Ggra3935.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3935.t1
Unique NameGgra3935.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length539
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:157458..159457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_4620
PFAMsAmino_oxidase
Max annot lvl1117|Cyanobacteria
Evalue1.68e-204
EggNOG OGsCOG1233@1|root,COG3349@1|root,COG1233@2|Bacteria,COG3349@2|Bacteria,1G04N@1117|Cyanobacteria,1H8ST@1150|Oscillatoriales
DescriptionPFAM Flavin containing amine oxidoreductase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3935Ggra3935Gracilaria gracilis GNS1m malegenetig00000908_pilon 157458..159457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3935.t1Ggra3935.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 157458..159457 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3935.t1.stop1Ggra3935.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 157458..157460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3935.t1.CDS1Ggra3935.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 157458..157683 -
Ggra3935.t1.CDS2Ggra3935.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 157766..157769 -
Ggra3935.t1.CDS3Ggra3935.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000908_pilon 157954..158025 -
Ggra3935.t1.CDS4Ggra3935.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000908_pilon 158143..159457 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3935.t1.exon1Ggra3935.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 157458..157683 -
Ggra3935.t1.exon2Ggra3935.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 157766..157769 -
Ggra3935.t1.exon3Ggra3935.t1.exon3Gracilaria gracilis GNS1m maleexontig00000908_pilon 157954..158025 -
Ggra3935.t1.exon4Ggra3935.t1.exon4Gracilaria gracilis GNS1m maleexontig00000908_pilon 158143..159457 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3935.t1.intron1Ggra3935.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 157684..157765 -
Ggra3935.t1.intron2Ggra3935.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000908_pilon 157770..157953 -
Ggra3935.t1.intron3Ggra3935.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000908_pilon 158026..158142 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3935.t1.start1Ggra3935.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 159455..159457 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3935.t1 ID=Ggra3935.t1|Name=Ggra3935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=539bp
MPSASGSFCRLSTKNVGERQAKWRMEFEGTSPNRIAVIGAGWAGLGAAHH
LVQQPNTEVTLIDAAPSVGGLVAGWKTKNGQDVEVGIHGMWRPYFNLFHL
VERELKLDPFTDWTRSSQRSPKGKVVESPIFNDLPRLPSPMGTFVYTKFL
DLPLVDRLSALPLLEAVIQWDNSDEVWRKFDKMTAKELFKLYGCTERVYK
EAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVVWPRGTVGTM
IFAPLVDRIRSFGGQVQTSTRLKDVEINRNRVTKIVTTSRDGSENTMDVD
AVVFSVGISGLQGILRNSKTLASRKEFRNTNNLSSIDVMAVRLYFDRKFR
IEFDSNACFGFEETTGWTYFNLNAIHDEFKDAEKTVIEADFYHSNQLMPM
DDGEIAEEVRRRLCVAESTFKGAEIEDYVVVRVPRGVTHFRPGSYQDFMN
VRTSIENVFMSGDWIRTSHGSFSQEKALVTGYEAANASLDYFGYGKSAQK
RIIPVEEDEPHIVVARRVYKALEGLRRQVNPFSDLFIV*
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spliced messenger RNA

>Ggra3935.t1 ID=Ggra3935.t1|Name=Ggra3935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00000908_pilon:157458..159457- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCTGCATCGGGGAGTTTTTGTCGTCTAAGCACCAAGAATGTCGG
GGAACGTCAAGCAAAATGGAGGATGGAATTTGAGGGCACGAGTCCAAACC
GAATCGCCGTGATTGGAGCCGGTTGGGCAGGTTTAGGTGCCGCACATCAC
CTAGTTCAACAGCCCAACACTGAGGTAACTCTCATTGATGCTGCTCCATC
AGTAGGAGGATTAGTTGCTGGATGGAAGACAAAAAACGGCCAAGATGTAG
AGGTGGGGATTCACGGAATGTGGCGACCATACTTCAACCTCTTTCATTTG
GTTGAGCGCGAATTAAAATTGGATCCGTTCACCGATTGGACCAGGTCATC
ACAAAGGTCTCCGAAAGGAAAAGTTGTCGAAAGTCCTATCTTCAATGATT
TACCAAGACTACCGTCCCCAATGGGTACTTTTGTGTATACAAAGTTCTTA
GACTTACCACTGGTCGACAGGCTTTCTGCACTCCCTTTGCTTGAAGCCGT
CATTCAATGGGATAACTCTGATGAGGTCTGGCGTAAATTTGATAAAATGA
CAGCGAAAGAGCTGTTTAAGTTGTACGGTTGCACCGAACGTGTTTACAAG
GAAGCATTTGAACCAATGCTCCTGGTAGGGCTGTTTGCCCCGGGTGAGCA
ATGCAGCGCAGCAGGAGCACTGGGTATGCTATACTTTTTCATCTTGGCTC
ATCAGGCTGACTTTGACGTAGTCTGGCCTCGCGGTACAGTTGGAACGATG
ATATTTGCCCCACTTGTCGATCGCATAAGGTCTTTTGGGGGACAGGTCCA
AACATCGACAAGGCTGAAGGACGTCGAAATCAACAGAAACAGAGTCACCA
AAATCGTTACTACTTCGAGAGACGGAAGTGAGAATACCATGGACGTTGAC
GCTGTCGTGTTTTCAGTCGGAATCAGTGGTTTGCAAGGCATTCTCCGGAA
CAGCAAGACACTTGCATCTCGCAAAGAGTTTCGAAACACGAATAATTTGT
CCAGTATCGACGTCATGGCTGTTCGTTTATACTTTGACAGAAAATTCCGT
ATCGAGTTCGACTCTAACGCCTGTTTTGGTTTCGAGGAGACGACAGGGTG
GACATACTTCAATCTCAATGCTATTCACGATGAGTTTAAGGATGCAGAGA
AAACTGTCATAGAGGCTGATTTTTATCACAGCAATCAACTCATGCCCATG
GATGATGGTGAAATTGCTGAAGAAGTCCGGAGGCGACTCTGTGTGGCTGA
AAGCACATTCAAGGGCGCAGAAATCGAAGATTACGTCGTAGTTCGAGTTC
CTCGAGGTGTTACACACTTTCGACCTGGGTCGTATCAAGATTTTATGAAT
GTAAGAACCTCGATTGAGAACGTGTTCATGTCTGGCGATTGGATTCGCAC
CTCGCACGGGAGTTTCAGCCAGGAAAAAGCTCTTGTAACAGGCTACGAAG
CAGCGAACGCAAGCCTGGATTATTTTGGATACGGAAAGTCAGCCCAAAAG
AGGATTATTCCCGTCGAGGAAGACGAACCTCATATAGTCGTCGCCAGACG
TGTCTACAAAGCTCTAGAAGGATTACGCCGACAAGTCAATCCGTTTTCGG
ATTTGTTCATCGTTTAG
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protein sequence of Ggra3935.t1

>Ggra3935.t1 ID=Ggra3935.t1|Name=Ggra3935.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=539bp
MPSASGSFCRLSTKNVGERQAKWRMEFEGTSPNRIAVIGAGWAGLGAAHH
LVQQPNTEVTLIDAAPSVGGLVAGWKTKNGQDVEVGIHGMWRPYFNLFHL
VERELKLDPFTDWTRSSQRSPKGKVVESPIFNDLPRLPSPMGTFVYTKFL
DLPLVDRLSALPLLEAVIQWDNSDEVWRKFDKMTAKELFKLYGCTERVYK
EAFEPMLLVGLFAPGEQCSAAGALGMLYFFILAHQADFDVVWPRGTVGTM
IFAPLVDRIRSFGGQVQTSTRLKDVEINRNRVTKIVTTSRDGSENTMDVD
AVVFSVGISGLQGILRNSKTLASRKEFRNTNNLSSIDVMAVRLYFDRKFR
IEFDSNACFGFEETTGWTYFNLNAIHDEFKDAEKTVIEADFYHSNQLMPM
DDGEIAEEVRRRLCVAESTFKGAEIEDYVVVRVPRGVTHFRPGSYQDFMN
VRTSIENVFMSGDWIRTSHGSFSQEKALVTGYEAANASLDYFGYGKSAQK
RIIPVEEDEPHIVVARRVYKALEGLRRQVNPFSDLFIV*
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mRNA from alignment at tig00000908_pilon:157458..159457-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3935.t1 ID=Ggra3935.t1|Name=Ggra3935.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2000bp|location=Sequence derived from alignment at tig00000908_pilon:157458..159457- (Gracilaria gracilis GNS1m male)
ATGCCATCTGCATCGGGGAGTTTTTGTCGTCTAAGCACCAAGAATGTCGG
GGAACGTCAAGCAAAATGGAGGATGGAATTTGAGGGCACGAGTCCAAACC
GAATCGCCGTGATTGGAGCCGGTTGGGCAGGTTTAGGTGCCGCACATCAC
CTAGTTCAACAGCCCAACACTGAGGTAACTCTCATTGATGCTGCTCCATC
AGTAGGAGGATTAGTTGCTGGATGGAAGACAAAAAACGGCCAAGATGTAG
AGGTGGGGATTCACGGAATGTGGCGACCATACTTCAACCTCTTTCATTTG
GTTGAGCGCGAATTAAAATTGGATCCGTTCACCGATTGGACCAGGTCATC
ACAAAGGTCTCCGAAAGGAAAAGTTGTCGAAAGTCCTATCTTCAATGATT
TACCAAGACTACCGTCCCCAATGGGTACTTTTGTGTATACAAAGTTCTTA
GACTTACCACTGGTCGACAGGCTTTCTGCACTCCCTTTGCTTGAAGCCGT
CATTCAATGGGATAACTCTGATGAGGTCTGGCGTAAATTTGATAAAATGA
CAGCGAAAGAGCTGTTTAAGTTGTACGGTTGCACCGAACGTGTTTACAAG
GAAGCATTTGAACCAATGCTCCTGGTAGGGCTGTTTGCCCCGGGTGAGCA
ATGCAGCGCAGCAGGAGCACTGGGTATGCTATACTTTTTCATCTTGGCTC
ATCAGGCTGACTTTGACGTAGTCTGGCCTCGCGGTACAGTTGGAACGATG
ATATTTGCCCCACTTGTCGATCGCATAAGGTCTTTTGGGGGACAGGTCCA
AACATCGACAAGGCTGAAGGACGTCGAAATCAACAGAAACAGAGTCACCA
AAATCGTTACTACTTCGAGAGACGGAAGTGAGAATACCATGGACGTTGAC
GCTGTCGTGTTTTCAGTCGGAATCAGTGGTTTGCAAGGCATTCTCCGGAA
CAGCAAGACACTTGCATCTCGCAAAGAGTTTCGAAACACGAATAATTTGT
CCAGTATCGACGTCATGGCTGTTCGTTTATACTTTGACAGAAAATTCCGT
ATCGAGTTCGACTCTAACGCCTGTTTTGGTTTCGAGGAGACGACAGGGTG
GACATACTTCAATCTCAATGCTATTCACGATGAGTTTAAGGATGCAGAGA
AAACTGTCATAGAGGCTGATTTTTATCACAGCAATCAACTCATGCCCATG
GATGATGGTGAAATTGCTGAAGAAGTCCGGAGGCGACTCTGTGTGGCTGA
AAGCACATTCAAGGGCGCAGAAATCGAAGATTACGTCGTAGTTCGAGTTC
CTCGAGGTGTTACACGTACGTCATTTCGTTCACATTTTGAAACGAACCAT
TCATAGGGGGACTATCACTGCGTCTGTGATTCGACTAACAGCTGACGACA
ATTGTGTCTATGAAACAATATTGTATTGACAGACTTTCGACCTGGGTCGT
ATCAAGATTTTATGAATGTAAGAACCTCGATTGAGAACGTGTTCATGTCT
GGCGGTAAGTGTAGAACCCTATACAGACTTGGACAAACGTGATTGGCTTT
ATTGCTATTGACTAAGAATGATTCTAACTATATCTTTCACTTCAACCCAA
ACGGGGTCTCGCTCAATGCATATCTAATGAACGTGTCGTTTGCACATCGA
AACGATTCCATTTGCTGCACGGTATCTTTCAATGTCAGATTGGTACGTGG
TATATCCTGCTTAGCTGCGGAAGAAATCACTCAGTTACTAACGTCACATT
TCGGCATAATTCTATTACAAACAGGATTCGCACCTCGCACGGGAGTTTCA
GCCAGGAAAAAGCTCTTGTAACAGGCTACGAAGCAGCGAACGCAAGCCTG
GATTATTTTGGATACGGAAAGTCAGCCCAAAAGAGGATTATTCCCGTCGA
GGAAGACGAACCTCATATAGTCGTCGCCAGACGTGTCTACAAAGCTCTAG
AAGGATTACGCCGACAAGTCAATCCGTTTTCGGATTTGTTCATCGTTTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:157458..159457-

>Ggra3935.t1 ID=Ggra3935.t1|Name=Ggra3935.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1617bp|location=Sequence derived from alignment at tig00000908_pilon:157458..159457- (Gracilaria gracilis GNS1m male)
ATGCCATCTGCATCGGGGAGTTTTTGTCGTCTAAGCACCAAGAATGTCGG
GGAACGTCAAGCAAAATGGAGGATGGAATTTGAGGGCACGAGTCCAAACC
GAATCGCCGTGATTGGAGCCGGTTGGGCAGGTTTAGGTGCCGCACATCAC
CTAGTTCAACAGCCCAACACTGAGGTAACTCTCATTGATGCTGCTCCATC
AGTAGGAGGATTAGTTGCTGGATGGAAGACAAAAAACGGCCAAGATGTAG
AGGTGGGGATTCACGGAATGTGGCGACCATACTTCAACCTCTTTCATTTG
GTTGAGCGCGAATTAAAATTGGATCCGTTCACCGATTGGACCAGGTCATC
ACAAAGGTCTCCGAAAGGAAAAGTTGTCGAAAGTCCTATCTTCAATGATT
TACCAAGACTACCGTCCCCAATGGGTACTTTTGTGTATACAAAGTTCTTA
GACTTACCACTGGTCGACAGGCTTTCTGCACTCCCTTTGCTTGAAGCCGT
CATTCAATGGGATAACTCTGATGAGGTCTGGCGTAAATTTGATAAAATGA
CAGCGAAAGAGCTGTTTAAGTTGTACGGTTGCACCGAACGTGTTTACAAG
GAAGCATTTGAACCAATGCTCCTGGTAGGGCTGTTTGCCCCGGGTGAGCA
ATGCAGCGCAGCAGGAGCACTGGGTATGCTATACTTTTTCATCTTGGCTC
ATCAGGCTGACTTTGACGTAGTCTGGCCTCGCGGTACAGTTGGAACGATG
ATATTTGCCCCACTTGTCGATCGCATAAGGTCTTTTGGGGGACAGGTCCA
AACATCGACAAGGCTGAAGGACGTCGAAATCAACAGAAACAGAGTCACCA
AAATCGTTACTACTTCGAGAGACGGAAGTGAGAATACCATGGACGTTGAC
GCTGTCGTGTTTTCAGTCGGAATCAGTGGTTTGCAAGGCATTCTCCGGAA
CAGCAAGACACTTGCATCTCGCAAAGAGTTTCGAAACACGAATAATTTGT
CCAGTATCGACGTCATGGCTGTTCGTTTATACTTTGACAGAAAATTCCGT
ATCGAGTTCGACTCTAACGCCTGTTTTGGTTTCGAGGAGACGACAGGGTG
GACATACTTCAATCTCAATGCTATTCACGATGAGTTTAAGGATGCAGAGA
AAACTGTCATAGAGGCTGATTTTTATCACAGCAATCAACTCATGCCCATG
GATGATGGTGAAATTGCTGAAGAAGTCCGGAGGCGACTCTGTGTGGCTGA
AAGCACATTCAAGGGCGCAGAAATCGAAGATTACGTCGTAGTTCGAGTTC
CTCGAGGTGTTACACACTTTCGACCTGGGTCGTATCAAGATTTTATGAAT
GTAAGAACCTCGATTGAGAACGTGTTCATGTCTGGCGATTGGATTCGCAC
CTCGCACGGGAGTTTCAGCCAGGAAAAAGCTCTTGTAACAGGCTACGAAG
CAGCGAACGCAAGCCTGGATTATTTTGGATACGGAAAGTCAGCCCAAAAG
AGGATTATTCCCGTCGAGGAAGACGAACCTCATATAGTCGTCGCCAGACG
TGTCTACAAAGCTCTAGAAGGATTACGCCGACAAGTCAATCCGTTTTCGG
ATTTGTTCATCGTTTAG
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