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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 936053.I1CAE7 |
| PFAMs | ArgoL1,ArgoL2,ArgoMid,ArgoN,PAZ,Piwi |
| Max annot lvl | 4751|Fungi |
| Evalue | 3.66e-124 |
| EggNOG OGs | KOG1041@1|root,KOG1041@2759|Eukaryota,38CFV@33154|Opisthokonta,3NU0D@4751|Fungi,1GSVJ@112252|Fungi incertae sedis |
| Description | Mortierella verticillata NRRL 6337 |
| COG category | J |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3947.t1.start1 | Ggra3947.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000908_pilon 185164..185166 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3947.t1.stop1 | Ggra3947.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000908_pilon 187762..187764 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra3947.t1 ID=Ggra3947.t1|Name=Ggra3947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp MSSPSSSKQTPHRDKPMRRPSYGRAGKPINVEANFVRLNIPSRLKASQYA VQLFRDKTEKGKTTRKEVSATELILFNRNCFDVLLDKYGDEFGCNLAYNG RSIAYAPTEINRKALGHRFKIKVNKDGEKPSRSDKRTEEVEIILSHAKYL RYDELFSGSVETTATSEYIACLDVVLAQAAAIGHVQVGRSFYNSDNSVAL GRRNVTSSAWTGFYQSVRMSQLGLLVNMDESFTAFWNRGRKPLQQLVADA NDKRDLDCRDSRGLREIGQRLRGLKVKAVHTGIVYRVYGFSDRGADRITF ESDGRKVSISQYFADTYGIRLKEGGAPCVRTHPKRDTFLPMELLAVVPNQ RVAGVLSQDETMTMVKTASTKPHIRRSNASRKIQQLKYHEHPTCRDFRVK VDSSLVKLKARVLPPPIINYASGAVRPANGQWRAKNGVARPGIIFSWAVL NMSRVRREEIQQFVRDLTSAMGRAGLTLHQKTPKLYNGDERDVEREMQRI AQEYSRDKTLKMRKPGLQVLILIKERQDSRVYNAIKREADINMGIVSQVC LAKHCGSRARGRDMYCDNLVLKINAKLGGQNGLVSTYAQDRESRMPDVNF LTVPHIILGADVTHPMPGGRGPSVAALVGSRDRNGLQFSSSIRSQAGRQE MITDIGDMFREVYSVWFHAFNKSVHAGKIIMFRDGVSEGQFEEVMQREVF AIRRACMAISEKLRPMITYIIVTKRHHTRFFPGSRDIADRSGNIPPGTVI DSDITSKEYYDFYLNSHAGIQGTNKPSKYTVLIDENKIQPDALYGFIYRL SHSFVRCNRPVSMVNSAYYAHLLAFRGRAYLGDDMSDTGSYASGGNSQIP AVPIAHGMLKGHLYFV* back to topspliced messenger RNA >Ggra3947.t1 ID=Ggra3947.t1|Name=Ggra3947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2601bp|location=Sequence derived from alignment at tig00000908_pilon:185164..187764+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTTCTCCAAGCTCCTCCAAACAAACCCCTCATCGTGACAAGCCTAT GCGCAGGCCTTCGTATGGCAGGGCCGGCAAACCTATCAACGTTGAGGCAA ATTTCGTACGTCTAAACATTCCGAGTCGTCTCAAGGCCTCTCAGTATGCC GTGCAACTCTTTCGCGACAAGACCGAGAAGGGAAAGACCACCCGGAAAGA AGTGAGTGCCACAGAGCTCATTTTGTTTAATCGAAACTGTTTCGATGTTC TGTTGGACAAGTACGGTGACGAGTTTGGATGTAATCTAGCGTATAATGGT CGCTCTATTGCTTATGCACCTACGGAAATCAACCGCAAAGCCCTTGGACA TCGTTTCAAGATCAAGGTCAACAAAGATGGCGAAAAACCCTCCAGGAGTG ATAAGAGAACTGAGGAAGTTGAAATCATCCTGAGCCATGCAAAGTACCTC AGGTATGACGAACTATTCTCGGGTTCTGTGGAAACTACCGCCACATCAGA GTACATCGCTTGTTTAGATGTTGTGTTGGCGCAAGCTGCCGCTATCGGAC ATGTCCAGGTTGGCCGCTCGTTCTACAACTCTGATAACTCAGTGGCGCTT GGCCGCCGGAACGTCACCAGTAGTGCCTGGACCGGCTTTTATCAAAGCGT ACGCATGTCCCAACTTGGCTTGCTTGTGAATATGGACGAATCATTTACTG CCTTTTGGAACAGGGGAAGGAAGCCCCTTCAACAGCTTGTGGCAGATGCC AACGACAAACGTGACCTCGACTGCCGCGATTCAAGAGGACTTCGGGAGAT CGGACAAAGATTGAGGGGCCTTAAGGTGAAGGCTGTTCATACAGGGATCG TGTATCGGGTGTACGGTTTTTCAGACCGTGGCGCCGATCGCATCACTTTC GAGTCTGATGGTCGCAAGGTTTCTATCTCTCAGTACTTTGCCGATACTTA TGGAATCAGGCTTAAAGAGGGTGGTGCCCCATGTGTTCGAACCCATCCTA AGAGGGATACGTTCTTACCCATGGAATTACTTGCTGTCGTTCCAAACCAG CGCGTAGCCGGTGTCTTGTCACAAGATGAGACCATGACAATGGTGAAAAC TGCAAGTACGAAACCTCATATCCGCAGGAGCAATGCCTCTAGGAAGATTC AGCAACTGAAGTACCATGAACACCCAACTTGCAGGGATTTCCGAGTCAAA GTCGATTCTAGCCTAGTCAAGTTGAAGGCTCGTGTTCTGCCGCCGCCAAT CATAAACTATGCCTCCGGGGCTGTGCGCCCCGCGAACGGACAATGGAGGG CGAAGAATGGAGTTGCAAGACCTGGGATCATTTTCTCGTGGGCTGTTTTA AATATGTCAAGAGTTCGAAGGGAAGAGATTCAGCAGTTTGTAAGGGATCT CACTTCGGCAATGGGACGAGCTGGATTAACGCTTCACCAGAAGACCCCCA AACTCTACAACGGCGATGAGAGAGACGTGGAACGGGAAATGCAACGTATT GCTCAAGAATACAGTCGCGATAAGACCTTGAAGATGCGCAAACCGGGTCT TCAGGTGCTCATCCTTATCAAGGAAAGGCAGGACTCGAGGGTTTATAACG CGATAAAACGCGAAGCAGACATAAACATGGGTATTGTTTCTCAGGTTTGC TTGGCGAAGCATTGCGGATCAAGGGCGCGGGGACGGGATATGTACTGCGA CAACCTTGTTCTCAAGATTAATGCGAAACTTGGAGGTCAGAATGGCCTTG TTAGTACATACGCGCAAGATAGGGAGAGTCGTATGCCTGATGTCAACTTT CTCACCGTCCCGCATATTATTCTTGGCGCTGATGTGACTCATCCAATGCC GGGTGGGAGAGGACCAAGTGTTGCGGCGCTGGTTGGTTCTCGGGACCGCA ATGGTCTCCAATTCTCGTCCTCAATTCGCTCACAAGCTGGACGGCAGGAA ATGATAACTGATATCGGAGACATGTTCAGGGAAGTCTATAGTGTTTGGTT CCATGCCTTCAACAAGAGCGTTCATGCGGGGAAGATTATCATGTTTCGGG ATGGTGTATCCGAGGGTCAGTTTGAGGAGGTTATGCAGCGTGAAGTATTT GCAATTCGTCGAGCTTGCATGGCGATAAGCGAAAAGTTGCGCCCAATGAT TACCTACATTATTGTGACGAAGCGCCACCACACACGGTTCTTCCCTGGTT CTAGGGACATTGCCGATAGATCTGGCAACATTCCTCCTGGAACCGTTATA GATTCTGACATCACGAGTAAGGAATACTACGACTTTTATCTCAACTCACA TGCAGGAATTCAAGGTACAAACAAGCCATCGAAGTATACCGTGCTTATTG ATGAGAACAAGATACAGCCGGATGCTCTGTATGGATTCATTTATCGATTA TCTCACTCCTTCGTGAGGTGCAATCGTCCTGTTTCTATGGTCAACAGTGC GTACTATGCGCACCTTTTGGCCTTCCGCGGACGAGCGTACTTGGGCGATG ATATGTCCGATACTGGTTCCTATGCCTCTGGTGGCAACTCTCAAATCCCA GCGGTGCCGATTGCCCATGGGATGTTGAAGGGTCACCTTTACTTTGTATG A back to topprotein sequence of Ggra3947.t1 >Ggra3947.t1 ID=Ggra3947.t1|Name=Ggra3947.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=867bp
MSSPSSSKQTPHRDKPMRRPSYGRAGKPINVEANFVRLNIPSRLKASQYA VQLFRDKTEKGKTTRKEVSATELILFNRNCFDVLLDKYGDEFGCNLAYNG RSIAYAPTEINRKALGHRFKIKVNKDGEKPSRSDKRTEEVEIILSHAKYL RYDELFSGSVETTATSEYIACLDVVLAQAAAIGHVQVGRSFYNSDNSVAL GRRNVTSSAWTGFYQSVRMSQLGLLVNMDESFTAFWNRGRKPLQQLVADA NDKRDLDCRDSRGLREIGQRLRGLKVKAVHTGIVYRVYGFSDRGADRITF ESDGRKVSISQYFADTYGIRLKEGGAPCVRTHPKRDTFLPMELLAVVPNQ RVAGVLSQDETMTMVKTASTKPHIRRSNASRKIQQLKYHEHPTCRDFRVK VDSSLVKLKARVLPPPIINYASGAVRPANGQWRAKNGVARPGIIFSWAVL NMSRVRREEIQQFVRDLTSAMGRAGLTLHQKTPKLYNGDERDVEREMQRI AQEYSRDKTLKMRKPGLQVLILIKERQDSRVYNAIKREADINMGIVSQVC LAKHCGSRARGRDMYCDNLVLKINAKLGGQNGLVSTYAQDRESRMPDVNF LTVPHIILGADVTHPMPGGRGPSVAALVGSRDRNGLQFSSSIRSQAGRQE MITDIGDMFREVYSVWFHAFNKSVHAGKIIMFRDGVSEGQFEEVMQREVF AIRRACMAISEKLRPMITYIIVTKRHHTRFFPGSRDIADRSGNIPPGTVI DSDITSKEYYDFYLNSHAGIQGTNKPSKYTVLIDENKIQPDALYGFIYRL SHSFVRCNRPVSMVNSAYYAHLLAFRGRAYLGDDMSDTGSYASGGNSQIP AVPIAHGMLKGHLYFV* back to topmRNA from alignment at tig00000908_pilon:185164..187764+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra3947.t1 ID=Ggra3947.t1|Name=Ggra3947.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2601bp|location=Sequence derived from alignment at tig00000908_pilon:185164..187764+ (Gracilaria gracilis GNS1m male) ATGAGTTCTCCAAGCTCCTCCAAACAAACCCCTCATCGTGACAAGCCTAT
GCGCAGGCCTTCGTATGGCAGGGCCGGCAAACCTATCAACGTTGAGGCAA
ATTTCGTACGTCTAAACATTCCGAGTCGTCTCAAGGCCTCTCAGTATGCC
GTGCAACTCTTTCGCGACAAGACCGAGAAGGGAAAGACCACCCGGAAAGA
AGTGAGTGCCACAGAGCTCATTTTGTTTAATCGAAACTGTTTCGATGTTC
TGTTGGACAAGTACGGTGACGAGTTTGGATGTAATCTAGCGTATAATGGT
CGCTCTATTGCTTATGCACCTACGGAAATCAACCGCAAAGCCCTTGGACA
TCGTTTCAAGATCAAGGTCAACAAAGATGGCGAAAAACCCTCCAGGAGTG
ATAAGAGAACTGAGGAAGTTGAAATCATCCTGAGCCATGCAAAGTACCTC
AGGTATGACGAACTATTCTCGGGTTCTGTGGAAACTACCGCCACATCAGA
GTACATCGCTTGTTTAGATGTTGTGTTGGCGCAAGCTGCCGCTATCGGAC
ATGTCCAGGTTGGCCGCTCGTTCTACAACTCTGATAACTCAGTGGCGCTT
GGCCGCCGGAACGTCACCAGTAGTGCCTGGACCGGCTTTTATCAAAGCGT
ACGCATGTCCCAACTTGGCTTGCTTGTGAATATGGACGAATCATTTACTG
CCTTTTGGAACAGGGGAAGGAAGCCCCTTCAACAGCTTGTGGCAGATGCC
AACGACAAACGTGACCTCGACTGCCGCGATTCAAGAGGACTTCGGGAGAT
CGGACAAAGATTGAGGGGCCTTAAGGTGAAGGCTGTTCATACAGGGATCG
TGTATCGGGTGTACGGTTTTTCAGACCGTGGCGCCGATCGCATCACTTTC
GAGTCTGATGGTCGCAAGGTTTCTATCTCTCAGTACTTTGCCGATACTTA
TGGAATCAGGCTTAAAGAGGGTGGTGCCCCATGTGTTCGAACCCATCCTA
AGAGGGATACGTTCTTACCCATGGAATTACTTGCTGTCGTTCCAAACCAG
CGCGTAGCCGGTGTCTTGTCACAAGATGAGACCATGACAATGGTGAAAAC
TGCAAGTACGAAACCTCATATCCGCAGGAGCAATGCCTCTAGGAAGATTC
AGCAACTGAAGTACCATGAACACCCAACTTGCAGGGATTTCCGAGTCAAA
GTCGATTCTAGCCTAGTCAAGTTGAAGGCTCGTGTTCTGCCGCCGCCAAT
CATAAACTATGCCTCCGGGGCTGTGCGCCCCGCGAACGGACAATGGAGGG
CGAAGAATGGAGTTGCAAGACCTGGGATCATTTTCTCGTGGGCTGTTTTA
AATATGTCAAGAGTTCGAAGGGAAGAGATTCAGCAGTTTGTAAGGGATCT
CACTTCGGCAATGGGACGAGCTGGATTAACGCTTCACCAGAAGACCCCCA
AACTCTACAACGGCGATGAGAGAGACGTGGAACGGGAAATGCAACGTATT
GCTCAAGAATACAGTCGCGATAAGACCTTGAAGATGCGCAAACCGGGTCT
TCAGGTGCTCATCCTTATCAAGGAAAGGCAGGACTCGAGGGTTTATAACG
CGATAAAACGCGAAGCAGACATAAACATGGGTATTGTTTCTCAGGTTTGC
TTGGCGAAGCATTGCGGATCAAGGGCGCGGGGACGGGATATGTACTGCGA
CAACCTTGTTCTCAAGATTAATGCGAAACTTGGAGGTCAGAATGGCCTTG
TTAGTACATACGCGCAAGATAGGGAGAGTCGTATGCCTGATGTCAACTTT
CTCACCGTCCCGCATATTATTCTTGGCGCTGATGTGACTCATCCAATGCC
GGGTGGGAGAGGACCAAGTGTTGCGGCGCTGGTTGGTTCTCGGGACCGCA
ATGGTCTCCAATTCTCGTCCTCAATTCGCTCACAAGCTGGACGGCAGGAA
ATGATAACTGATATCGGAGACATGTTCAGGGAAGTCTATAGTGTTTGGTT
CCATGCCTTCAACAAGAGCGTTCATGCGGGGAAGATTATCATGTTTCGGG
ATGGTGTATCCGAGGGTCAGTTTGAGGAGGTTATGCAGCGTGAAGTATTT
GCAATTCGTCGAGCTTGCATGGCGATAAGCGAAAAGTTGCGCCCAATGAT
TACCTACATTATTGTGACGAAGCGCCACCACACACGGTTCTTCCCTGGTT
CTAGGGACATTGCCGATAGATCTGGCAACATTCCTCCTGGAACCGTTATA
GATTCTGACATCACGAGTAAGGAATACTACGACTTTTATCTCAACTCACA
TGCAGGAATTCAAGGTACAAACAAGCCATCGAAGTATACCGTGCTTATTG
ATGAGAACAAGATACAGCCGGATGCTCTGTATGGATTCATTTATCGATTA
TCTCACTCCTTCGTGAGGTGCAATCGTCCTGTTTCTATGGTCAACAGTGC
GTACTATGCGCACCTTTTGGCCTTCCGCGGACGAGCGTACTTGGGCGATG
ATATGTCCGATACTGGTTCCTATGCCTCTGGTGGCAACTCTCAAATCCCA
GCGGTGCCGATTGCCCATGGGATGTTGAAGGGTCACCTTTACTTTGTATG
A back to topCoding sequence (CDS) from alignment at tig00000908_pilon:185164..187764+ >Ggra3947.t1 ID=Ggra3947.t1|Name=Ggra3947.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2601bp|location=Sequence derived from alignment at tig00000908_pilon:185164..187764+ (Gracilaria gracilis GNS1m male) ATGAGTTCTCCAAGCTCCTCCAAACAAACCCCTCATCGTGACAAGCCTAT GCGCAGGCCTTCGTATGGCAGGGCCGGCAAACCTATCAACGTTGAGGCAA ATTTCGTACGTCTAAACATTCCGAGTCGTCTCAAGGCCTCTCAGTATGCC GTGCAACTCTTTCGCGACAAGACCGAGAAGGGAAAGACCACCCGGAAAGA AGTGAGTGCCACAGAGCTCATTTTGTTTAATCGAAACTGTTTCGATGTTC TGTTGGACAAGTACGGTGACGAGTTTGGATGTAATCTAGCGTATAATGGT CGCTCTATTGCTTATGCACCTACGGAAATCAACCGCAAAGCCCTTGGACA TCGTTTCAAGATCAAGGTCAACAAAGATGGCGAAAAACCCTCCAGGAGTG ATAAGAGAACTGAGGAAGTTGAAATCATCCTGAGCCATGCAAAGTACCTC AGGTATGACGAACTATTCTCGGGTTCTGTGGAAACTACCGCCACATCAGA GTACATCGCTTGTTTAGATGTTGTGTTGGCGCAAGCTGCCGCTATCGGAC ATGTCCAGGTTGGCCGCTCGTTCTACAACTCTGATAACTCAGTGGCGCTT GGCCGCCGGAACGTCACCAGTAGTGCCTGGACCGGCTTTTATCAAAGCGT ACGCATGTCCCAACTTGGCTTGCTTGTGAATATGGACGAATCATTTACTG CCTTTTGGAACAGGGGAAGGAAGCCCCTTCAACAGCTTGTGGCAGATGCC AACGACAAACGTGACCTCGACTGCCGCGATTCAAGAGGACTTCGGGAGAT CGGACAAAGATTGAGGGGCCTTAAGGTGAAGGCTGTTCATACAGGGATCG TGTATCGGGTGTACGGTTTTTCAGACCGTGGCGCCGATCGCATCACTTTC GAGTCTGATGGTCGCAAGGTTTCTATCTCTCAGTACTTTGCCGATACTTA TGGAATCAGGCTTAAAGAGGGTGGTGCCCCATGTGTTCGAACCCATCCTA AGAGGGATACGTTCTTACCCATGGAATTACTTGCTGTCGTTCCAAACCAG CGCGTAGCCGGTGTCTTGTCACAAGATGAGACCATGACAATGGTGAAAAC TGCAAGTACGAAACCTCATATCCGCAGGAGCAATGCCTCTAGGAAGATTC AGCAACTGAAGTACCATGAACACCCAACTTGCAGGGATTTCCGAGTCAAA GTCGATTCTAGCCTAGTCAAGTTGAAGGCTCGTGTTCTGCCGCCGCCAAT CATAAACTATGCCTCCGGGGCTGTGCGCCCCGCGAACGGACAATGGAGGG CGAAGAATGGAGTTGCAAGACCTGGGATCATTTTCTCGTGGGCTGTTTTA AATATGTCAAGAGTTCGAAGGGAAGAGATTCAGCAGTTTGTAAGGGATCT CACTTCGGCAATGGGACGAGCTGGATTAACGCTTCACCAGAAGACCCCCA AACTCTACAACGGCGATGAGAGAGACGTGGAACGGGAAATGCAACGTATT GCTCAAGAATACAGTCGCGATAAGACCTTGAAGATGCGCAAACCGGGTCT TCAGGTGCTCATCCTTATCAAGGAAAGGCAGGACTCGAGGGTTTATAACG CGATAAAACGCGAAGCAGACATAAACATGGGTATTGTTTCTCAGGTTTGC TTGGCGAAGCATTGCGGATCAAGGGCGCGGGGACGGGATATGTACTGCGA CAACCTTGTTCTCAAGATTAATGCGAAACTTGGAGGTCAGAATGGCCTTG TTAGTACATACGCGCAAGATAGGGAGAGTCGTATGCCTGATGTCAACTTT CTCACCGTCCCGCATATTATTCTTGGCGCTGATGTGACTCATCCAATGCC GGGTGGGAGAGGACCAAGTGTTGCGGCGCTGGTTGGTTCTCGGGACCGCA ATGGTCTCCAATTCTCGTCCTCAATTCGCTCACAAGCTGGACGGCAGGAA ATGATAACTGATATCGGAGACATGTTCAGGGAAGTCTATAGTGTTTGGTT CCATGCCTTCAACAAGAGCGTTCATGCGGGGAAGATTATCATGTTTCGGG ATGGTGTATCCGAGGGTCAGTTTGAGGAGGTTATGCAGCGTGAAGTATTT GCAATTCGTCGAGCTTGCATGGCGATAAGCGAAAAGTTGCGCCCAATGAT TACCTACATTATTGTGACGAAGCGCCACCACACACGGTTCTTCCCTGGTT CTAGGGACATTGCCGATAGATCTGGCAACATTCCTCCTGGAACCGTTATA GATTCTGACATCACGAGTAAGGAATACTACGACTTTTATCTCAACTCACA TGCAGGAATTCAAGGTACAAACAAGCCATCGAAGTATACCGTGCTTATTG ATGAGAACAAGATACAGCCGGATGCTCTGTATGGATTCATTTATCGATTA TCTCACTCCTTCGTGAGGTGCAATCGTCCTGTTTCTATGGTCAACAGTGC GTACTATGCGCACCTTTTGGCCTTCCGCGGACGAGCGTACTTGGGCGATG ATATGTCCGATACTGGTTCCTATGCCTCTGGTGGCAACTCTCAAATCCCA GCGGTGCCGATTGCCCATGGGATGTTGAAGGGTCACCTTTACTTTGTATG A back to top
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