Ggra3953.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3953.t1
Unique NameGgra3953.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:201451..202158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5911.EAR83692
PFAMsLipocalin_2
Max annot lvl5878|Ciliophora
KEGG koko:K03098
Evalue4.83e-05
EggNOG OGsCOG3040@1|root,KOG4824@2759|Eukaryota,3ZEGC@5878|Ciliophora
DescriptionBelongs to the calycin superfamily. Lipocalin family
COG categoryM
BRITEko00000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3953Ggra3953Gracilaria gracilis GNS1m malegenetig00000908_pilon 201451..202158 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3953.t1.stop1Ggra3953.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 201451..201453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3953.t1.CDS1Ggra3953.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 201451..202158 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3953.t1.exon1Ggra3953.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 201451..202158 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3953.t1.start1Ggra3953.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 202156..202158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3953.t1Ggra3953.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 201451..202158 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3953.t1 ID=Ggra3953.t1|Name=Ggra3953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=236bp
MKVGILVSLLFVPSIYAFSLTPENPNIPETCSPVEKNPPSDPFCVDPPVV
PVDRPLYTGTWFLTYVSGSAKQFSSDPCTTANYTLNAEGNIDVLNCAVRR
PGGIPSCVRAVASQRPNTTASGKLSVSFPNAPRDVFNPGQYSVAALLGFP
GIGYIAAAVYQCGNVPGVGNSPGFYLLSRTLYARELILYLMKLVLKCRGY
DVNVDFQKVDHGRCNYFFDPSGFTEFDPSMFAPPF*
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spliced messenger RNA

>Ggra3953.t1 ID=Ggra3953.t1|Name=Ggra3953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000908_pilon:201451..202158- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTTGGTATACTGGTCTCGTTGCTCTTTGTCCCAAGCATCTACGC
CTTCTCACTCACTCCCGAAAACCCAAACATCCCGGAAACATGTTCGCCGG
TTGAGAAAAACCCACCGTCGGACCCATTCTGTGTCGACCCGCCAGTGGTT
CCAGTCGACCGCCCCCTGTACACAGGCACATGGTTTCTGACCTATGTATC
AGGAAGTGCCAAGCAATTTTCCTCTGATCCATGCACAACTGCCAACTACA
CCCTAAACGCTGAAGGAAATATAGACGTTTTGAACTGCGCCGTGAGAAGA
CCGGGTGGCATTCCATCCTGCGTTCGTGCCGTAGCTTCCCAAAGACCAAA
CACAACCGCTTCTGGAAAGTTGTCTGTGTCATTTCCCAATGCACCAAGAG
ATGTCTTCAATCCTGGGCAATACAGCGTGGCGGCGTTGTTGGGATTCCCT
GGAATCGGTTACATAGCCGCGGCCGTTTATCAGTGTGGTAATGTACCTGG
TGTTGGTAACTCGCCTGGATTCTATCTTCTTTCTAGAACGCTGTATGCGA
GAGAATTGATTCTGTATTTGATGAAGTTGGTGTTGAAGTGTCGGGGTTAT
GATGTTAACGTCGACTTTCAGAAAGTTGACCACGGCCGTTGTAATTACTT
TTTCGACCCGTCCGGCTTCACTGAATTTGATCCCTCAATGTTCGCACCGC
CCTTTTAA
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protein sequence of Ggra3953.t1

>Ggra3953.t1 ID=Ggra3953.t1|Name=Ggra3953.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=236bp
MKVGILVSLLFVPSIYAFSLTPENPNIPETCSPVEKNPPSDPFCVDPPVV
PVDRPLYTGTWFLTYVSGSAKQFSSDPCTTANYTLNAEGNIDVLNCAVRR
PGGIPSCVRAVASQRPNTTASGKLSVSFPNAPRDVFNPGQYSVAALLGFP
GIGYIAAAVYQCGNVPGVGNSPGFYLLSRTLYARELILYLMKLVLKCRGY
DVNVDFQKVDHGRCNYFFDPSGFTEFDPSMFAPPF*
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mRNA from alignment at tig00000908_pilon:201451..202158-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3953.t1 ID=Ggra3953.t1|Name=Ggra3953.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp|location=Sequence derived from alignment at tig00000908_pilon:201451..202158- (Gracilaria gracilis GNS1m male)
ATGAAGGTTGGTATACTGGTCTCGTTGCTCTTTGTCCCAAGCATCTACGC
CTTCTCACTCACTCCCGAAAACCCAAACATCCCGGAAACATGTTCGCCGG
TTGAGAAAAACCCACCGTCGGACCCATTCTGTGTCGACCCGCCAGTGGTT
CCAGTCGACCGCCCCCTGTACACAGGCACATGGTTTCTGACCTATGTATC
AGGAAGTGCCAAGCAATTTTCCTCTGATCCATGCACAACTGCCAACTACA
CCCTAAACGCTGAAGGAAATATAGACGTTTTGAACTGCGCCGTGAGAAGA
CCGGGTGGCATTCCATCCTGCGTTCGTGCCGTAGCTTCCCAAAGACCAAA
CACAACCGCTTCTGGAAAGTTGTCTGTGTCATTTCCCAATGCACCAAGAG
ATGTCTTCAATCCTGGGCAATACAGCGTGGCGGCGTTGTTGGGATTCCCT
GGAATCGGTTACATAGCCGCGGCCGTTTATCAGTGTGGTAATGTACCTGG
TGTTGGTAACTCGCCTGGATTCTATCTTCTTTCTAGAACGCTGTATGCGA
GAGAATTGATTCTGTATTTGATGAAGTTGGTGTTGAAGTGTCGGGGTTAT
GATGTTAACGTCGACTTTCAGAAAGTTGACCACGGCCGTTGTAATTACTT
TTTCGACCCGTCCGGCTTCACTGAATTTGATCCCTCAATGTTCGCACCGC
CCTTTTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:201451..202158-

>Ggra3953.t1 ID=Ggra3953.t1|Name=Ggra3953.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=708bp|location=Sequence derived from alignment at tig00000908_pilon:201451..202158- (Gracilaria gracilis GNS1m male)
ATGAAGGTTGGTATACTGGTCTCGTTGCTCTTTGTCCCAAGCATCTACGC
CTTCTCACTCACTCCCGAAAACCCAAACATCCCGGAAACATGTTCGCCGG
TTGAGAAAAACCCACCGTCGGACCCATTCTGTGTCGACCCGCCAGTGGTT
CCAGTCGACCGCCCCCTGTACACAGGCACATGGTTTCTGACCTATGTATC
AGGAAGTGCCAAGCAATTTTCCTCTGATCCATGCACAACTGCCAACTACA
CCCTAAACGCTGAAGGAAATATAGACGTTTTGAACTGCGCCGTGAGAAGA
CCGGGTGGCATTCCATCCTGCGTTCGTGCCGTAGCTTCCCAAAGACCAAA
CACAACCGCTTCTGGAAAGTTGTCTGTGTCATTTCCCAATGCACCAAGAG
ATGTCTTCAATCCTGGGCAATACAGCGTGGCGGCGTTGTTGGGATTCCCT
GGAATCGGTTACATAGCCGCGGCCGTTTATCAGTGTGGTAATGTACCTGG
TGTTGGTAACTCGCCTGGATTCTATCTTCTTTCTAGAACGCTGTATGCGA
GAGAATTGATTCTGTATTTGATGAAGTTGGTGTTGAAGTGTCGGGGTTAT
GATGTTAACGTCGACTTTCAGAAAGTTGACCACGGCCGTTGTAATTACTT
TTTCGACCCGTCCGGCTTCACTGAATTTGATCCCTCAATGTTCGCACCGC
CCTTTTAA
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