGTATGCGTCGCTTAAGCGGACATTCGTCTACAGTGTGGTCTCTTG ATTACTCGCGTCAAGGGGCGATTCTGGCATCAGGGGGAGCCGATTGCAAG GTATGCGTGTGGCGAGCAACAGATTGGTCAAGCGTGATCCAGCCGAGCGA GGACGACACAGGGCAGAACGGAAATGGGCAAAACGGCAATGCGCAGAACG GAAACGCGCAGAATGGGGAGAATGTCAATGGGAAGAAAAATGGCGACGGC GTGGACGCGGATGGCGACGTGCGAATGGGTGGGGACGGAAACGGCAAGGC AGACGACGATGAAAGTAAGGACAAGGAGACCGACGAGGCGGAAGAAGAAC GCAAGGAAGCGGCGAAGAAGCGCTCCGAACTGCAGCGAGCACACGGGTCG CCCCTAATCGAGGCGTTCGAAACGAAAGATACACCGGTGCACTCGGTCAA GTTCACGCGCAAGAACGTGTTGGTTGCGATCGGCAGTTTTCGTGGGTAG back to top
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