Ggra3914.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3914.t1
Unique NameGgra3914.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:81306..82424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN264CT
PFAMsAIRS,AIRS_C
Max annot lvl2759|Eukaryota
KEGG rclassRC01100
KEGG koko:K01933
KEGG ReactionR04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Evalue2.03e-139
EggNOG OGsCOG0151@1|root,KOG0237@2759|Eukaryota
EC6.3.3.1
Descriptionphosphoribosylamine-glycine ligase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3914Ggra3914Gracilaria gracilis GNS1m malegenetig00000908_pilon 81306..82424 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3914.t1.stop1Ggra3914.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 81306..81308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3914.t1.CDS1Ggra3914.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 81306..82424 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3914.t1.exon1Ggra3914.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 81306..82424 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3914.t1.start1Ggra3914.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 82422..82424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3914.t1Ggra3914.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 81306..82424 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3914.t1 ID=Ggra3914.t1|Name=Ggra3914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=373bp
MSTNESLTYASSGVNIETESDSIKSLISALGPIAHRKPGSPGAPVAHSGG
FSGLIEFGDNLLALCTDGVGSKLLLAAEMGVYDTVAIDCMAMNVNDLLCI
GAEPLAFVDYIAAPQPNKETWAALGRGLGEACRRARVSLCGGETASLPDM
VREIDVSGTALGWLPKGKQLEGKVKSGDKIIGLPSSGIHSNGYSLVRKIL
TKSGASITDIAPFETGTRSDGLWRHRDGDVTLGEVLLNPTKIYVDPVSDL
LEACRKGEGPCKYDDIHGIAHITGGGLSNLLRLGSDIGFVIDNALPILPE
FKWLQETGEISGFEMWRTFNMGMGMAVIVSKESCATVSSWLQERLNGSKP
VGYVDSERRVLQATNGVVFEKY*
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spliced messenger RNA

>Ggra3914.t1 ID=Ggra3914.t1|Name=Ggra3914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000908_pilon:81306..82424- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACAAATGAATCCTTAACATATGCATCTTCAGGAGTTAATATCGA
GACCGAATCTGACAGTATTAAGTCTTTGATCTCAGCGCTTGGTCCAATAG
CGCACCGCAAGCCGGGCAGTCCTGGTGCCCCTGTTGCTCACTCTGGCGGC
TTTTCTGGCCTAATTGAATTTGGTGACAATCTGCTCGCGCTCTGTACGGA
TGGAGTGGGAAGCAAACTCTTACTCGCAGCTGAGATGGGTGTGTACGACA
CAGTTGCTATTGATTGCATGGCGATGAATGTCAATGATTTGCTATGTATA
GGTGCAGAACCATTGGCATTTGTAGACTATATTGCTGCACCTCAGCCAAA
CAAGGAAACGTGGGCTGCTCTAGGTCGCGGTTTGGGCGAAGCCTGTCGGC
GAGCGCGTGTGAGTCTCTGTGGCGGAGAGACAGCCAGTTTGCCTGACATG
GTTCGTGAAATAGACGTTAGTGGGACTGCGTTAGGCTGGCTACCGAAAGG
GAAACAGTTGGAAGGAAAAGTAAAGAGCGGCGATAAAATCATTGGACTCC
CGTCTTCTGGTATACATTCTAACGGATATTCGCTCGTAAGAAAGATCTTG
ACAAAGAGTGGTGCATCAATTACAGATATCGCTCCATTTGAAACTGGGAC
ACGAAGTGATGGGCTGTGGCGTCATCGTGACGGAGATGTGACTCTTGGGG
AAGTACTCTTAAACCCAACCAAAATCTACGTTGATCCAGTATCGGATCTA
CTTGAGGCGTGTCGGAAAGGCGAAGGACCCTGTAAGTATGATGATATTCA
CGGCATTGCTCATATTACCGGTGGTGGCCTATCTAATCTACTTCGTTTGG
GGTCCGACATTGGATTCGTCATCGACAACGCATTACCGATCTTACCAGAG
TTCAAATGGCTGCAGGAAACCGGTGAGATTTCAGGCTTTGAGATGTGGCG
CACGTTCAATATGGGCATGGGAATGGCTGTGATCGTATCAAAAGAATCGT
GCGCTACAGTTTCGAGCTGGCTTCAAGAGCGGCTAAATGGTTCGAAGCCT
GTTGGCTACGTAGATTCTGAGCGAAGAGTGCTTCAAGCTACGAATGGTGT
TGTTTTCGAAAAGTATTAG
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protein sequence of Ggra3914.t1

>Ggra3914.t1 ID=Ggra3914.t1|Name=Ggra3914.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=373bp
MSTNESLTYASSGVNIETESDSIKSLISALGPIAHRKPGSPGAPVAHSGG
FSGLIEFGDNLLALCTDGVGSKLLLAAEMGVYDTVAIDCMAMNVNDLLCI
GAEPLAFVDYIAAPQPNKETWAALGRGLGEACRRARVSLCGGETASLPDM
VREIDVSGTALGWLPKGKQLEGKVKSGDKIIGLPSSGIHSNGYSLVRKIL
TKSGASITDIAPFETGTRSDGLWRHRDGDVTLGEVLLNPTKIYVDPVSDL
LEACRKGEGPCKYDDIHGIAHITGGGLSNLLRLGSDIGFVIDNALPILPE
FKWLQETGEISGFEMWRTFNMGMGMAVIVSKESCATVSSWLQERLNGSKP
VGYVDSERRVLQATNGVVFEKY*
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mRNA from alignment at tig00000908_pilon:81306..82424-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3914.t1 ID=Ggra3914.t1|Name=Ggra3914.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000908_pilon:81306..82424- (Gracilaria gracilis GNS1m male)
ATGTCCACAAATGAATCCTTAACATATGCATCTTCAGGAGTTAATATCGA
GACCGAATCTGACAGTATTAAGTCTTTGATCTCAGCGCTTGGTCCAATAG
CGCACCGCAAGCCGGGCAGTCCTGGTGCCCCTGTTGCTCACTCTGGCGGC
TTTTCTGGCCTAATTGAATTTGGTGACAATCTGCTCGCGCTCTGTACGGA
TGGAGTGGGAAGCAAACTCTTACTCGCAGCTGAGATGGGTGTGTACGACA
CAGTTGCTATTGATTGCATGGCGATGAATGTCAATGATTTGCTATGTATA
GGTGCAGAACCATTGGCATTTGTAGACTATATTGCTGCACCTCAGCCAAA
CAAGGAAACGTGGGCTGCTCTAGGTCGCGGTTTGGGCGAAGCCTGTCGGC
GAGCGCGTGTGAGTCTCTGTGGCGGAGAGACAGCCAGTTTGCCTGACATG
GTTCGTGAAATAGACGTTAGTGGGACTGCGTTAGGCTGGCTACCGAAAGG
GAAACAGTTGGAAGGAAAAGTAAAGAGCGGCGATAAAATCATTGGACTCC
CGTCTTCTGGTATACATTCTAACGGATATTCGCTCGTAAGAAAGATCTTG
ACAAAGAGTGGTGCATCAATTACAGATATCGCTCCATTTGAAACTGGGAC
ACGAAGTGATGGGCTGTGGCGTCATCGTGACGGAGATGTGACTCTTGGGG
AAGTACTCTTAAACCCAACCAAAATCTACGTTGATCCAGTATCGGATCTA
CTTGAGGCGTGTCGGAAAGGCGAAGGACCCTGTAAGTATGATGATATTCA
CGGCATTGCTCATATTACCGGTGGTGGCCTATCTAATCTACTTCGTTTGG
GGTCCGACATTGGATTCGTCATCGACAACGCATTACCGATCTTACCAGAG
TTCAAATGGCTGCAGGAAACCGGTGAGATTTCAGGCTTTGAGATGTGGCG
CACGTTCAATATGGGCATGGGAATGGCTGTGATCGTATCAAAAGAATCGT
GCGCTACAGTTTCGAGCTGGCTTCAAGAGCGGCTAAATGGTTCGAAGCCT
GTTGGCTACGTAGATTCTGAGCGAAGAGTGCTTCAAGCTACGAATGGTGT
TGTTTTCGAAAAGTATTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:81306..82424-

>Ggra3914.t1 ID=Ggra3914.t1|Name=Ggra3914.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00000908_pilon:81306..82424- (Gracilaria gracilis GNS1m male)
ATGTCCACAAATGAATCCTTAACATATGCATCTTCAGGAGTTAATATCGA
GACCGAATCTGACAGTATTAAGTCTTTGATCTCAGCGCTTGGTCCAATAG
CGCACCGCAAGCCGGGCAGTCCTGGTGCCCCTGTTGCTCACTCTGGCGGC
TTTTCTGGCCTAATTGAATTTGGTGACAATCTGCTCGCGCTCTGTACGGA
TGGAGTGGGAAGCAAACTCTTACTCGCAGCTGAGATGGGTGTGTACGACA
CAGTTGCTATTGATTGCATGGCGATGAATGTCAATGATTTGCTATGTATA
GGTGCAGAACCATTGGCATTTGTAGACTATATTGCTGCACCTCAGCCAAA
CAAGGAAACGTGGGCTGCTCTAGGTCGCGGTTTGGGCGAAGCCTGTCGGC
GAGCGCGTGTGAGTCTCTGTGGCGGAGAGACAGCCAGTTTGCCTGACATG
GTTCGTGAAATAGACGTTAGTGGGACTGCGTTAGGCTGGCTACCGAAAGG
GAAACAGTTGGAAGGAAAAGTAAAGAGCGGCGATAAAATCATTGGACTCC
CGTCTTCTGGTATACATTCTAACGGATATTCGCTCGTAAGAAAGATCTTG
ACAAAGAGTGGTGCATCAATTACAGATATCGCTCCATTTGAAACTGGGAC
ACGAAGTGATGGGCTGTGGCGTCATCGTGACGGAGATGTGACTCTTGGGG
AAGTACTCTTAAACCCAACCAAAATCTACGTTGATCCAGTATCGGATCTA
CTTGAGGCGTGTCGGAAAGGCGAAGGACCCTGTAAGTATGATGATATTCA
CGGCATTGCTCATATTACCGGTGGTGGCCTATCTAATCTACTTCGTTTGG
GGTCCGACATTGGATTCGTCATCGACAACGCATTACCGATCTTACCAGAG
TTCAAATGGCTGCAGGAAACCGGTGAGATTTCAGGCTTTGAGATGTGGCG
CACGTTCAATATGGGCATGGGAATGGCTGTGATCGTATCAAAAGAATCGT
GCGCTACAGTTTCGAGCTGGCTTCAAGAGCGGCTAAATGGTTCGAAGCCT
GTTGGCTACGTAGATTCTGAGCGAAGAGTGCTTCAAGCTACGAATGGTGT
TGTTTTCGAAAAGTATTAG
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