Ggra3952.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3952.t1
Unique Name	Ggra3952.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:198374..200317 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708230.1
PFAMs	EMP70
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17086
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005911,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016021,GO:0030054,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0050789,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0055044,GO:0060341,GO:0065007,GO:0070201,GO:0070861,GO:0070863,GO:0090087,GO:0090316,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1903827,GO:1903829,GO:1904951,GO:2000008,GO:2000010
Evalue	9.94e-167
EggNOG OGs	KOG1278@1\|root,KOG1278@2759\|Eukaryota
Description	positive regulation of protein exit from endoplasmic reticulum
COG category	S
BRITE	ko00000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3952	Ggra3952	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 198374..200317 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3952.t1.start1	Ggra3952.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 198374..198376 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3952.t1.CDS1	Ggra3952.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 198374..200317 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3952.t1.exon1	Ggra3952.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 198374..200317 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3952.t1.stop1	Ggra3952.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 200315..200317 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3952.t1	Ggra3952.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 198374..200317 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:198374..200317+
coding sequence from alignment at tig00000908_pilon:198374..200317+

mRNA sequence

>Ggra3952.t1 ID=Ggra3952.t1|Name=Ggra3952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp
MKPAPRFPLLLALALVLLTSPELTAAALLPGLSANDFTQNELLNIFANKM
VSHQNRIPFDYFTLPFCAPTAERQRALKTSRDPGVLGIGQILQGERSRLV
PYDVRLLEDVSCAQVCTADFSLPEVNLLVSRISKNYRVRLTLDELPVVVR
RDKTYTLGYPLGETAKNGDIHVINHLSFRIMYHIPDEYESLATAAYKRNN
KVYRIVGFEVSPASVASGECPSGGDTEPFVIPSDRKKRTSTKIPFTYSVR
FVESSVRWTTRFDTLLKVSSERQKMQVFAISNSIMMALALTASLAVVLFR
TLRRDCARFGLTASDLIDDFNDDFDNDVGWRMLRGDVFRSPVAAGMLSVL
CGSGAQLFVVTFVTLLFALLGVVSPHRRGDLITGLLVIWVVSSGFGGYVA
ARLHKAMGGMRWKTVTFGVALVLPGIVFSTFFVVNLFLWMMGSSGAAPFF
TIFVLLFLWLGVSVPLAFAGTYAGYQRKVYDFPVRTNQIPRPIPVQPSYL
KAPYVHLLSGILPFGVVCIELRVILNSVYLDEFYHFFGFLIAVFTLLAIT
CAEVSVVVVFVKLSNSDYGWWWNSWFASSTSGAYVFLYSMYYLLTSPGAD
PKNVVSNFLFIAYSIITSLCFSLLTGTIGFMSSLAFVRRIYSDSIDD*

spliced messenger RNA

>Ggra3952.t1 ID=Ggra3952.t1|Name=Ggra3952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00000908_pilon:198374..200317+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCGCACCACGTTTCCCCCTGCTCCTCGCGCTTGCTCTCGTCCT
TCTTACCTCCCCCGAACTGACTGCCGCCGCACTGCTTCCTGGACTTTCTG
CCAATGACTTCACCCAAAACGAGCTGCTCAACATCTTTGCCAACAAAATG
GTCTCTCATCAGAACCGCATTCCTTTCGACTACTTCACACTTCCCTTCTG
CGCTCCCACGGCCGAGCGTCAGCGCGCACTCAAAACATCAAGAGATCCTG
GTGTTCTTGGTATTGGACAAATTCTGCAAGGTGAGCGATCGCGTCTTGTA
CCATACGACGTTCGTCTCCTCGAAGATGTGTCCTGCGCACAAGTTTGCAC
GGCAGACTTCTCCCTGCCGGAGGTTAACCTTCTTGTATCACGAATTTCAA
AGAATTATCGAGTGCGACTTACTCTTGATGAATTACCGGTTGTGGTCAGA
AGAGACAAAACATACACTCTTGGTTATCCACTAGGAGAAACCGCCAAGAA
TGGAGACATTCATGTCATCAATCATCTAAGTTTCAGAATCATGTACCACA
TTCCTGATGAGTATGAATCACTCGCCACCGCGGCATACAAGCGCAACAAC
AAAGTGTATAGAATTGTTGGGTTTGAAGTCTCGCCTGCGTCAGTGGCAAG
TGGCGAATGCCCTTCCGGCGGCGACACAGAACCGTTTGTCATACCATCAG
ACAGGAAGAAGCGAACAAGCACCAAAATACCGTTTACCTACAGTGTGCGG
TTTGTTGAAAGCAGCGTAAGATGGACGACTCGTTTTGACACCTTGCTCAA
GGTCTCAAGTGAACGACAGAAAATGCAGGTGTTTGCCATAAGCAATTCCA
TTATGATGGCCCTAGCACTTACTGCTTCCTTGGCGGTCGTTTTGTTCCGA
ACGCTCCGACGCGATTGCGCACGATTCGGACTAACTGCTAGTGACCTCAT
CGACGATTTCAACGACGATTTTGACAATGACGTCGGTTGGAGAATGCTGC
GTGGTGATGTGTTCCGTTCACCTGTAGCTGCTGGTATGCTCTCTGTTCTC
TGCGGTTCCGGTGCACAGCTTTTCGTCGTTACGTTTGTCACACTTTTATT
CGCCCTTTTGGGCGTCGTGAGCCCCCACCGACGTGGAGACCTGATAACTG
GTCTACTAGTTATCTGGGTTGTATCAAGTGGATTTGGGGGATATGTAGCT
GCTAGACTGCATAAGGCAATGGGTGGAATGCGATGGAAGACTGTGACTTT
CGGTGTGGCTCTTGTGCTTCCCGGTATAGTGTTCTCCACCTTCTTTGTCG
TTAATCTGTTCTTGTGGATGATGGGATCATCTGGCGCTGCCCCGTTCTTC
ACGATTTTCGTCCTCTTGTTCTTATGGCTTGGTGTTTCTGTTCCATTAGC
ATTTGCTGGTACATACGCAGGATATCAGCGAAAGGTTTATGACTTTCCTG
TTCGTACAAATCAGATCCCTCGACCGATTCCTGTACAGCCATCGTATCTT
AAGGCACCGTACGTTCACTTGCTGTCAGGAATTTTGCCATTTGGTGTTGT
GTGTATTGAACTTCGGGTGATTCTTAACTCAGTGTATTTAGACGAGTTCT
ATCACTTCTTCGGGTTTCTCATCGCAGTATTCACGCTTCTGGCGATCACA
TGCGCAGAGGTTAGCGTGGTAGTCGTGTTCGTCAAGCTTAGCAACTCCGA
CTATGGATGGTGGTGGAACAGCTGGTTTGCGTCTTCTACATCTGGGGCCT
ACGTTTTCTTGTATAGCATGTATTATTTGCTCACTAGTCCGGGGGCTGAT
CCGAAGAACGTTGTATCGAATTTCCTGTTCATAGCTTACTCGATCATTAC
TTCGCTCTGCTTCTCACTGCTGACAGGCACGATTGGTTTCATGTCATCGC
TTGCATTTGTACGACGGATATACAGCGACTCTATCGATGACTAG

protein sequence of Ggra3952.t1

>Ggra3952.t1 ID=Ggra3952.t1|Name=Ggra3952.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=648bp
MKPAPRFPLLLALALVLLTSPELTAAALLPGLSANDFTQNELLNIFANKM
VSHQNRIPFDYFTLPFCAPTAERQRALKTSRDPGVLGIGQILQGERSRLV
PYDVRLLEDVSCAQVCTADFSLPEVNLLVSRISKNYRVRLTLDELPVVVR
RDKTYTLGYPLGETAKNGDIHVINHLSFRIMYHIPDEYESLATAAYKRNN
KVYRIVGFEVSPASVASGECPSGGDTEPFVIPSDRKKRTSTKIPFTYSVR
FVESSVRWTTRFDTLLKVSSERQKMQVFAISNSIMMALALTASLAVVLFR
TLRRDCARFGLTASDLIDDFNDDFDNDVGWRMLRGDVFRSPVAAGMLSVL
CGSGAQLFVVTFVTLLFALLGVVSPHRRGDLITGLLVIWVVSSGFGGYVA
ARLHKAMGGMRWKTVTFGVALVLPGIVFSTFFVVNLFLWMMGSSGAAPFF
TIFVLLFLWLGVSVPLAFAGTYAGYQRKVYDFPVRTNQIPRPIPVQPSYL
KAPYVHLLSGILPFGVVCIELRVILNSVYLDEFYHFFGFLIAVFTLLAIT
CAEVSVVVVFVKLSNSDYGWWWNSWFASSTSGAYVFLYSMYYLLTSPGAD
PKNVVSNFLFIAYSIITSLCFSLLTGTIGFMSSLAFVRRIYSDSIDD*

mRNA from alignment at tig00000908_pilon:198374..200317+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3952.t1 ID=Ggra3952.t1|Name=Ggra3952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00000908_pilon:198374..200317+ (Gracilaria gracilis GNS1m male)
ATGAAGCCCGCACCACGTTTCCCCCTGCTCCTCGCGCTTGCTCTCGTCCT
TCTTACCTCCCCCGAACTGACTGCCGCCGCACTGCTTCCTGGACTTTCTG
CCAATGACTTCACCCAAAACGAGCTGCTCAACATCTTTGCCAACAAAATG
GTCTCTCATCAGAACCGCATTCCTTTCGACTACTTCACACTTCCCTTCTG
CGCTCCCACGGCCGAGCGTCAGCGCGCACTCAAAACATCAAGAGATCCTG
GTGTTCTTGGTATTGGACAAATTCTGCAAGGTGAGCGATCGCGTCTTGTA
CCATACGACGTTCGTCTCCTCGAAGATGTGTCCTGCGCACAAGTTTGCAC
GGCAGACTTCTCCCTGCCGGAGGTTAACCTTCTTGTATCACGAATTTCAA
AGAATTATCGAGTGCGACTTACTCTTGATGAATTACCGGTTGTGGTCAGA
AGAGACAAAACATACACTCTTGGTTATCCACTAGGAGAAACCGCCAAGAA
TGGAGACATTCATGTCATCAATCATCTAAGTTTCAGAATCATGTACCACA
TTCCTGATGAGTATGAATCACTCGCCACCGCGGCATACAAGCGCAACAAC
AAAGTGTATAGAATTGTTGGGTTTGAAGTCTCGCCTGCGTCAGTGGCAAG
TGGCGAATGCCCTTCCGGCGGCGACACAGAACCGTTTGTCATACCATCAG
ACAGGAAGAAGCGAACAAGCACCAAAATACCGTTTACCTACAGTGTGCGG
TTTGTTGAAAGCAGCGTAAGATGGACGACTCGTTTTGACACCTTGCTCAA
GGTCTCAAGTGAACGACAGAAAATGCAGGTGTTTGCCATAAGCAATTCCA
TTATGATGGCCCTAGCACTTACTGCTTCCTTGGCGGTCGTTTTGTTCCGA
ACGCTCCGACGCGATTGCGCACGATTCGGACTAACTGCTAGTGACCTCAT
CGACGATTTCAACGACGATTTTGACAATGACGTCGGTTGGAGAATGCTGC
GTGGTGATGTGTTCCGTTCACCTGTAGCTGCTGGTATGCTCTCTGTTCTC
TGCGGTTCCGGTGCACAGCTTTTCGTCGTTACGTTTGTCACACTTTTATT
CGCCCTTTTGGGCGTCGTGAGCCCCCACCGACGTGGAGACCTGATAACTG
GTCTACTAGTTATCTGGGTTGTATCAAGTGGATTTGGGGGATATGTAGCT
GCTAGACTGCATAAGGCAATGGGTGGAATGCGATGGAAGACTGTGACTTT
CGGTGTGGCTCTTGTGCTTCCCGGTATAGTGTTCTCCACCTTCTTTGTCG
TTAATCTGTTCTTGTGGATGATGGGATCATCTGGCGCTGCCCCGTTCTTC
ACGATTTTCGTCCTCTTGTTCTTATGGCTTGGTGTTTCTGTTCCATTAGC
ATTTGCTGGTACATACGCAGGATATCAGCGAAAGGTTTATGACTTTCCTG
TTCGTACAAATCAGATCCCTCGACCGATTCCTGTACAGCCATCGTATCTT
AAGGCACCGTACGTTCACTTGCTGTCAGGAATTTTGCCATTTGGTGTTGT
GTGTATTGAACTTCGGGTGATTCTTAACTCAGTGTATTTAGACGAGTTCT
ATCACTTCTTCGGGTTTCTCATCGCAGTATTCACGCTTCTGGCGATCACA
TGCGCAGAGGTTAGCGTGGTAGTCGTGTTCGTCAAGCTTAGCAACTCCGA
CTATGGATGGTGGTGGAACAGCTGGTTTGCGTCTTCTACATCTGGGGCCT
ACGTTTTCTTGTATAGCATGTATTATTTGCTCACTAGTCCGGGGGCTGAT
CCGAAGAACGTTGTATCGAATTTCCTGTTCATAGCTTACTCGATCATTAC
TTCGCTCTGCTTCTCACTGCTGACAGGCACGATTGGTTTCATGTCATCGC
TTGCATTTGTACGACGGATATACAGCGACTCTATCGATGACTAG

Coding sequence (CDS) from alignment at tig00000908_pilon:198374..200317+

>Ggra3952.t1 ID=Ggra3952.t1|Name=Ggra3952.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1944bp|location=Sequence derived from alignment at tig00000908_pilon:198374..200317+ (Gracilaria gracilis GNS1m male)
ATGAAGCCCGCACCACGTTTCCCCCTGCTCCTCGCGCTTGCTCTCGTCCT
TCTTACCTCCCCCGAACTGACTGCCGCCGCACTGCTTCCTGGACTTTCTG
CCAATGACTTCACCCAAAACGAGCTGCTCAACATCTTTGCCAACAAAATG
GTCTCTCATCAGAACCGCATTCCTTTCGACTACTTCACACTTCCCTTCTG
CGCTCCCACGGCCGAGCGTCAGCGCGCACTCAAAACATCAAGAGATCCTG
GTGTTCTTGGTATTGGACAAATTCTGCAAGGTGAGCGATCGCGTCTTGTA
CCATACGACGTTCGTCTCCTCGAAGATGTGTCCTGCGCACAAGTTTGCAC
GGCAGACTTCTCCCTGCCGGAGGTTAACCTTCTTGTATCACGAATTTCAA
AGAATTATCGAGTGCGACTTACTCTTGATGAATTACCGGTTGTGGTCAGA
AGAGACAAAACATACACTCTTGGTTATCCACTAGGAGAAACCGCCAAGAA
TGGAGACATTCATGTCATCAATCATCTAAGTTTCAGAATCATGTACCACA
TTCCTGATGAGTATGAATCACTCGCCACCGCGGCATACAAGCGCAACAAC
AAAGTGTATAGAATTGTTGGGTTTGAAGTCTCGCCTGCGTCAGTGGCAAG
TGGCGAATGCCCTTCCGGCGGCGACACAGAACCGTTTGTCATACCATCAG
ACAGGAAGAAGCGAACAAGCACCAAAATACCGTTTACCTACAGTGTGCGG
TTTGTTGAAAGCAGCGTAAGATGGACGACTCGTTTTGACACCTTGCTCAA
GGTCTCAAGTGAACGACAGAAAATGCAGGTGTTTGCCATAAGCAATTCCA
TTATGATGGCCCTAGCACTTACTGCTTCCTTGGCGGTCGTTTTGTTCCGA
ACGCTCCGACGCGATTGCGCACGATTCGGACTAACTGCTAGTGACCTCAT
CGACGATTTCAACGACGATTTTGACAATGACGTCGGTTGGAGAATGCTGC
GTGGTGATGTGTTCCGTTCACCTGTAGCTGCTGGTATGCTCTCTGTTCTC
TGCGGTTCCGGTGCACAGCTTTTCGTCGTTACGTTTGTCACACTTTTATT
CGCCCTTTTGGGCGTCGTGAGCCCCCACCGACGTGGAGACCTGATAACTG
GTCTACTAGTTATCTGGGTTGTATCAAGTGGATTTGGGGGATATGTAGCT
GCTAGACTGCATAAGGCAATGGGTGGAATGCGATGGAAGACTGTGACTTT
CGGTGTGGCTCTTGTGCTTCCCGGTATAGTGTTCTCCACCTTCTTTGTCG
TTAATCTGTTCTTGTGGATGATGGGATCATCTGGCGCTGCCCCGTTCTTC
ACGATTTTCGTCCTCTTGTTCTTATGGCTTGGTGTTTCTGTTCCATTAGC
ATTTGCTGGTACATACGCAGGATATCAGCGAAAGGTTTATGACTTTCCTG
TTCGTACAAATCAGATCCCTCGACCGATTCCTGTACAGCCATCGTATCTT
AAGGCACCGTACGTTCACTTGCTGTCAGGAATTTTGCCATTTGGTGTTGT
GTGTATTGAACTTCGGGTGATTCTTAACTCAGTGTATTTAGACGAGTTCT
ATCACTTCTTCGGGTTTCTCATCGCAGTATTCACGCTTCTGGCGATCACA
TGCGCAGAGGTTAGCGTGGTAGTCGTGTTCGTCAAGCTTAGCAACTCCGA
CTATGGATGGTGGTGGAACAGCTGGTTTGCGTCTTCTACATCTGGGGCCT
ACGTTTTCTTGTATAGCATGTATTATTTGCTCACTAGTCCGGGGGCTGAT
CCGAAGAACGTTGTATCGAATTTCCTGTTCATAGCTTACTCGATCATTAC
TTCGCTCTGCTTCTCACTGCTGACAGGCACGATTGGTTTCATGTCATCGC
TTGCATTTGTACGACGGATATACAGCGACTCTATCGATGACTAG