Ggra3956.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3956.t1
Unique Name	Ggra3956.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	611

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:209722..211554 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708686.1
PFAMs	EMP70
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17086
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005911,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016021,GO:0030054,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0050789,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0055044,GO:0060341,GO:0065007,GO:0070201,GO:0070861,GO:0070863,GO:0090087,GO:0090316,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1903827,GO:1903829,GO:1904951,GO:2000008,GO:2000010
Evalue	2.87e-189
EggNOG OGs	KOG1278@1\|root,KOG1278@2759\|Eukaryota
Description	positive regulation of protein exit from endoplasmic reticulum
COG category	S
BRITE	ko00000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3956	Ggra3956	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 209722..211554 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3956.t1.start1	Ggra3956.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 209722..209724 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3956.t1.CDS1	Ggra3956.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 209722..211554 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3956.t1.exon1	Ggra3956.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 209722..211554 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3956.t1.stop1	Ggra3956.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 211552..211554 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3956.t1	Ggra3956.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 209722..211554 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:209722..211554+
coding sequence from alignment at tig00000908_pilon:209722..211554+

mRNA sequence

>Ggra3956.t1 ID=Ggra3956.t1|Name=Ggra3956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=611bp
MKDYSVGEPVEVLANRLTSPTSTLPFPYYSIPLCRPAKRVRSRSVNLGQI
LLGERAFPTAFNITMMNNVKCVHMCTVQLSKVSRRGVKNLVSRITENYSA
RLHTDNMPLITRYLTNTGRSAFRFGYPLGFTSGDKVYINNHLTLKILYHK
PSLEAGEAFDALTASEKYRVVGFEVQPASMVHKLGSDGSIKSCRSAQDAA
PMQVKDDSDIPFTYDVQFEESEIAWATRWDPLLNAATEIKEIQWFSITNS
LMVSLFLSAIVATVMLRTVLKDFGRYNAIVDDDEETEMTGWKNIHGDVFR
PPKYATLLSICVGSGAQVFVMAALTQAFALFGFLSPANRGGLLTALLTMW
VLASSVSGYFTARIYSALDTGVSRRVVTFGTALLFPGITFGIFFALNLVM
WSVGSSGSVPFTTLLLLLFMWFGISVPLVFAGAFAGYRHKTLEFPTRTHQ
IRRQIPPPPLGLSPFVYSALAGVLPFGTVFMELVFVLNSVSSDSVYYLYG
AMVAVFIILVITCAELSIVSTYLSLSAEDWKSHWHTSFIGCASAGLYVFL
YSLYFAQSQPHSNRVPLVSRIVYMCWSLVMSGAFALMCGAIGFLSSLWFT
RKIYASIRID*

spliced messenger RNA

>Ggra3956.t1 ID=Ggra3956.t1|Name=Ggra3956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00000908_pilon:209722..211554+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATTATAGTGTCGGCGAGCCTGTTGAGGTTCTTGCGAATAGGCT
CACTTCCCCCACAAGCACTTTGCCGTTCCCCTACTATAGTATCCCACTAT
GTAGGCCTGCAAAACGAGTTCGTTCTCGATCCGTCAATCTAGGACAAATT
CTTCTTGGAGAGCGGGCGTTTCCAACCGCCTTCAATATAACTATGATGAA
CAACGTCAAATGTGTTCATATGTGCACAGTGCAGCTGAGCAAGGTCTCAC
GTCGTGGCGTAAAGAACCTCGTGTCCAGAATCACCGAGAACTATTCTGCT
CGCTTACATACTGATAACATGCCGCTTATCACTCGTTATTTAACCAATAC
AGGCCGATCCGCTTTTCGATTCGGATATCCTCTTGGCTTCACATCCGGTG
ACAAGGTGTACATTAACAATCACCTCACGCTTAAGATTCTCTATCACAAG
CCCTCTTTAGAGGCAGGAGAAGCATTTGACGCGCTCACTGCTAGTGAAAA
GTATCGAGTCGTTGGTTTCGAGGTTCAACCGGCTTCAATGGTCCATAAGC
TTGGCAGTGATGGTTCCATAAAGTCCTGTAGATCAGCTCAAGATGCCGCC
CCAATGCAGGTCAAAGATGATTCTGATATTCCTTTTACATATGACGTGCA
GTTTGAGGAATCTGAGATTGCCTGGGCTACCAGATGGGACCCACTTCTCA
ATGCTGCCACAGAGATCAAAGAGATTCAATGGTTTTCTATTACAAACTCC
TTAATGGTGTCCTTGTTTTTGTCAGCAATTGTCGCAACCGTCATGTTGCG
TACTGTTCTCAAAGACTTTGGACGGTATAACGCTATCGTGGATGATGATG
AGGAGACTGAAATGACAGGTTGGAAGAATATTCATGGCGACGTTTTCCGT
CCACCCAAGTACGCTACACTTCTTTCCATTTGTGTCGGCTCCGGAGCACA
AGTTTTCGTTATGGCTGCTTTGACACAGGCCTTTGCTCTATTTGGATTCC
TTTCACCTGCGAACAGAGGAGGGCTTCTTACTGCTCTTCTAACCATGTGG
GTTTTGGCATCGTCGGTATCCGGATACTTCACCGCTCGAATCTACTCAGC
TCTCGATACCGGAGTTTCTAGAAGGGTTGTTACTTTTGGAACTGCTCTCC
TCTTCCCAGGTATCACTTTTGGGATCTTCTTCGCTCTCAACCTCGTAATG
TGGTCAGTTGGCTCATCCGGTAGTGTCCCATTCACTACTCTGCTCCTTTT
GCTGTTTATGTGGTTCGGTATATCTGTACCTCTTGTATTTGCGGGTGCAT
TTGCTGGTTACCGGCACAAAACCTTGGAATTCCCTACAAGAACTCATCAA
ATACGGAGACAGATTCCTCCTCCTCCACTCGGCTTATCTCCATTTGTGTA
TTCTGCGCTCGCCGGTGTTCTGCCATTCGGTACAGTTTTCATGGAACTGG
TTTTCGTTCTCAACTCTGTCTCAAGCGATAGTGTCTATTATTTGTACGGA
GCCATGGTTGCAGTGTTCATAATTCTCGTCATTACCTGCGCTGAACTAAG
CATTGTATCAACATATTTATCTCTTTCTGCAGAGGACTGGAAGAGCCACT
GGCACACTTCGTTCATAGGATGTGCTTCGGCAGGATTGTATGTATTTCTG
TACAGTCTGTATTTTGCCCAATCCCAACCACATAGCAATCGTGTTCCTCT
TGTGAGCCGAATCGTATATATGTGCTGGAGCTTGGTGATGAGTGGGGCGT
TCGCTCTGATGTGTGGAGCAATAGGATTTCTTTCCTCACTATGGTTTACA
CGGAAGATATATGCATCTATTCGAATAGACTAA

protein sequence of Ggra3956.t1

>Ggra3956.t1 ID=Ggra3956.t1|Name=Ggra3956.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=611bp
MKDYSVGEPVEVLANRLTSPTSTLPFPYYSIPLCRPAKRVRSRSVNLGQI
LLGERAFPTAFNITMMNNVKCVHMCTVQLSKVSRRGVKNLVSRITENYSA
RLHTDNMPLITRYLTNTGRSAFRFGYPLGFTSGDKVYINNHLTLKILYHK
PSLEAGEAFDALTASEKYRVVGFEVQPASMVHKLGSDGSIKSCRSAQDAA
PMQVKDDSDIPFTYDVQFEESEIAWATRWDPLLNAATEIKEIQWFSITNS
LMVSLFLSAIVATVMLRTVLKDFGRYNAIVDDDEETEMTGWKNIHGDVFR
PPKYATLLSICVGSGAQVFVMAALTQAFALFGFLSPANRGGLLTALLTMW
VLASSVSGYFTARIYSALDTGVSRRVVTFGTALLFPGITFGIFFALNLVM
WSVGSSGSVPFTTLLLLLFMWFGISVPLVFAGAFAGYRHKTLEFPTRTHQ
IRRQIPPPPLGLSPFVYSALAGVLPFGTVFMELVFVLNSVSSDSVYYLYG
AMVAVFIILVITCAELSIVSTYLSLSAEDWKSHWHTSFIGCASAGLYVFL
YSLYFAQSQPHSNRVPLVSRIVYMCWSLVMSGAFALMCGAIGFLSSLWFT
RKIYASIRID*

mRNA from alignment at tig00000908_pilon:209722..211554+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3956.t1 ID=Ggra3956.t1|Name=Ggra3956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00000908_pilon:209722..211554+ (Gracilaria gracilis GNS1m male)
ATGAAGGATTATAGTGTCGGCGAGCCTGTTGAGGTTCTTGCGAATAGGCT
CACTTCCCCCACAAGCACTTTGCCGTTCCCCTACTATAGTATCCCACTAT
GTAGGCCTGCAAAACGAGTTCGTTCTCGATCCGTCAATCTAGGACAAATT
CTTCTTGGAGAGCGGGCGTTTCCAACCGCCTTCAATATAACTATGATGAA
CAACGTCAAATGTGTTCATATGTGCACAGTGCAGCTGAGCAAGGTCTCAC
GTCGTGGCGTAAAGAACCTCGTGTCCAGAATCACCGAGAACTATTCTGCT
CGCTTACATACTGATAACATGCCGCTTATCACTCGTTATTTAACCAATAC
AGGCCGATCCGCTTTTCGATTCGGATATCCTCTTGGCTTCACATCCGGTG
ACAAGGTGTACATTAACAATCACCTCACGCTTAAGATTCTCTATCACAAG
CCCTCTTTAGAGGCAGGAGAAGCATTTGACGCGCTCACTGCTAGTGAAAA
GTATCGAGTCGTTGGTTTCGAGGTTCAACCGGCTTCAATGGTCCATAAGC
TTGGCAGTGATGGTTCCATAAAGTCCTGTAGATCAGCTCAAGATGCCGCC
CCAATGCAGGTCAAAGATGATTCTGATATTCCTTTTACATATGACGTGCA
GTTTGAGGAATCTGAGATTGCCTGGGCTACCAGATGGGACCCACTTCTCA
ATGCTGCCACAGAGATCAAAGAGATTCAATGGTTTTCTATTACAAACTCC
TTAATGGTGTCCTTGTTTTTGTCAGCAATTGTCGCAACCGTCATGTTGCG
TACTGTTCTCAAAGACTTTGGACGGTATAACGCTATCGTGGATGATGATG
AGGAGACTGAAATGACAGGTTGGAAGAATATTCATGGCGACGTTTTCCGT
CCACCCAAGTACGCTACACTTCTTTCCATTTGTGTCGGCTCCGGAGCACA
AGTTTTCGTTATGGCTGCTTTGACACAGGCCTTTGCTCTATTTGGATTCC
TTTCACCTGCGAACAGAGGAGGGCTTCTTACTGCTCTTCTAACCATGTGG
GTTTTGGCATCGTCGGTATCCGGATACTTCACCGCTCGAATCTACTCAGC
TCTCGATACCGGAGTTTCTAGAAGGGTTGTTACTTTTGGAACTGCTCTCC
TCTTCCCAGGTATCACTTTTGGGATCTTCTTCGCTCTCAACCTCGTAATG
TGGTCAGTTGGCTCATCCGGTAGTGTCCCATTCACTACTCTGCTCCTTTT
GCTGTTTATGTGGTTCGGTATATCTGTACCTCTTGTATTTGCGGGTGCAT
TTGCTGGTTACCGGCACAAAACCTTGGAATTCCCTACAAGAACTCATCAA
ATACGGAGACAGATTCCTCCTCCTCCACTCGGCTTATCTCCATTTGTGTA
TTCTGCGCTCGCCGGTGTTCTGCCATTCGGTACAGTTTTCATGGAACTGG
TTTTCGTTCTCAACTCTGTCTCAAGCGATAGTGTCTATTATTTGTACGGA
GCCATGGTTGCAGTGTTCATAATTCTCGTCATTACCTGCGCTGAACTAAG
CATTGTATCAACATATTTATCTCTTTCTGCAGAGGACTGGAAGAGCCACT
GGCACACTTCGTTCATAGGATGTGCTTCGGCAGGATTGTATGTATTTCTG
TACAGTCTGTATTTTGCCCAATCCCAACCACATAGCAATCGTGTTCCTCT
TGTGAGCCGAATCGTATATATGTGCTGGAGCTTGGTGATGAGTGGGGCGT
TCGCTCTGATGTGTGGAGCAATAGGATTTCTTTCCTCACTATGGTTTACA
CGGAAGATATATGCATCTATTCGAATAGACTAA

Coding sequence (CDS) from alignment at tig00000908_pilon:209722..211554+

>Ggra3956.t1 ID=Ggra3956.t1|Name=Ggra3956.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1833bp|location=Sequence derived from alignment at tig00000908_pilon:209722..211554+ (Gracilaria gracilis GNS1m male)
ATGAAGGATTATAGTGTCGGCGAGCCTGTTGAGGTTCTTGCGAATAGGCT
CACTTCCCCCACAAGCACTTTGCCGTTCCCCTACTATAGTATCCCACTAT
GTAGGCCTGCAAAACGAGTTCGTTCTCGATCCGTCAATCTAGGACAAATT
CTTCTTGGAGAGCGGGCGTTTCCAACCGCCTTCAATATAACTATGATGAA
CAACGTCAAATGTGTTCATATGTGCACAGTGCAGCTGAGCAAGGTCTCAC
GTCGTGGCGTAAAGAACCTCGTGTCCAGAATCACCGAGAACTATTCTGCT
CGCTTACATACTGATAACATGCCGCTTATCACTCGTTATTTAACCAATAC
AGGCCGATCCGCTTTTCGATTCGGATATCCTCTTGGCTTCACATCCGGTG
ACAAGGTGTACATTAACAATCACCTCACGCTTAAGATTCTCTATCACAAG
CCCTCTTTAGAGGCAGGAGAAGCATTTGACGCGCTCACTGCTAGTGAAAA
GTATCGAGTCGTTGGTTTCGAGGTTCAACCGGCTTCAATGGTCCATAAGC
TTGGCAGTGATGGTTCCATAAAGTCCTGTAGATCAGCTCAAGATGCCGCC
CCAATGCAGGTCAAAGATGATTCTGATATTCCTTTTACATATGACGTGCA
GTTTGAGGAATCTGAGATTGCCTGGGCTACCAGATGGGACCCACTTCTCA
ATGCTGCCACAGAGATCAAAGAGATTCAATGGTTTTCTATTACAAACTCC
TTAATGGTGTCCTTGTTTTTGTCAGCAATTGTCGCAACCGTCATGTTGCG
TACTGTTCTCAAAGACTTTGGACGGTATAACGCTATCGTGGATGATGATG
AGGAGACTGAAATGACAGGTTGGAAGAATATTCATGGCGACGTTTTCCGT
CCACCCAAGTACGCTACACTTCTTTCCATTTGTGTCGGCTCCGGAGCACA
AGTTTTCGTTATGGCTGCTTTGACACAGGCCTTTGCTCTATTTGGATTCC
TTTCACCTGCGAACAGAGGAGGGCTTCTTACTGCTCTTCTAACCATGTGG
GTTTTGGCATCGTCGGTATCCGGATACTTCACCGCTCGAATCTACTCAGC
TCTCGATACCGGAGTTTCTAGAAGGGTTGTTACTTTTGGAACTGCTCTCC
TCTTCCCAGGTATCACTTTTGGGATCTTCTTCGCTCTCAACCTCGTAATG
TGGTCAGTTGGCTCATCCGGTAGTGTCCCATTCACTACTCTGCTCCTTTT
GCTGTTTATGTGGTTCGGTATATCTGTACCTCTTGTATTTGCGGGTGCAT
TTGCTGGTTACCGGCACAAAACCTTGGAATTCCCTACAAGAACTCATCAA
ATACGGAGACAGATTCCTCCTCCTCCACTCGGCTTATCTCCATTTGTGTA
TTCTGCGCTCGCCGGTGTTCTGCCATTCGGTACAGTTTTCATGGAACTGG
TTTTCGTTCTCAACTCTGTCTCAAGCGATAGTGTCTATTATTTGTACGGA
GCCATGGTTGCAGTGTTCATAATTCTCGTCATTACCTGCGCTGAACTAAG
CATTGTATCAACATATTTATCTCTTTCTGCAGAGGACTGGAAGAGCCACT
GGCACACTTCGTTCATAGGATGTGCTTCGGCAGGATTGTATGTATTTCTG
TACAGTCTGTATTTTGCCCAATCCCAACCACATAGCAATCGTGTTCCTCT
TGTGAGCCGAATCGTATATATGTGCTGGAGCTTGGTGATGAGTGGGGCGT
TCGCTCTGATGTGTGGAGCAATAGGATTTCTTTCCTCACTATGGTTTACA
CGGAAGATATATGCATCTATTCGAATAGACTAA