Ggra3945.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3945.t1
Unique Name	Ggra3945.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:179921..181885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ37964
PFAMs	Methyltr_RsmB-F,Methyltr_RsmF_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14835
GOs	GO:0000027,GO:0000154,GO:0000470,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008169,GO:0008173,GO:0008284,GO:0008649,GO:0008757,GO:0009383,GO:0009451,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0016043,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042127,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0065003,GO:0065007,GO:0070013,GO:0070475,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:1901796,GO:1902531
Evalue	3.1e-152
EggNOG OGs	COG0144@1\|root,KOG1122@2759\|Eukaryota,37M2F@33090\|Viridiplantae,3GC52@35493\|Streptophyta
EC	2.1.1.310
Description	Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
COG category	A
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3945	Ggra3945	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 179921..181885 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3945.t1.start1	Ggra3945.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 179921..179923 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3945.t1.CDS1	Ggra3945.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 179921..181885 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3945.t1.exon1	Ggra3945.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 179921..181885 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3945.t1.stop1	Ggra3945.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 181883..181885 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3945.t1	Ggra3945.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 179921..181885 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:179921..181885+
coding sequence from alignment at tig00000908_pilon:179921..181885+

mRNA sequence

>Ggra3945.t1 ID=Ggra3945.t1|Name=Ggra3945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=655bp
MGGTGRARRRKRQLEHGTGLEHTNAKTVNQFDTGAGQRDRVRRRRLSYQL
DKAGKEQQEDPQISALVNRKKKRQDAQRKHHAAPQDSDDNGESAPAFSDE
NAKWLKPKTKPNSAATQSKQAMDLFASDKEDESGHEDEPSEKIERVEIVH
PNSNSTRDTAASRDEVGSHSENENDSESTDADHSSDSDDLPPDKLELASE
RILQERQQEAAEAEAELEDERKRAGDEREQFKLETGPLGRGGVQDDTELE
SATREDMLVRIRGILHVLADYKTRAEPDKARHEYIDALRTSVCKCFGYNE
ELVGMLMDVFPNAEIVDFMEASEAPRPLTIRTNTLRTRRRELAQALISRG
MNVDPIDKWSKVGLVVYESQVPVGATPEYLAGFYMIQSASSFLPVVALAP
KENEKIVDLAAAPGGKTTYIGALMNNTGVLVANDLRKDRIKALVSNVHRL
GLRNTVICNYDGLKIPTVFGSCFDRALLDAPCSGTGIISHDPAVKMNRRR
KDLENTTRIQKELILSAIDSVNSDSSTGGYIVYSTCSVLVEENEAVIDYA
LRNRDVKVVESGLSIGIPGFTRMRQHRFHPDLKLAKRIHPHIHNLDGFFV
CKLKKISERKGHSNGNIDDAQEENPREVVAKNIPAKQKVKPKLCEMETRS
RMAL*

spliced messenger RNA

>Ggra3945.t1 ID=Ggra3945.t1|Name=Ggra3945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000908_pilon:179921..181885+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGTACGGGAAGGGCTCGTCGCCGGAAGCGACAGCTTGAACACGG
CACCGGGTTGGAACACACCAACGCCAAGACGGTCAACCAGTTTGATACGG
GCGCTGGTCAACGCGACAGGGTGCGACGCAGACGTCTTTCGTATCAACTA
GACAAGGCAGGAAAGGAACAGCAAGAGGACCCACAGATCTCCGCTCTGGT
TAATCGCAAGAAGAAGAGACAAGATGCTCAAAGAAAACACCACGCTGCAC
CCCAGGACTCTGATGATAACGGTGAATCAGCCCCTGCGTTCTCAGACGAA
AACGCCAAGTGGCTCAAGCCGAAGACAAAACCCAACTCTGCTGCAACTCA
ATCAAAGCAAGCAATGGATTTATTCGCGAGTGATAAGGAAGATGAATCTG
GGCATGAGGATGAACCGTCGGAAAAAATTGAACGTGTAGAAATTGTCCAT
CCTAATTCTAATTCGACCCGAGATACCGCTGCAAGCAGAGATGAGGTCGG
CAGTCATTCTGAGAATGAAAACGATTCTGAGTCAACTGATGCAGACCATA
GTTCTGATAGCGATGACCTACCACCTGATAAACTAGAGCTTGCATCAGAG
AGAATTTTGCAAGAAAGGCAACAGGAAGCTGCTGAAGCAGAAGCAGAACT
TGAAGATGAACGAAAGCGGGCAGGCGACGAACGCGAACAATTCAAGCTTG
AAACGGGACCTCTTGGAAGGGGTGGCGTCCAGGACGATACAGAACTTGAA
TCTGCAACACGTGAGGATATGCTTGTTAGAATTCGAGGCATATTGCACGT
TCTTGCGGACTATAAAACCCGAGCGGAGCCAGACAAGGCCAGACATGAAT
ACATCGATGCTCTTCGGACCTCTGTTTGCAAATGCTTTGGATACAATGAG
GAGCTGGTCGGAATGCTAATGGACGTATTCCCGAATGCTGAGATTGTCGA
TTTTATGGAGGCATCTGAAGCACCTCGCCCACTGACTATCAGAACTAACA
CGCTAAGGACCAGACGAAGAGAGCTCGCTCAGGCTCTTATATCTCGCGGC
ATGAACGTAGACCCCATCGACAAATGGTCAAAAGTTGGCCTTGTTGTTTA
CGAATCCCAGGTTCCTGTTGGAGCGACACCTGAATATTTGGCAGGGTTTT
ATATGATTCAATCTGCCTCAAGCTTTTTGCCAGTTGTCGCTCTTGCTCCG
AAGGAGAACGAGAAGATTGTGGATTTAGCTGCAGCACCTGGTGGGAAGAC
AACGTACATCGGTGCTCTGATGAATAACACTGGCGTACTTGTGGCAAATG
ATCTAAGAAAAGATCGAATCAAAGCGCTGGTATCCAACGTGCACCGACTA
GGCCTTCGAAACACGGTCATTTGTAACTATGACGGGTTGAAAATCCCCAC
TGTGTTCGGTTCTTGTTTCGATCGTGCACTCTTAGACGCCCCATGTTCTG
GTACTGGAATCATTAGCCATGATCCTGCTGTGAAAATGAATCGACGGCGA
AAGGATCTTGAAAACACAACTAGGATACAGAAAGAATTAATTCTCTCCGC
TATTGACTCTGTGAATTCGGACTCTTCTACTGGGGGCTATATAGTCTATT
CTACTTGCTCGGTTCTCGTCGAAGAGAACGAAGCTGTTATAGATTATGCG
CTGCGGAATCGGGATGTTAAGGTCGTTGAATCGGGCCTATCCATAGGAAT
CCCTGGGTTCACTCGCATGCGGCAACACAGGTTTCATCCTGACCTGAAAC
TCGCGAAAAGAATACATCCCCATATTCATAACCTGGACGGCTTTTTTGTT
TGCAAACTTAAAAAGATATCGGAACGAAAGGGACATAGCAACGGGAATAT
TGATGATGCTCAGGAGGAAAATCCTAGAGAGGTCGTGGCAAAGAACATCC
CGGCAAAACAAAAGGTTAAGCCAAAGCTCTGCGAAATGGAGACAAGAAGT
CGAATGGCGCTTTGA

protein sequence of Ggra3945.t1

>Ggra3945.t1 ID=Ggra3945.t1|Name=Ggra3945.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=655bp
MGGTGRARRRKRQLEHGTGLEHTNAKTVNQFDTGAGQRDRVRRRRLSYQL
DKAGKEQQEDPQISALVNRKKKRQDAQRKHHAAPQDSDDNGESAPAFSDE
NAKWLKPKTKPNSAATQSKQAMDLFASDKEDESGHEDEPSEKIERVEIVH
PNSNSTRDTAASRDEVGSHSENENDSESTDADHSSDSDDLPPDKLELASE
RILQERQQEAAEAEAELEDERKRAGDEREQFKLETGPLGRGGVQDDTELE
SATREDMLVRIRGILHVLADYKTRAEPDKARHEYIDALRTSVCKCFGYNE
ELVGMLMDVFPNAEIVDFMEASEAPRPLTIRTNTLRTRRRELAQALISRG
MNVDPIDKWSKVGLVVYESQVPVGATPEYLAGFYMIQSASSFLPVVALAP
KENEKIVDLAAAPGGKTTYIGALMNNTGVLVANDLRKDRIKALVSNVHRL
GLRNTVICNYDGLKIPTVFGSCFDRALLDAPCSGTGIISHDPAVKMNRRR
KDLENTTRIQKELILSAIDSVNSDSSTGGYIVYSTCSVLVEENEAVIDYA
LRNRDVKVVESGLSIGIPGFTRMRQHRFHPDLKLAKRIHPHIHNLDGFFV
CKLKKISERKGHSNGNIDDAQEENPREVVAKNIPAKQKVKPKLCEMETRS
RMAL*

mRNA from alignment at tig00000908_pilon:179921..181885+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3945.t1 ID=Ggra3945.t1|Name=Ggra3945.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000908_pilon:179921..181885+ (Gracilaria gracilis GNS1m male)
ATGGGAGGTACGGGAAGGGCTCGTCGCCGGAAGCGACAGCTTGAACACGG
CACCGGGTTGGAACACACCAACGCCAAGACGGTCAACCAGTTTGATACGG
GCGCTGGTCAACGCGACAGGGTGCGACGCAGACGTCTTTCGTATCAACTA
GACAAGGCAGGAAAGGAACAGCAAGAGGACCCACAGATCTCCGCTCTGGT
TAATCGCAAGAAGAAGAGACAAGATGCTCAAAGAAAACACCACGCTGCAC
CCCAGGACTCTGATGATAACGGTGAATCAGCCCCTGCGTTCTCAGACGAA
AACGCCAAGTGGCTCAAGCCGAAGACAAAACCCAACTCTGCTGCAACTCA
ATCAAAGCAAGCAATGGATTTATTCGCGAGTGATAAGGAAGATGAATCTG
GGCATGAGGATGAACCGTCGGAAAAAATTGAACGTGTAGAAATTGTCCAT
CCTAATTCTAATTCGACCCGAGATACCGCTGCAAGCAGAGATGAGGTCGG
CAGTCATTCTGAGAATGAAAACGATTCTGAGTCAACTGATGCAGACCATA
GTTCTGATAGCGATGACCTACCACCTGATAAACTAGAGCTTGCATCAGAG
AGAATTTTGCAAGAAAGGCAACAGGAAGCTGCTGAAGCAGAAGCAGAACT
TGAAGATGAACGAAAGCGGGCAGGCGACGAACGCGAACAATTCAAGCTTG
AAACGGGACCTCTTGGAAGGGGTGGCGTCCAGGACGATACAGAACTTGAA
TCTGCAACACGTGAGGATATGCTTGTTAGAATTCGAGGCATATTGCACGT
TCTTGCGGACTATAAAACCCGAGCGGAGCCAGACAAGGCCAGACATGAAT
ACATCGATGCTCTTCGGACCTCTGTTTGCAAATGCTTTGGATACAATGAG
GAGCTGGTCGGAATGCTAATGGACGTATTCCCGAATGCTGAGATTGTCGA
TTTTATGGAGGCATCTGAAGCACCTCGCCCACTGACTATCAGAACTAACA
CGCTAAGGACCAGACGAAGAGAGCTCGCTCAGGCTCTTATATCTCGCGGC
ATGAACGTAGACCCCATCGACAAATGGTCAAAAGTTGGCCTTGTTGTTTA
CGAATCCCAGGTTCCTGTTGGAGCGACACCTGAATATTTGGCAGGGTTTT
ATATGATTCAATCTGCCTCAAGCTTTTTGCCAGTTGTCGCTCTTGCTCCG
AAGGAGAACGAGAAGATTGTGGATTTAGCTGCAGCACCTGGTGGGAAGAC
AACGTACATCGGTGCTCTGATGAATAACACTGGCGTACTTGTGGCAAATG
ATCTAAGAAAAGATCGAATCAAAGCGCTGGTATCCAACGTGCACCGACTA
GGCCTTCGAAACACGGTCATTTGTAACTATGACGGGTTGAAAATCCCCAC
TGTGTTCGGTTCTTGTTTCGATCGTGCACTCTTAGACGCCCCATGTTCTG
GTACTGGAATCATTAGCCATGATCCTGCTGTGAAAATGAATCGACGGCGA
AAGGATCTTGAAAACACAACTAGGATACAGAAAGAATTAATTCTCTCCGC
TATTGACTCTGTGAATTCGGACTCTTCTACTGGGGGCTATATAGTCTATT
CTACTTGCTCGGTTCTCGTCGAAGAGAACGAAGCTGTTATAGATTATGCG
CTGCGGAATCGGGATGTTAAGGTCGTTGAATCGGGCCTATCCATAGGAAT
CCCTGGGTTCACTCGCATGCGGCAACACAGGTTTCATCCTGACCTGAAAC
TCGCGAAAAGAATACATCCCCATATTCATAACCTGGACGGCTTTTTTGTT
TGCAAACTTAAAAAGATATCGGAACGAAAGGGACATAGCAACGGGAATAT
TGATGATGCTCAGGAGGAAAATCCTAGAGAGGTCGTGGCAAAGAACATCC
CGGCAAAACAAAAGGTTAAGCCAAAGCTCTGCGAAATGGAGACAAGAAGT
CGAATGGCGCTTTGA

Coding sequence (CDS) from alignment at tig00000908_pilon:179921..181885+

>Ggra3945.t1 ID=Ggra3945.t1|Name=Ggra3945.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1965bp|location=Sequence derived from alignment at tig00000908_pilon:179921..181885+ (Gracilaria gracilis GNS1m male)
ATGGGAGGTACGGGAAGGGCTCGTCGCCGGAAGCGACAGCTTGAACACGG
CACCGGGTTGGAACACACCAACGCCAAGACGGTCAACCAGTTTGATACGG
GCGCTGGTCAACGCGACAGGGTGCGACGCAGACGTCTTTCGTATCAACTA
GACAAGGCAGGAAAGGAACAGCAAGAGGACCCACAGATCTCCGCTCTGGT
TAATCGCAAGAAGAAGAGACAAGATGCTCAAAGAAAACACCACGCTGCAC
CCCAGGACTCTGATGATAACGGTGAATCAGCCCCTGCGTTCTCAGACGAA
AACGCCAAGTGGCTCAAGCCGAAGACAAAACCCAACTCTGCTGCAACTCA
ATCAAAGCAAGCAATGGATTTATTCGCGAGTGATAAGGAAGATGAATCTG
GGCATGAGGATGAACCGTCGGAAAAAATTGAACGTGTAGAAATTGTCCAT
CCTAATTCTAATTCGACCCGAGATACCGCTGCAAGCAGAGATGAGGTCGG
CAGTCATTCTGAGAATGAAAACGATTCTGAGTCAACTGATGCAGACCATA
GTTCTGATAGCGATGACCTACCACCTGATAAACTAGAGCTTGCATCAGAG
AGAATTTTGCAAGAAAGGCAACAGGAAGCTGCTGAAGCAGAAGCAGAACT
TGAAGATGAACGAAAGCGGGCAGGCGACGAACGCGAACAATTCAAGCTTG
AAACGGGACCTCTTGGAAGGGGTGGCGTCCAGGACGATACAGAACTTGAA
TCTGCAACACGTGAGGATATGCTTGTTAGAATTCGAGGCATATTGCACGT
TCTTGCGGACTATAAAACCCGAGCGGAGCCAGACAAGGCCAGACATGAAT
ACATCGATGCTCTTCGGACCTCTGTTTGCAAATGCTTTGGATACAATGAG
GAGCTGGTCGGAATGCTAATGGACGTATTCCCGAATGCTGAGATTGTCGA
TTTTATGGAGGCATCTGAAGCACCTCGCCCACTGACTATCAGAACTAACA
CGCTAAGGACCAGACGAAGAGAGCTCGCTCAGGCTCTTATATCTCGCGGC
ATGAACGTAGACCCCATCGACAAATGGTCAAAAGTTGGCCTTGTTGTTTA
CGAATCCCAGGTTCCTGTTGGAGCGACACCTGAATATTTGGCAGGGTTTT
ATATGATTCAATCTGCCTCAAGCTTTTTGCCAGTTGTCGCTCTTGCTCCG
AAGGAGAACGAGAAGATTGTGGATTTAGCTGCAGCACCTGGTGGGAAGAC
AACGTACATCGGTGCTCTGATGAATAACACTGGCGTACTTGTGGCAAATG
ATCTAAGAAAAGATCGAATCAAAGCGCTGGTATCCAACGTGCACCGACTA
GGCCTTCGAAACACGGTCATTTGTAACTATGACGGGTTGAAAATCCCCAC
TGTGTTCGGTTCTTGTTTCGATCGTGCACTCTTAGACGCCCCATGTTCTG
GTACTGGAATCATTAGCCATGATCCTGCTGTGAAAATGAATCGACGGCGA
AAGGATCTTGAAAACACAACTAGGATACAGAAAGAATTAATTCTCTCCGC
TATTGACTCTGTGAATTCGGACTCTTCTACTGGGGGCTATATAGTCTATT
CTACTTGCTCGGTTCTCGTCGAAGAGAACGAAGCTGTTATAGATTATGCG
CTGCGGAATCGGGATGTTAAGGTCGTTGAATCGGGCCTATCCATAGGAAT
CCCTGGGTTCACTCGCATGCGGCAACACAGGTTTCATCCTGACCTGAAAC
TCGCGAAAAGAATACATCCCCATATTCATAACCTGGACGGCTTTTTTGTT
TGCAAACTTAAAAAGATATCGGAACGAAAGGGACATAGCAACGGGAATAT
TGATGATGCTCAGGAGGAAAATCCTAGAGAGGTCGTGGCAAAGAACATCC
CGGCAAAACAAAAGGTTAAGCCAAAGCTCTGCGAAATGGAGACAAGAAGT
CGAATGGCGCTTTGA