Ggra3918.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3918.t1
Unique NameGgra3918.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:85710..86993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR015333-PA
Preferred nameORC5
PFAMsAAA_16,ORC5_C
Max annot lvl33208|Metazoa
KEGG koko:K02607
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0000070,GO:0000082,GO:0000166,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000808,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005664,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006323,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007076,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0022402,GO:0030261,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0036094,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0046483,GO:0048285,GO:0051276,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140014,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1902850,GO:1903047,GO:1990837
Evalue2.34e-24
EggNOG OGsKOG2543@1|root,KOG2543@2759|Eukaryota,38C97@33154|Opisthokonta,3BAZN@33208|Metazoa,3CRQ6@33213|Bilateria,41XVC@6656|Arthropoda
DescriptionOrigin recognition complex subunit
COG categoryL
BRITEko00000,ko00001,ko00002,ko01009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3918Ggra3918Gracilaria gracilis GNS1m malegenetig00000908_pilon 85710..86993 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3918.t1.stop1Ggra3918.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 85710..85712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3918.t1.CDS1Ggra3918.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 85710..86993 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3918.t1.exon1Ggra3918.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 85710..86993 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3918.t1.start1Ggra3918.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 86991..86993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3918.t1Ggra3918.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 85710..86993 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3918.t1 ID=Ggra3918.t1|Name=Ggra3918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MDNSSVGRRSRLQNLQSNLSSPQPRTIFVHGSSTASNFDSINSTLPEACH
TQHIDCVLNHTDRHLYSAILGERVPADPSILISRLNRSHDNSVVYIFSRA
ERLISSSFSPSALHTIVSMPSLTTNLKLRVILISRLSWSSFRFHLNHSVP
DPLEIFLPPPKEDEAVENLCNVMDYDETTDPKLAEKLYPGYAKAVVSVMY
KTTTDIHELSVVCNKLFPDYMKAVREKNPAAAFNQIQNRLAIALQSLYRR
RLTSHDLEPDGTSNEPPETALHVLDKPEQCEGYESSLSMATRTVLIAAFL
ASRNPPQQDSRFFSSGRTGRRRSSKAKRPEQQDRAFVLERLLAIAASIAP
DSFPRKRGTDTNESVTAFVSTSLLVQVSTLVTLGLLSSEAGGDILTEPKY
RCNITKDTAFRIADSLNIMLDQYLYVE*
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spliced messenger RNA

>Ggra3918.t1 ID=Ggra3918.t1|Name=Ggra3918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000908_pilon:85710..86993- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAATTCCTCCGTCGGGCGAAGATCACGGCTACAAAACCTGCAGTC
AAATCTAAGCTCTCCCCAGCCTCGCACAATCTTTGTACATGGTTCTTCCA
CCGCCTCTAACTTCGACTCCATCAATAGCACTTTACCCGAAGCCTGCCAC
ACGCAACACATCGACTGTGTTCTAAACCACACAGACCGTCATCTATACTC
AGCAATTCTAGGAGAACGTGTTCCTGCTGATCCTTCAATTCTAATATCTC
GACTGAACAGAAGTCATGATAATTCAGTTGTGTACATTTTTTCCCGCGCC
GAAAGACTCATTTCTTCTTCATTTTCGCCTTCAGCTCTTCATACAATTGT
TTCAATGCCGTCTTTGACAACAAATTTGAAGCTCAGAGTAATTCTAATAA
GTCGTTTGTCATGGAGTTCTTTCCGCTTCCACTTGAATCATTCCGTACCC
GATCCTCTTGAGATCTTTCTACCGCCACCAAAGGAAGACGAAGCAGTTGA
AAACTTGTGTAATGTGATGGACTACGACGAAACAACGGATCCCAAATTGG
CCGAAAAGCTTTATCCTGGCTACGCTAAGGCTGTCGTAAGCGTAATGTAC
AAGACGACCACCGACATACATGAACTATCTGTTGTATGTAACAAGCTCTT
TCCTGACTATATGAAAGCGGTACGAGAAAAGAATCCCGCAGCAGCCTTCA
ATCAAATCCAAAATCGATTGGCTATCGCATTGCAGTCTTTGTATCGGCGT
AGATTAACGTCACACGACTTGGAACCAGACGGAACAAGCAACGAGCCCCC
AGAAACAGCCCTTCACGTTCTGGACAAACCTGAGCAATGTGAAGGGTACG
AATCCTCGCTCTCAATGGCGACCCGCACAGTTCTCATTGCTGCATTTCTC
GCTTCGCGAAATCCGCCGCAACAAGATTCACGATTCTTTTCATCCGGGAG
AACTGGGCGACGCAGATCCTCCAAGGCAAAGAGACCAGAACAGCAAGATC
GTGCGTTTGTCCTTGAACGACTGCTAGCAATCGCTGCGTCTATAGCTCCC
GATTCCTTTCCTCGGAAGCGAGGGACGGATACAAACGAAAGCGTGACAGC
CTTCGTTTCCACGAGCTTACTTGTGCAGGTTTCAACTCTAGTTACGTTGG
GCTTGCTCTCGAGCGAAGCAGGAGGGGATATTCTGACGGAGCCAAAGTAC
CGGTGCAATATCACGAAAGATACTGCGTTTCGAATAGCAGATTCTCTCAA
CATCATGCTTGATCAGTATTTGTATGTGGAATGA
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protein sequence of Ggra3918.t1

>Ggra3918.t1 ID=Ggra3918.t1|Name=Ggra3918.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MDNSSVGRRSRLQNLQSNLSSPQPRTIFVHGSSTASNFDSINSTLPEACH
TQHIDCVLNHTDRHLYSAILGERVPADPSILISRLNRSHDNSVVYIFSRA
ERLISSSFSPSALHTIVSMPSLTTNLKLRVILISRLSWSSFRFHLNHSVP
DPLEIFLPPPKEDEAVENLCNVMDYDETTDPKLAEKLYPGYAKAVVSVMY
KTTTDIHELSVVCNKLFPDYMKAVREKNPAAAFNQIQNRLAIALQSLYRR
RLTSHDLEPDGTSNEPPETALHVLDKPEQCEGYESSLSMATRTVLIAAFL
ASRNPPQQDSRFFSSGRTGRRRSSKAKRPEQQDRAFVLERLLAIAASIAP
DSFPRKRGTDTNESVTAFVSTSLLVQVSTLVTLGLLSSEAGGDILTEPKY
RCNITKDTAFRIADSLNIMLDQYLYVE*
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mRNA from alignment at tig00000908_pilon:85710..86993-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3918.t1 ID=Ggra3918.t1|Name=Ggra3918.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000908_pilon:85710..86993- (Gracilaria gracilis GNS1m male)
ATGGATAATTCCTCCGTCGGGCGAAGATCACGGCTACAAAACCTGCAGTC
AAATCTAAGCTCTCCCCAGCCTCGCACAATCTTTGTACATGGTTCTTCCA
CCGCCTCTAACTTCGACTCCATCAATAGCACTTTACCCGAAGCCTGCCAC
ACGCAACACATCGACTGTGTTCTAAACCACACAGACCGTCATCTATACTC
AGCAATTCTAGGAGAACGTGTTCCTGCTGATCCTTCAATTCTAATATCTC
GACTGAACAGAAGTCATGATAATTCAGTTGTGTACATTTTTTCCCGCGCC
GAAAGACTCATTTCTTCTTCATTTTCGCCTTCAGCTCTTCATACAATTGT
TTCAATGCCGTCTTTGACAACAAATTTGAAGCTCAGAGTAATTCTAATAA
GTCGTTTGTCATGGAGTTCTTTCCGCTTCCACTTGAATCATTCCGTACCC
GATCCTCTTGAGATCTTTCTACCGCCACCAAAGGAAGACGAAGCAGTTGA
AAACTTGTGTAATGTGATGGACTACGACGAAACAACGGATCCCAAATTGG
CCGAAAAGCTTTATCCTGGCTACGCTAAGGCTGTCGTAAGCGTAATGTAC
AAGACGACCACCGACATACATGAACTATCTGTTGTATGTAACAAGCTCTT
TCCTGACTATATGAAAGCGGTACGAGAAAAGAATCCCGCAGCAGCCTTCA
ATCAAATCCAAAATCGATTGGCTATCGCATTGCAGTCTTTGTATCGGCGT
AGATTAACGTCACACGACTTGGAACCAGACGGAACAAGCAACGAGCCCCC
AGAAACAGCCCTTCACGTTCTGGACAAACCTGAGCAATGTGAAGGGTACG
AATCCTCGCTCTCAATGGCGACCCGCACAGTTCTCATTGCTGCATTTCTC
GCTTCGCGAAATCCGCCGCAACAAGATTCACGATTCTTTTCATCCGGGAG
AACTGGGCGACGCAGATCCTCCAAGGCAAAGAGACCAGAACAGCAAGATC
GTGCGTTTGTCCTTGAACGACTGCTAGCAATCGCTGCGTCTATAGCTCCC
GATTCCTTTCCTCGGAAGCGAGGGACGGATACAAACGAAAGCGTGACAGC
CTTCGTTTCCACGAGCTTACTTGTGCAGGTTTCAACTCTAGTTACGTTGG
GCTTGCTCTCGAGCGAAGCAGGAGGGGATATTCTGACGGAGCCAAAGTAC
CGGTGCAATATCACGAAAGATACTGCGTTTCGAATAGCAGATTCTCTCAA
CATCATGCTTGATCAGTATTTGTATGTGGAATGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:85710..86993-

>Ggra3918.t1 ID=Ggra3918.t1|Name=Ggra3918.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000908_pilon:85710..86993- (Gracilaria gracilis GNS1m male)
ATGGATAATTCCTCCGTCGGGCGAAGATCACGGCTACAAAACCTGCAGTC
AAATCTAAGCTCTCCCCAGCCTCGCACAATCTTTGTACATGGTTCTTCCA
CCGCCTCTAACTTCGACTCCATCAATAGCACTTTACCCGAAGCCTGCCAC
ACGCAACACATCGACTGTGTTCTAAACCACACAGACCGTCATCTATACTC
AGCAATTCTAGGAGAACGTGTTCCTGCTGATCCTTCAATTCTAATATCTC
GACTGAACAGAAGTCATGATAATTCAGTTGTGTACATTTTTTCCCGCGCC
GAAAGACTCATTTCTTCTTCATTTTCGCCTTCAGCTCTTCATACAATTGT
TTCAATGCCGTCTTTGACAACAAATTTGAAGCTCAGAGTAATTCTAATAA
GTCGTTTGTCATGGAGTTCTTTCCGCTTCCACTTGAATCATTCCGTACCC
GATCCTCTTGAGATCTTTCTACCGCCACCAAAGGAAGACGAAGCAGTTGA
AAACTTGTGTAATGTGATGGACTACGACGAAACAACGGATCCCAAATTGG
CCGAAAAGCTTTATCCTGGCTACGCTAAGGCTGTCGTAAGCGTAATGTAC
AAGACGACCACCGACATACATGAACTATCTGTTGTATGTAACAAGCTCTT
TCCTGACTATATGAAAGCGGTACGAGAAAAGAATCCCGCAGCAGCCTTCA
ATCAAATCCAAAATCGATTGGCTATCGCATTGCAGTCTTTGTATCGGCGT
AGATTAACGTCACACGACTTGGAACCAGACGGAACAAGCAACGAGCCCCC
AGAAACAGCCCTTCACGTTCTGGACAAACCTGAGCAATGTGAAGGGTACG
AATCCTCGCTCTCAATGGCGACCCGCACAGTTCTCATTGCTGCATTTCTC
GCTTCGCGAAATCCGCCGCAACAAGATTCACGATTCTTTTCATCCGGGAG
AACTGGGCGACGCAGATCCTCCAAGGCAAAGAGACCAGAACAGCAAGATC
GTGCGTTTGTCCTTGAACGACTGCTAGCAATCGCTGCGTCTATAGCTCCC
GATTCCTTTCCTCGGAAGCGAGGGACGGATACAAACGAAAGCGTGACAGC
CTTCGTTTCCACGAGCTTACTTGTGCAGGTTTCAACTCTAGTTACGTTGG
GCTTGCTCTCGAGCGAAGCAGGAGGGGATATTCTGACGGAGCCAAAGTAC
CGGTGCAATATCACGAAAGATACTGCGTTTCGAATAGCAGATTCTCTCAA
CATCATGCTTGATCAGTATTTGTATGTGGAATGA
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