Ggra3941.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3941.t1
Unique NameGgra3941.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:171470..172164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3941Ggra3941Gracilaria gracilis GNS1m malegenetig00000908_pilon 171470..172164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3941.t1Ggra3941.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 171470..172164 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3941.t1.stop1Ggra3941.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 171470..171472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3941.t1.CDS1Ggra3941.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 171470..171547 -
Ggra3941.t1.CDS2Ggra3941.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 171673..172164 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3941.t1.exon1Ggra3941.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 171470..171547 -
Ggra3941.t1.exon2Ggra3941.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 171673..172164 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3941.t1.intron1Ggra3941.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 171548..171672 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3941.t1.start1Ggra3941.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 172162..172164 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3941.t1 ID=Ggra3941.t1|Name=Ggra3941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MGPEANPQKQIVSMVPSFQHLLHHIERRSDNEAFKPLWDLRTKEATGHFF
ASPDSHASPSCSSISSARADSVEPIAEPDRNIYSSRQDFWTIVLGPSQTV
EKPEKKIQLSDVLKKPHACASCPLRFKKRCNLQSHVRSVHEKRRPFCCAV
CFRRFGRKSNCAKHMRLVHRLRDSEVRVLPAEVSHGRKL*
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spliced messenger RNA

>Ggra3941.t1 ID=Ggra3941.t1|Name=Ggra3941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000908_pilon:171470..172164- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACCAGAAGCGAATCCCCAGAAGCAAATTGTTTCCATGGTTCCGAG
TTTCCAACACTTGTTGCATCATATTGAACGCAGGTCGGATAATGAAGCAT
TTAAACCTTTGTGGGATCTGAGAACCAAGGAAGCTACAGGTCATTTCTTT
GCATCTCCTGATTCACACGCCTCGCCATCTTGTTCCAGTATATCAAGTGC
CAGAGCTGATTCCGTTGAACCTATTGCGGAACCGGACAGAAACATCTACT
CATCACGGCAAGACTTTTGGACGATCGTTTTGGGGCCATCACAGACTGTG
GAGAAGCCGGAGAAGAAAATCCAACTATCAGATGTGCTGAAAAAGCCACA
CGCCTGCGCCAGTTGCCCTCTGCGCTTCAAGAAACGCTGCAATCTTCAAT
CCCATGTCAGAAGCGTCCATGAGAAGCGGCGCCCATTTTGCTGCGCCGTG
TGCTTCCGAAGGTTTGGGAGAAAGTCTAACTGTGCTAAACATATGCGCCT
TGTACATAGACTCCGTGATTCGGAGGTAAGGGTGCTACCGGCCGAAGTTT
CTCATGGTCGTAAGTTGTGA
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protein sequence of Ggra3941.t1

>Ggra3941.t1 ID=Ggra3941.t1|Name=Ggra3941.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MGPEANPQKQIVSMVPSFQHLLHHIERRSDNEAFKPLWDLRTKEATGHFF
ASPDSHASPSCSSISSARADSVEPIAEPDRNIYSSRQDFWTIVLGPSQTV
EKPEKKIQLSDVLKKPHACASCPLRFKKRCNLQSHVRSVHEKRRPFCCAV
CFRRFGRKSNCAKHMRLVHRLRDSEVRVLPAEVSHGRKL*
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mRNA from alignment at tig00000908_pilon:171470..172164-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3941.t1 ID=Ggra3941.t1|Name=Ggra3941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=695bp|location=Sequence derived from alignment at tig00000908_pilon:171470..172164- (Gracilaria gracilis GNS1m male)
ATGGGACCAGAAGCGAATCCCCAGAAGCAAATTGTTTCCATGGTTCCGAG
TTTCCAACACTTGTTGCATCATATTGAACGCAGGTCGGATAATGAAGCAT
TTAAACCTTTGTGGGATCTGAGAACCAAGGAAGCTACAGGTCATTTCTTT
GCATCTCCTGATTCACACGCCTCGCCATCTTGTTCCAGTATATCAAGTGC
CAGAGCTGATTCCGTTGAACCTATTGCGGAACCGGACAGAAACATCTACT
CATCACGGCAAGACTTTTGGACGATCGTTTTGGGGCCATCACAGACTGTG
GAGAAGCCGGAGAAGAAAATCCAACTATCAGATGTGCTGAAAAAGCCACA
CGCCTGCGCCAGTTGCCCTCTGCGCTTCAAGAAACGCTGCAATCTTCAAT
CCCATGTCAGAAGCGTCCATGAGAAGCGGCGCCCATTTTGCTGCGCCGTG
TGCTTCCGAAGGTTTGGGAGAAAGTCTAACTGTGCTAAACATGTAAGTAG
ACCTATATCTTGAACACGAATGAGTTTCTTGTTCCACCTCGACCTTTGCT
AAAGGTGAAAGAATTGACGCCATATCGTTCTTCTGACTCACAGTATTTGT
TTTTCGTCGAACCGCAGATGCGCCTTGTACATAGACTCCGTGATTCGGAG
GTAAGGGTGCTACCGGCCGAAGTTTCTCATGGTCGTAAGTTGTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:171470..172164-

>Ggra3941.t1 ID=Ggra3941.t1|Name=Ggra3941.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000908_pilon:171470..172164- (Gracilaria gracilis GNS1m male)
ATGGGACCAGAAGCGAATCCCCAGAAGCAAATTGTTTCCATGGTTCCGAG
TTTCCAACACTTGTTGCATCATATTGAACGCAGGTCGGATAATGAAGCAT
TTAAACCTTTGTGGGATCTGAGAACCAAGGAAGCTACAGGTCATTTCTTT
GCATCTCCTGATTCACACGCCTCGCCATCTTGTTCCAGTATATCAAGTGC
CAGAGCTGATTCCGTTGAACCTATTGCGGAACCGGACAGAAACATCTACT
CATCACGGCAAGACTTTTGGACGATCGTTTTGGGGCCATCACAGACTGTG
GAGAAGCCGGAGAAGAAAATCCAACTATCAGATGTGCTGAAAAAGCCACA
CGCCTGCGCCAGTTGCCCTCTGCGCTTCAAGAAACGCTGCAATCTTCAAT
CCCATGTCAGAAGCGTCCATGAGAAGCGGCGCCCATTTTGCTGCGCCGTG
TGCTTCCGAAGGTTTGGGAGAAAGTCTAACTGTGCTAAACATATGCGCCT
TGTACATAGACTCCGTGATTCGGAGGTAAGGGTGCTACCGGCCGAAGTTT
CTCATGGTCGTAAGTTGTGA
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