Ggra3943.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3943.t1
Unique NameGgra3943.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:175271..176821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705810.1
Max annot lvl2759|Eukaryota
Evalue1.29e-40
EggNOG OGs2CTQS@1|root,2S4CA@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3943Ggra3943Gracilaria gracilis GNS1m malegenetig00000908_pilon 175271..176821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3943.t1Ggra3943.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 175271..176821 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3943.t1.stop1Ggra3943.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 175271..175273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3943.t1.CDS1Ggra3943.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 175271..176635 -
Ggra3943.t1.CDS2Ggra3943.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 176810..176821 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3943.t1.exon1Ggra3943.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 175271..176635 -
Ggra3943.t1.exon2Ggra3943.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 176810..176821 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3943.t1.intron1Ggra3943.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 176636..176809 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3943.t1.start1Ggra3943.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 176819..176821 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3943.t1 ID=Ggra3943.t1|Name=Ggra3943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp
MSAYSSRCHNPGLTFITNVAVWRHPISSFRISSCASANYPRRVSRRKPQG
YWKDIGNLKKELMDFHEKNAKPDPYFMPSAKLLRSRGRRDLDNAITNFGG
YRKVAQILGWSPKSRKRVSGYWDEFSNLQEELMTFIKNSPLELTPGTMPT
LAQLRLSGRSDLERAIQKHQGVAAVAEKLQLRRVVESKPKKYWSDWKAIE
KEVLDFLAKQSESQEDQINTEVTRPKTNKMPSLQELRAAGKGDLAAGITK
YHGGFRAVAAKLKLVPKKKTDFYYKEFYNLAMELYRFSRVNGIDGAMPTS
ALLKEVNRTDLAAAIAYWGGMSEVSQRLGLQYQIRTREALKDWTVFRRNL
LGFMKTHGDLTEIPSSSVLQRFDRAGLYQAILHHGGSKAVADRIGVKRNY
WQDFHCVGYELLSFIELHGTEGVIPTEADFLLVRRNSLSVAVAKFGRSQV
ARRLGLKD*
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spliced messenger RNA

>Ggra3943.t1 ID=Ggra3943.t1|Name=Ggra3943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1377bp|location=Sequence derived from alignment at tig00000908_pilon:175271..176821- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCATATTCATCTCGCTGCCATAATCCAGGATTGACCTTCATCAC
GAATGTTGCCGTATGGCGTCATCCAATTTCATCGTTTCGAATATCAAGCT
GTGCCTCTGCGAATTATCCACGAAGAGTATCCAGGCGGAAGCCACAAGGA
TATTGGAAAGACATAGGAAACTTAAAGAAGGAACTTATGGACTTCCACGA
GAAAAATGCAAAGCCTGATCCATATTTTATGCCGAGTGCGAAACTATTGC
GGAGCCGCGGACGCAGGGATCTCGACAATGCAATTACGAACTTTGGTGGC
TACCGTAAAGTAGCACAAATCCTTGGATGGTCTCCGAAGTCCAGGAAAAG
AGTGTCTGGATATTGGGATGAGTTCTCAAACTTACAAGAAGAACTTATGA
CGTTCATCAAGAATTCTCCTTTAGAACTGACACCGGGAACGATGCCAACC
TTGGCACAACTCCGATTATCTGGACGTTCTGATCTAGAAAGAGCTATTCA
AAAGCACCAGGGCGTGGCAGCAGTAGCAGAAAAATTGCAACTTCGAAGAG
TGGTTGAAAGCAAGCCGAAGAAATATTGGAGTGACTGGAAGGCGATTGAG
AAAGAGGTGCTGGACTTCTTGGCGAAACAATCAGAATCACAAGAAGACCA
AATCAATACCGAGGTTACAAGACCAAAAACAAATAAAATGCCTTCACTGC
AAGAGCTTCGCGCTGCTGGAAAGGGAGATTTAGCAGCAGGTATCACGAAG
TACCATGGCGGATTTCGCGCGGTTGCCGCCAAGCTTAAGCTTGTGCCAAA
GAAGAAGACTGATTTCTATTACAAAGAGTTCTACAACTTGGCCATGGAGT
TGTATCGTTTTTCCAGAGTAAACGGTATTGATGGAGCAATGCCAACCTCT
GCTCTTCTCAAGGAAGTGAATCGGACAGACTTGGCAGCTGCTATTGCTTA
TTGGGGGGGAATGTCAGAAGTGTCTCAACGACTGGGTTTGCAGTATCAGA
TTCGAACAAGAGAAGCTCTGAAGGACTGGACTGTATTTCGGAGAAATCTT
CTGGGATTCATGAAAACACACGGGGATCTTACTGAGATTCCGTCTTCCAG
TGTGCTGCAGCGATTCGACCGAGCCGGTCTTTACCAGGCAATCTTACATC
ATGGAGGCTCCAAGGCCGTAGCAGATAGAATAGGAGTGAAGAGGAATTAT
TGGCAAGATTTCCACTGCGTTGGCTATGAGCTACTAAGCTTCATAGAGTT
ACACGGAACGGAAGGCGTGATACCAACTGAAGCAGATTTTTTACTAGTTC
GTCGCAATTCCTTGAGTGTTGCCGTTGCCAAGTTTGGTCGTTCTCAAGTA
GCCAGGCGACTGGGACTAAAGGATTAA
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protein sequence of Ggra3943.t1

>Ggra3943.t1 ID=Ggra3943.t1|Name=Ggra3943.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=459bp
MSAYSSRCHNPGLTFITNVAVWRHPISSFRISSCASANYPRRVSRRKPQG
YWKDIGNLKKELMDFHEKNAKPDPYFMPSAKLLRSRGRRDLDNAITNFGG
YRKVAQILGWSPKSRKRVSGYWDEFSNLQEELMTFIKNSPLELTPGTMPT
LAQLRLSGRSDLERAIQKHQGVAAVAEKLQLRRVVESKPKKYWSDWKAIE
KEVLDFLAKQSESQEDQINTEVTRPKTNKMPSLQELRAAGKGDLAAGITK
YHGGFRAVAAKLKLVPKKKTDFYYKEFYNLAMELYRFSRVNGIDGAMPTS
ALLKEVNRTDLAAAIAYWGGMSEVSQRLGLQYQIRTREALKDWTVFRRNL
LGFMKTHGDLTEIPSSSVLQRFDRAGLYQAILHHGGSKAVADRIGVKRNY
WQDFHCVGYELLSFIELHGTEGVIPTEADFLLVRRNSLSVAVAKFGRSQV
ARRLGLKD*
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mRNA from alignment at tig00000908_pilon:175271..176821-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3943.t1 ID=Ggra3943.t1|Name=Ggra3943.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000908_pilon:175271..176821- (Gracilaria gracilis GNS1m male)
ATGAGCGCATATGTAAGTTCTCTACCCGGCTTGTTTTCACACAGGTCTCC
GCTTTTCGTATGCATCCCCGACCGAACAACCCTGGGACGCAGGCTGAGGT
CCTGCCTTAACAAGCGTTGACTGTTGATCGACAAAACATTTTTGACACAC
GTCTCACCGGTCATGCTTTGCGCAATTCTACCACAGTCATCTCGCTGCCA
TAATCCAGGATTGACCTTCATCACGAATGTTGCCGTATGGCGTCATCCAA
TTTCATCGTTTCGAATATCAAGCTGTGCCTCTGCGAATTATCCACGAAGA
GTATCCAGGCGGAAGCCACAAGGATATTGGAAAGACATAGGAAACTTAAA
GAAGGAACTTATGGACTTCCACGAGAAAAATGCAAAGCCTGATCCATATT
TTATGCCGAGTGCGAAACTATTGCGGAGCCGCGGACGCAGGGATCTCGAC
AATGCAATTACGAACTTTGGTGGCTACCGTAAAGTAGCACAAATCCTTGG
ATGGTCTCCGAAGTCCAGGAAAAGAGTGTCTGGATATTGGGATGAGTTCT
CAAACTTACAAGAAGAACTTATGACGTTCATCAAGAATTCTCCTTTAGAA
CTGACACCGGGAACGATGCCAACCTTGGCACAACTCCGATTATCTGGACG
TTCTGATCTAGAAAGAGCTATTCAAAAGCACCAGGGCGTGGCAGCAGTAG
CAGAAAAATTGCAACTTCGAAGAGTGGTTGAAAGCAAGCCGAAGAAATAT
TGGAGTGACTGGAAGGCGATTGAGAAAGAGGTGCTGGACTTCTTGGCGAA
ACAATCAGAATCACAAGAAGACCAAATCAATACCGAGGTTACAAGACCAA
AAACAAATAAAATGCCTTCACTGCAAGAGCTTCGCGCTGCTGGAAAGGGA
GATTTAGCAGCAGGTATCACGAAGTACCATGGCGGATTTCGCGCGGTTGC
CGCCAAGCTTAAGCTTGTGCCAAAGAAGAAGACTGATTTCTATTACAAAG
AGTTCTACAACTTGGCCATGGAGTTGTATCGTTTTTCCAGAGTAAACGGT
ATTGATGGAGCAATGCCAACCTCTGCTCTTCTCAAGGAAGTGAATCGGAC
AGACTTGGCAGCTGCTATTGCTTATTGGGGGGGAATGTCAGAAGTGTCTC
AACGACTGGGTTTGCAGTATCAGATTCGAACAAGAGAAGCTCTGAAGGAC
TGGACTGTATTTCGGAGAAATCTTCTGGGATTCATGAAAACACACGGGGA
TCTTACTGAGATTCCGTCTTCCAGTGTGCTGCAGCGATTCGACCGAGCCG
GTCTTTACCAGGCAATCTTACATCATGGAGGCTCCAAGGCCGTAGCAGAT
AGAATAGGAGTGAAGAGGAATTATTGGCAAGATTTCCACTGCGTTGGCTA
TGAGCTACTAAGCTTCATAGAGTTACACGGAACGGAAGGCGTGATACCAA
CTGAAGCAGATTTTTTACTAGTTCGTCGCAATTCCTTGAGTGTTGCCGTT
GCCAAGTTTGGTCGTTCTCAAGTAGCCAGGCGACTGGGACTAAAGGATTA
A
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Coding sequence (CDS) from alignment at tig00000908_pilon:175271..176821-

>Ggra3943.t1 ID=Ggra3943.t1|Name=Ggra3943.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1377bp|location=Sequence derived from alignment at tig00000908_pilon:175271..176821- (Gracilaria gracilis GNS1m male)
ATGAGCGCATATTCATCTCGCTGCCATAATCCAGGATTGACCTTCATCAC
GAATGTTGCCGTATGGCGTCATCCAATTTCATCGTTTCGAATATCAAGCT
GTGCCTCTGCGAATTATCCACGAAGAGTATCCAGGCGGAAGCCACAAGGA
TATTGGAAAGACATAGGAAACTTAAAGAAGGAACTTATGGACTTCCACGA
GAAAAATGCAAAGCCTGATCCATATTTTATGCCGAGTGCGAAACTATTGC
GGAGCCGCGGACGCAGGGATCTCGACAATGCAATTACGAACTTTGGTGGC
TACCGTAAAGTAGCACAAATCCTTGGATGGTCTCCGAAGTCCAGGAAAAG
AGTGTCTGGATATTGGGATGAGTTCTCAAACTTACAAGAAGAACTTATGA
CGTTCATCAAGAATTCTCCTTTAGAACTGACACCGGGAACGATGCCAACC
TTGGCACAACTCCGATTATCTGGACGTTCTGATCTAGAAAGAGCTATTCA
AAAGCACCAGGGCGTGGCAGCAGTAGCAGAAAAATTGCAACTTCGAAGAG
TGGTTGAAAGCAAGCCGAAGAAATATTGGAGTGACTGGAAGGCGATTGAG
AAAGAGGTGCTGGACTTCTTGGCGAAACAATCAGAATCACAAGAAGACCA
AATCAATACCGAGGTTACAAGACCAAAAACAAATAAAATGCCTTCACTGC
AAGAGCTTCGCGCTGCTGGAAAGGGAGATTTAGCAGCAGGTATCACGAAG
TACCATGGCGGATTTCGCGCGGTTGCCGCCAAGCTTAAGCTTGTGCCAAA
GAAGAAGACTGATTTCTATTACAAAGAGTTCTACAACTTGGCCATGGAGT
TGTATCGTTTTTCCAGAGTAAACGGTATTGATGGAGCAATGCCAACCTCT
GCTCTTCTCAAGGAAGTGAATCGGACAGACTTGGCAGCTGCTATTGCTTA
TTGGGGGGGAATGTCAGAAGTGTCTCAACGACTGGGTTTGCAGTATCAGA
TTCGAACAAGAGAAGCTCTGAAGGACTGGACTGTATTTCGGAGAAATCTT
CTGGGATTCATGAAAACACACGGGGATCTTACTGAGATTCCGTCTTCCAG
TGTGCTGCAGCGATTCGACCGAGCCGGTCTTTACCAGGCAATCTTACATC
ATGGAGGCTCCAAGGCCGTAGCAGATAGAATAGGAGTGAAGAGGAATTAT
TGGCAAGATTTCCACTGCGTTGGCTATGAGCTACTAAGCTTCATAGAGTT
ACACGGAACGGAAGGCGTGATACCAACTGAAGCAGATTTTTTACTAGTTC
GTCGCAATTCCTTGAGTGTTGCCGTTGCCAAGTTTGGTCGTTCTCAAGTA
GCCAGGCGACTGGGACTAAAGGATTAA
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