Ggra3951.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3951.t1
Unique Name	Ggra3951.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	627

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:195874..197754 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708230.1
PFAMs	EMP70
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17086
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005911,GO:0008150,GO:0009506,GO:0012505,GO:0016020,GO:0016021,GO:0030054,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0050789,GO:0051049,GO:0051050,GO:0051222,GO:0051223,GO:0055044,GO:0060341,GO:0065007,GO:0070201,GO:0070861,GO:0070863,GO:0090087,GO:0090316,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1903827,GO:1903829,GO:1904951,GO:2000008,GO:2000010
Evalue	1.38e-219
EggNOG OGs	KOG1278@1\|root,KOG1278@2759\|Eukaryota
Description	positive regulation of protein exit from endoplasmic reticulum
COG category	S
BRITE	ko00000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3951	Ggra3951	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 195874..197754 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3951.t1.start1	Ggra3951.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 195874..195876 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3951.t1.CDS1	Ggra3951.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 195874..197754 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3951.t1.exon1	Ggra3951.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 195874..197754 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3951.t1.stop1	Ggra3951.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 197752..197754 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3951.t1	Ggra3951.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 195874..197754 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:195874..197754+
coding sequence from alignment at tig00000908_pilon:195874..197754+

mRNA sequence

>Ggra3951.t1 ID=Ggra3951.t1|Name=Ggra3951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=627bp
MRVFVRFFVAFAFASCACAFYLPGIAPTEYEEAAPMTILANKLVSTKNVV
PYDYYTLPVCAPKDPKKSRRLSLGQVLMGERAESTTYDISMRLDESCKVL
CTKDYDAKDIKLLSDRITDDYNVRLNLDNLPVIVRGTNDLNEDVFQLGYP
IGQKEGKTPCLFNHLKFTIQYHKPTGPIYNTNSEVFRVVGFEVQPMSVDH
KKDGDGQITTCPVNGTTSPACLRGGTASVTYTYDVEFKESTLQWATRWDP
LLKANPELKQIQWFSIINSLMISLFLTAMVAMILLRTVYLDFARYNNIDD
EEEIQEESGWKLIHGDVFRPPTLSGLLSVLVGSGAQMLAMTGVTLVFALL
GFLSPSFRGGLLTTMLSLWVLSSAICGYYSARIYSGLGGTNKKSVTLGSA
FLFSGSAFAVFFVLNFLLWVSGSTGAVPFTTLLLILVMWFGISVPLNVIG
AFVGYKQKAYEFPVRTNQIPREIPNSSTFSNFLFGLFSGILPFGVVFMEL
VFILNSIWLNEIFYFFGFLGAVFLILLVTCAEVSIVLTYLQLSKESYHWW
WPAFISTASSGLYVFGYSLVFLFSQRGLEGIHVVSTLVYAGYMLLGSLMF
ALGTGCVGFLSSFAFVRKIYSSVHID*

spliced messenger RNA

>Ggra3951.t1 ID=Ggra3951.t1|Name=Ggra3951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1881bp|location=Sequence derived from alignment at tig00000908_pilon:195874..197754+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGTTCGTGCGCTTCTTCGTGGCGTTTGCGTTCGCTTCTTGTGC
TTGCGCGTTTTACTTGCCCGGCATTGCGCCCACCGAGTATGAAGAGGCCG
CGCCTATGACCATTCTGGCCAACAAACTGGTGTCCACCAAGAATGTGGTG
CCGTACGATTACTACACCCTGCCAGTTTGCGCCCCCAAAGATCCGAAGAA
AAGTCGTCGCTTATCTTTGGGTCAGGTGCTCATGGGAGAGCGCGCCGAGT
CCACTACCTACGACATTTCGATGCGACTCGATGAGAGTTGTAAGGTGCTG
TGCACTAAGGACTACGATGCGAAGGACATCAAGCTCCTCTCTGATCGCAT
CACAGATGATTACAATGTCCGCCTTAATCTCGACAATCTTCCTGTAATTG
TTAGAGGCACTAATGATCTCAATGAGGACGTCTTTCAACTTGGATATCCT
ATCGGCCAGAAGGAAGGAAAGACCCCGTGCTTGTTCAATCACCTCAAGTT
CACAATCCAGTACCACAAGCCTACTGGTCCCATCTACAACACTAACAGTG
AGGTTTTCCGCGTCGTCGGCTTTGAGGTACAACCCATGTCTGTCGATCAC
AAAAAGGATGGTGACGGTCAGATTACCACTTGTCCTGTCAACGGCACCAC
AAGTCCTGCCTGCCTCAGAGGCGGTACTGCCTCCGTCACCTACACATATG
ACGTCGAGTTCAAGGAATCTACCTTGCAATGGGCCACACGCTGGGATCCT
TTGCTCAAAGCAAATCCGGAACTCAAGCAGATTCAATGGTTCTCTATCAT
TAACTCTCTCATGATTTCTCTCTTCCTTACTGCAATGGTTGCCATGATTC
TGCTGAGAACCGTTTACCTCGATTTCGCGCGATACAATAACATTGATGAC
GAGGAAGAGATTCAAGAAGAATCTGGATGGAAGCTCATTCATGGTGACGT
TTTCCGTCCCCCAACGCTCAGTGGCCTCTTGTCTGTCTTGGTTGGCTCCG
GTGCCCAGATGCTTGCTATGACCGGCGTCACTCTTGTATTCGCCCTACTT
GGTTTCTTATCGCCTTCGTTCCGAGGCGGTTTGCTCACCACTATGTTGTC
TCTGTGGGTTCTATCCAGCGCGATTTGTGGGTATTACTCAGCGCGTATTT
ACTCCGGTCTTGGTGGCACTAACAAGAAGAGTGTCACTCTGGGTTCAGCG
TTCTTGTTTTCGGGATCCGCCTTTGCGGTATTCTTCGTTCTGAACTTTTT
ACTGTGGGTTAGTGGCTCTACGGGTGCTGTGCCGTTCACCACGTTGTTGC
TTATTTTGGTCATGTGGTTTGGTATATCTGTTCCGCTGAATGTTATCGGC
GCGTTCGTCGGTTACAAGCAAAAGGCTTATGAATTCCCGGTGCGTACCAA
TCAAATACCGCGTGAGATCCCCAATTCATCCACCTTCTCCAATTTCTTGT
TTGGACTTTTCTCCGGAATATTGCCGTTCGGTGTGGTTTTCATGGAACTG
GTTTTCATTCTGAACAGCATCTGGCTCAATGAGATCTTTTATTTCTTTGG
CTTCCTCGGAGCTGTATTCCTTATTCTACTTGTCACCTGCGCAGAAGTGA
GCATTGTGCTCACATACTTGCAACTATCTAAGGAGTCATACCATTGGTGG
TGGCCAGCTTTCATCTCCACGGCCTCGTCTGGTTTGTATGTGTTTGGGTA
CAGTCTGGTGTTCCTTTTCTCACAGCGAGGGCTAGAAGGTATTCATGTAG
TAAGCACTCTGGTATACGCCGGGTATATGCTACTGGGGTCCCTTATGTTC
GCACTGGGGACAGGATGTGTAGGCTTTTTGTCGTCATTTGCGTTTGTGAG
AAAGATCTATTCAAGCGTACATATCGATTAG

protein sequence of Ggra3951.t1

>Ggra3951.t1 ID=Ggra3951.t1|Name=Ggra3951.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=627bp
MRVFVRFFVAFAFASCACAFYLPGIAPTEYEEAAPMTILANKLVSTKNVV
PYDYYTLPVCAPKDPKKSRRLSLGQVLMGERAESTTYDISMRLDESCKVL
CTKDYDAKDIKLLSDRITDDYNVRLNLDNLPVIVRGTNDLNEDVFQLGYP
IGQKEGKTPCLFNHLKFTIQYHKPTGPIYNTNSEVFRVVGFEVQPMSVDH
KKDGDGQITTCPVNGTTSPACLRGGTASVTYTYDVEFKESTLQWATRWDP
LLKANPELKQIQWFSIINSLMISLFLTAMVAMILLRTVYLDFARYNNIDD
EEEIQEESGWKLIHGDVFRPPTLSGLLSVLVGSGAQMLAMTGVTLVFALL
GFLSPSFRGGLLTTMLSLWVLSSAICGYYSARIYSGLGGTNKKSVTLGSA
FLFSGSAFAVFFVLNFLLWVSGSTGAVPFTTLLLILVMWFGISVPLNVIG
AFVGYKQKAYEFPVRTNQIPREIPNSSTFSNFLFGLFSGILPFGVVFMEL
VFILNSIWLNEIFYFFGFLGAVFLILLVTCAEVSIVLTYLQLSKESYHWW
WPAFISTASSGLYVFGYSLVFLFSQRGLEGIHVVSTLVYAGYMLLGSLMF
ALGTGCVGFLSSFAFVRKIYSSVHID*

mRNA from alignment at tig00000908_pilon:195874..197754+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3951.t1 ID=Ggra3951.t1|Name=Ggra3951.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1881bp|location=Sequence derived from alignment at tig00000908_pilon:195874..197754+ (Gracilaria gracilis GNS1m male)
ATGCGCGTGTTCGTGCGCTTCTTCGTGGCGTTTGCGTTCGCTTCTTGTGC
TTGCGCGTTTTACTTGCCCGGCATTGCGCCCACCGAGTATGAAGAGGCCG
CGCCTATGACCATTCTGGCCAACAAACTGGTGTCCACCAAGAATGTGGTG
CCGTACGATTACTACACCCTGCCAGTTTGCGCCCCCAAAGATCCGAAGAA
AAGTCGTCGCTTATCTTTGGGTCAGGTGCTCATGGGAGAGCGCGCCGAGT
CCACTACCTACGACATTTCGATGCGACTCGATGAGAGTTGTAAGGTGCTG
TGCACTAAGGACTACGATGCGAAGGACATCAAGCTCCTCTCTGATCGCAT
CACAGATGATTACAATGTCCGCCTTAATCTCGACAATCTTCCTGTAATTG
TTAGAGGCACTAATGATCTCAATGAGGACGTCTTTCAACTTGGATATCCT
ATCGGCCAGAAGGAAGGAAAGACCCCGTGCTTGTTCAATCACCTCAAGTT
CACAATCCAGTACCACAAGCCTACTGGTCCCATCTACAACACTAACAGTG
AGGTTTTCCGCGTCGTCGGCTTTGAGGTACAACCCATGTCTGTCGATCAC
AAAAAGGATGGTGACGGTCAGATTACCACTTGTCCTGTCAACGGCACCAC
AAGTCCTGCCTGCCTCAGAGGCGGTACTGCCTCCGTCACCTACACATATG
ACGTCGAGTTCAAGGAATCTACCTTGCAATGGGCCACACGCTGGGATCCT
TTGCTCAAAGCAAATCCGGAACTCAAGCAGATTCAATGGTTCTCTATCAT
TAACTCTCTCATGATTTCTCTCTTCCTTACTGCAATGGTTGCCATGATTC
TGCTGAGAACCGTTTACCTCGATTTCGCGCGATACAATAACATTGATGAC
GAGGAAGAGATTCAAGAAGAATCTGGATGGAAGCTCATTCATGGTGACGT
TTTCCGTCCCCCAACGCTCAGTGGCCTCTTGTCTGTCTTGGTTGGCTCCG
GTGCCCAGATGCTTGCTATGACCGGCGTCACTCTTGTATTCGCCCTACTT
GGTTTCTTATCGCCTTCGTTCCGAGGCGGTTTGCTCACCACTATGTTGTC
TCTGTGGGTTCTATCCAGCGCGATTTGTGGGTATTACTCAGCGCGTATTT
ACTCCGGTCTTGGTGGCACTAACAAGAAGAGTGTCACTCTGGGTTCAGCG
TTCTTGTTTTCGGGATCCGCCTTTGCGGTATTCTTCGTTCTGAACTTTTT
ACTGTGGGTTAGTGGCTCTACGGGTGCTGTGCCGTTCACCACGTTGTTGC
TTATTTTGGTCATGTGGTTTGGTATATCTGTTCCGCTGAATGTTATCGGC
GCGTTCGTCGGTTACAAGCAAAAGGCTTATGAATTCCCGGTGCGTACCAA
TCAAATACCGCGTGAGATCCCCAATTCATCCACCTTCTCCAATTTCTTGT
TTGGACTTTTCTCCGGAATATTGCCGTTCGGTGTGGTTTTCATGGAACTG
GTTTTCATTCTGAACAGCATCTGGCTCAATGAGATCTTTTATTTCTTTGG
CTTCCTCGGAGCTGTATTCCTTATTCTACTTGTCACCTGCGCAGAAGTGA
GCATTGTGCTCACATACTTGCAACTATCTAAGGAGTCATACCATTGGTGG
TGGCCAGCTTTCATCTCCACGGCCTCGTCTGGTTTGTATGTGTTTGGGTA
CAGTCTGGTGTTCCTTTTCTCACAGCGAGGGCTAGAAGGTATTCATGTAG
TAAGCACTCTGGTATACGCCGGGTATATGCTACTGGGGTCCCTTATGTTC
GCACTGGGGACAGGATGTGTAGGCTTTTTGTCGTCATTTGCGTTTGTGAG
AAAGATCTATTCAAGCGTACATATCGATTAG

Coding sequence (CDS) from alignment at tig00000908_pilon:195874..197754+

>Ggra3951.t1 ID=Ggra3951.t1|Name=Ggra3951.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1881bp|location=Sequence derived from alignment at tig00000908_pilon:195874..197754+ (Gracilaria gracilis GNS1m male)
ATGCGCGTGTTCGTGCGCTTCTTCGTGGCGTTTGCGTTCGCTTCTTGTGC
TTGCGCGTTTTACTTGCCCGGCATTGCGCCCACCGAGTATGAAGAGGCCG
CGCCTATGACCATTCTGGCCAACAAACTGGTGTCCACCAAGAATGTGGTG
CCGTACGATTACTACACCCTGCCAGTTTGCGCCCCCAAAGATCCGAAGAA
AAGTCGTCGCTTATCTTTGGGTCAGGTGCTCATGGGAGAGCGCGCCGAGT
CCACTACCTACGACATTTCGATGCGACTCGATGAGAGTTGTAAGGTGCTG
TGCACTAAGGACTACGATGCGAAGGACATCAAGCTCCTCTCTGATCGCAT
CACAGATGATTACAATGTCCGCCTTAATCTCGACAATCTTCCTGTAATTG
TTAGAGGCACTAATGATCTCAATGAGGACGTCTTTCAACTTGGATATCCT
ATCGGCCAGAAGGAAGGAAAGACCCCGTGCTTGTTCAATCACCTCAAGTT
CACAATCCAGTACCACAAGCCTACTGGTCCCATCTACAACACTAACAGTG
AGGTTTTCCGCGTCGTCGGCTTTGAGGTACAACCCATGTCTGTCGATCAC
AAAAAGGATGGTGACGGTCAGATTACCACTTGTCCTGTCAACGGCACCAC
AAGTCCTGCCTGCCTCAGAGGCGGTACTGCCTCCGTCACCTACACATATG
ACGTCGAGTTCAAGGAATCTACCTTGCAATGGGCCACACGCTGGGATCCT
TTGCTCAAAGCAAATCCGGAACTCAAGCAGATTCAATGGTTCTCTATCAT
TAACTCTCTCATGATTTCTCTCTTCCTTACTGCAATGGTTGCCATGATTC
TGCTGAGAACCGTTTACCTCGATTTCGCGCGATACAATAACATTGATGAC
GAGGAAGAGATTCAAGAAGAATCTGGATGGAAGCTCATTCATGGTGACGT
TTTCCGTCCCCCAACGCTCAGTGGCCTCTTGTCTGTCTTGGTTGGCTCCG
GTGCCCAGATGCTTGCTATGACCGGCGTCACTCTTGTATTCGCCCTACTT
GGTTTCTTATCGCCTTCGTTCCGAGGCGGTTTGCTCACCACTATGTTGTC
TCTGTGGGTTCTATCCAGCGCGATTTGTGGGTATTACTCAGCGCGTATTT
ACTCCGGTCTTGGTGGCACTAACAAGAAGAGTGTCACTCTGGGTTCAGCG
TTCTTGTTTTCGGGATCCGCCTTTGCGGTATTCTTCGTTCTGAACTTTTT
ACTGTGGGTTAGTGGCTCTACGGGTGCTGTGCCGTTCACCACGTTGTTGC
TTATTTTGGTCATGTGGTTTGGTATATCTGTTCCGCTGAATGTTATCGGC
GCGTTCGTCGGTTACAAGCAAAAGGCTTATGAATTCCCGGTGCGTACCAA
TCAAATACCGCGTGAGATCCCCAATTCATCCACCTTCTCCAATTTCTTGT
TTGGACTTTTCTCCGGAATATTGCCGTTCGGTGTGGTTTTCATGGAACTG
GTTTTCATTCTGAACAGCATCTGGCTCAATGAGATCTTTTATTTCTTTGG
CTTCCTCGGAGCTGTATTCCTTATTCTACTTGTCACCTGCGCAGAAGTGA
GCATTGTGCTCACATACTTGCAACTATCTAAGGAGTCATACCATTGGTGG
TGGCCAGCTTTCATCTCCACGGCCTCGTCTGGTTTGTATGTGTTTGGGTA
CAGTCTGGTGTTCCTTTTCTCACAGCGAGGGCTAGAAGGTATTCATGTAG
TAAGCACTCTGGTATACGCCGGGTATATGCTACTGGGGTCCCTTATGTTC
GCACTGGGGACAGGATGTGTAGGCTTTTTGTCGTCATTTGCGTTTGTGAG
AAAGATCTATTCAAGCGTACATATCGATTAG