Ggra3940.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3940.t1
Unique NameGgra3940.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:169215..170793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000014331
PFAMsPkinase
Max annot lvl121069|Pythiales
Evalue3.82e-118
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota,1MBGR@121069|Pythiales
DescriptionSporangia induced mitogen-activated protein kinase. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3940Ggra3940Gracilaria gracilis GNS1m malegenetig00000908_pilon 169215..170793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3940.t1Ggra3940.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 169215..170793 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3940.t1.start1Ggra3940.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 169215..169217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3940.t1.CDS1Ggra3940.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 169215..169792 +
Ggra3940.t1.CDS2Ggra3940.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 169911..169965 +
Ggra3940.t1.CDS3Ggra3940.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000908_pilon 170125..170793 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3940.t1.exon1Ggra3940.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 169215..169792 +
Ggra3940.t1.exon2Ggra3940.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 169911..169965 +
Ggra3940.t1.exon3Ggra3940.t1.exon3Gracilaria gracilis GNS1m maleexontig00000908_pilon 170125..170793 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3940.t1.intron1Ggra3940.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 169793..169910 +
Ggra3940.t1.intron2Ggra3940.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000908_pilon 169966..170124 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3940.t1.stop1Ggra3940.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 170791..170793 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3940.t1 ID=Ggra3940.t1|Name=Ggra3940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MKNKNIKQWVVNKRKSITDIFVNGRPNIEEDSPSAMDMDSPSPESAFSSQ
HPPPIPNKTVFFAKGNPFRVDPRYSYIRTLGHGAYGVVCAANDSVQQRKV
AVKKIAGVFEDLTDAKRIIREIRLLGGMNHENVLSIVDIDEPEHYESFAD
VYIVTELMDTDLHKLLQSSHPLVESQRKYFAYQMLRALRYIHSASVLHRD
LKPANVLVSETCDIKICDFGLARYLDPADAAAHGMTEYVVTRWYRAPELL
LACDEYDAAIDMWSVGCVIAELYSRKPIFPGRDVKNQIEIICSVVGKPQG
HEIQFIKNYNAKDFLTRLAPSNRQDFRRLVPGAGPAAIDLVDRLLQFDPR
KRLSAEEALNHPYVRDYRDVASEKVAVHLNYNTLEPPNEQKLGRDGIRRL
MWNEILKFHPQARFREPQSAKDAELKVNYMTSL*
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spliced messenger RNA

>Ggra3940.t1 ID=Ggra3940.t1|Name=Ggra3940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000908_pilon:169215..170793+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAACAAGAACATAAAGCAATGGGTAGTTAACAAGAGGAAAAGCAT
CACTGATATATTCGTCAACGGTCGCCCAAACATCGAAGAAGATTCTCCAT
CCGCCATGGACATGGACAGTCCATCTCCGGAATCGGCGTTTTCTTCGCAA
CATCCCCCGCCAATACCTAACAAGACAGTGTTCTTTGCGAAGGGGAACCC
TTTCCGCGTCGACCCCAGATACTCCTACATTCGCACCCTTGGCCATGGAG
CATATGGTGTGGTCTGTGCAGCAAATGACTCTGTTCAGCAACGAAAAGTC
GCTGTCAAGAAGATTGCTGGCGTCTTTGAAGACCTTACAGATGCCAAACG
CATTATCCGAGAGATTCGGCTACTTGGAGGCATGAACCATGAGAACGTTT
TGAGCATCGTCGACATTGATGAGCCGGAGCACTATGAAAGTTTTGCAGAT
GTCTACATCGTTACCGAGCTTATGGACACGGACCTGCATAAGTTGCTTCA
ATCTTCCCATCCTTTGGTGGAATCTCAGAGGAAGTATTTCGCATACCAAA
TGCTTCGGGCGTTGCGATACATTCATAGTGCAAGTGTTCTGCACCGGGAC
CTAAAACCAGCGAACGTATTGGTCTCAGAAACATGTGATATCAAAATATG
TGACTTTGGACTTGCTAGGTATCTTGATCCTGCTGACGCAGCTGCTCACG
GAATGACTGAATATGTCGTTACCAGATGGTACCGAGCTCCTGAGTTGCTT
CTCGCATGCGACGAATACGATGCCGCAATCGACATGTGGAGCGTTGGCTG
TGTAATAGCTGAGCTCTACTCAAGGAAACCGATATTCCCAGGGCGCGATG
TTAAGAATCAGATAGAGATTATTTGCTCCGTTGTCGGGAAGCCTCAAGGA
CACGAAATCCAATTCATTAAGAACTACAACGCCAAAGACTTTCTCACACG
TTTGGCTCCGAGCAATCGTCAAGACTTTCGAAGGCTGGTTCCTGGAGCCG
GTCCAGCTGCGATAGACCTTGTGGACAGGCTGTTGCAGTTTGATCCCAGG
AAACGGCTATCCGCAGAAGAGGCATTGAATCATCCATATGTCCGGGACTA
TAGAGACGTGGCTTCGGAGAAAGTCGCAGTTCATTTAAACTACAACACTT
TGGAGCCTCCCAACGAACAGAAGCTCGGAAGGGATGGAATCCGCAGGCTT
ATGTGGAATGAGATTCTCAAATTTCACCCACAAGCACGGTTTCGCGAGCC
TCAAAGCGCCAAAGATGCAGAACTGAAAGTGAACTATATGACATCGCTCT
AG
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protein sequence of Ggra3940.t1

>Ggra3940.t1 ID=Ggra3940.t1|Name=Ggra3940.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MKNKNIKQWVVNKRKSITDIFVNGRPNIEEDSPSAMDMDSPSPESAFSSQ
HPPPIPNKTVFFAKGNPFRVDPRYSYIRTLGHGAYGVVCAANDSVQQRKV
AVKKIAGVFEDLTDAKRIIREIRLLGGMNHENVLSIVDIDEPEHYESFAD
VYIVTELMDTDLHKLLQSSHPLVESQRKYFAYQMLRALRYIHSASVLHRD
LKPANVLVSETCDIKICDFGLARYLDPADAAAHGMTEYVVTRWYRAPELL
LACDEYDAAIDMWSVGCVIAELYSRKPIFPGRDVKNQIEIICSVVGKPQG
HEIQFIKNYNAKDFLTRLAPSNRQDFRRLVPGAGPAAIDLVDRLLQFDPR
KRLSAEEALNHPYVRDYRDVASEKVAVHLNYNTLEPPNEQKLGRDGIRRL
MWNEILKFHPQARFREPQSAKDAELKVNYMTSL*
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mRNA from alignment at tig00000908_pilon:169215..170793+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3940.t1 ID=Ggra3940.t1|Name=Ggra3940.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1579bp|location=Sequence derived from alignment at tig00000908_pilon:169215..170793+ (Gracilaria gracilis GNS1m male)
ATGAAGAACAAGAACATAAAGCAATGGGTAGTTAACAAGAGGAAAAGCAT
CACTGATATATTCGTCAACGGTCGCCCAAACATCGAAGAAGATTCTCCAT
CCGCCATGGACATGGACAGTCCATCTCCGGAATCGGCGTTTTCTTCGCAA
CATCCCCCGCCAATACCTAACAAGACAGTGTTCTTTGCGAAGGGGAACCC
TTTCCGCGTCGACCCCAGATACTCCTACATTCGCACCCTTGGCCATGGAG
CATATGGTGTGGTCTGTGCAGCAAATGACTCTGTTCAGCAACGAAAAGTC
GCTGTCAAGAAGATTGCTGGCGTCTTTGAAGACCTTACAGATGCCAAACG
CATTATCCGAGAGATTCGGCTACTTGGAGGCATGAACCATGAGAACGTTT
TGAGCATCGTCGACATTGATGAGCCGGAGCACTATGAAAGTTTTGCAGAT
GTCTACATCGTTACCGAGCTTATGGACACGGACCTGCATAAGTTGCTTCA
ATCTTCCCATCCTTTGGTGGAATCTCAGAGGAAGTATTTCGCATACCAAA
TGCTTCGGGCGTTGCGATACATTCATAGGTAAGGTATTCATATTCAGAGC
ACGGAGGCGAGCCGGATGGGGGCGCAGCTACTTCTAGAAAGCGAACCTCT
AACTAATATCTCTCCTTTCCCTCATGACTACCTTCCAATGTTAAAGTGCA
AGTGTTCTGCACCGGGACCTAAAACCAGCGAACGTATTGGTCTCAGAAAC
AGTAAGTTACAAGGTACCTATTGCCTATCCACTAGCGAGAACGGCGGCTC
GTTATGGAGTTGAACAAAGATTTCTCAGTGTTTCGCGGATGATCTTAATC
GAGAACTCCTAACCTGTCGATTTCTACTCCTTTTGTTGAATATCTTTCGT
CATGAACCAGTGTGATATCAAAATATGTGACTTTGGACTTGCTAGGTATC
TTGATCCTGCTGACGCAGCTGCTCACGGAATGACTGAATATGTCGTTACC
AGATGGTACCGAGCTCCTGAGTTGCTTCTCGCATGCGACGAATACGATGC
CGCAATCGACATGTGGAGCGTTGGCTGTGTAATAGCTGAGCTCTACTCAA
GGAAACCGATATTCCCAGGGCGCGATGTTAAGAATCAGATAGAGATTATT
TGCTCCGTTGTCGGGAAGCCTCAAGGACACGAAATCCAATTCATTAAGAA
CTACAACGCCAAAGACTTTCTCACACGTTTGGCTCCGAGCAATCGTCAAG
ACTTTCGAAGGCTGGTTCCTGGAGCCGGTCCAGCTGCGATAGACCTTGTG
GACAGGCTGTTGCAGTTTGATCCCAGGAAACGGCTATCCGCAGAAGAGGC
ATTGAATCATCCATATGTCCGGGACTATAGAGACGTGGCTTCGGAGAAAG
TCGCAGTTCATTTAAACTACAACACTTTGGAGCCTCCCAACGAACAGAAG
CTCGGAAGGGATGGAATCCGCAGGCTTATGTGGAATGAGATTCTCAAATT
TCACCCACAAGCACGGTTTCGCGAGCCTCAAAGCGCCAAAGATGCAGAAC
TGAAAGTGAACTATATGACATCGCTCTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:169215..170793+

>Ggra3940.t1 ID=Ggra3940.t1|Name=Ggra3940.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000908_pilon:169215..170793+ (Gracilaria gracilis GNS1m male)
ATGAAGAACAAGAACATAAAGCAATGGGTAGTTAACAAGAGGAAAAGCAT
CACTGATATATTCGTCAACGGTCGCCCAAACATCGAAGAAGATTCTCCAT
CCGCCATGGACATGGACAGTCCATCTCCGGAATCGGCGTTTTCTTCGCAA
CATCCCCCGCCAATACCTAACAAGACAGTGTTCTTTGCGAAGGGGAACCC
TTTCCGCGTCGACCCCAGATACTCCTACATTCGCACCCTTGGCCATGGAG
CATATGGTGTGGTCTGTGCAGCAAATGACTCTGTTCAGCAACGAAAAGTC
GCTGTCAAGAAGATTGCTGGCGTCTTTGAAGACCTTACAGATGCCAAACG
CATTATCCGAGAGATTCGGCTACTTGGAGGCATGAACCATGAGAACGTTT
TGAGCATCGTCGACATTGATGAGCCGGAGCACTATGAAAGTTTTGCAGAT
GTCTACATCGTTACCGAGCTTATGGACACGGACCTGCATAAGTTGCTTCA
ATCTTCCCATCCTTTGGTGGAATCTCAGAGGAAGTATTTCGCATACCAAA
TGCTTCGGGCGTTGCGATACATTCATAGTGCAAGTGTTCTGCACCGGGAC
CTAAAACCAGCGAACGTATTGGTCTCAGAAACATGTGATATCAAAATATG
TGACTTTGGACTTGCTAGGTATCTTGATCCTGCTGACGCAGCTGCTCACG
GAATGACTGAATATGTCGTTACCAGATGGTACCGAGCTCCTGAGTTGCTT
CTCGCATGCGACGAATACGATGCCGCAATCGACATGTGGAGCGTTGGCTG
TGTAATAGCTGAGCTCTACTCAAGGAAACCGATATTCCCAGGGCGCGATG
TTAAGAATCAGATAGAGATTATTTGCTCCGTTGTCGGGAAGCCTCAAGGA
CACGAAATCCAATTCATTAAGAACTACAACGCCAAAGACTTTCTCACACG
TTTGGCTCCGAGCAATCGTCAAGACTTTCGAAGGCTGGTTCCTGGAGCCG
GTCCAGCTGCGATAGACCTTGTGGACAGGCTGTTGCAGTTTGATCCCAGG
AAACGGCTATCCGCAGAAGAGGCATTGAATCATCCATATGTCCGGGACTA
TAGAGACGTGGCTTCGGAGAAAGTCGCAGTTCATTTAAACTACAACACTT
TGGAGCCTCCCAACGAACAGAAGCTCGGAAGGGATGGAATCCGCAGGCTT
ATGTGGAATGAGATTCTCAAATTTCACCCACAAGCACGGTTTCGCGAGCC
TCAAAGCGCCAAAGATGCAGAACTGAAAGTGAACTATATGACATCGCTCT
AG
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