Ggra3913.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3913.t1
Unique NameGgra3913.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:80695..81291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1424334.W822_01310
Preferred namefolA
PFAMsDHFR_1
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00109,RC00110,RC00158
KEGG koko:K00287
KEGG ReactionR00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathwayko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG ModuleM00126,M00840
Evalue2.6e-30
EggNOG OGsCOG0262@1|root,COG0262@2|Bacteria,1RH0P@1224|Proteobacteria,2VSH8@28216|Betaproteobacteria,3T3VD@506|Alcaligenaceae
EC1.5.1.3
DescriptionKey enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3913Ggra3913Gracilaria gracilis GNS1m malegenetig00000908_pilon 80695..81291 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3913.t1.start1Ggra3913.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 80695..80697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3913.t1.CDS1Ggra3913.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 80695..81291 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3913.t1.exon1Ggra3913.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 80695..81291 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3913.t1.stop1Ggra3913.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 81289..81291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3913.t1Ggra3913.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 80695..81291 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3913.t1 ID=Ggra3913.t1|Name=Ggra3913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=199bp
MSIVSLVVAYCRVNRVIGNRNSLPWPRLSMDMQRFAKLTAHHAVIMGRKT
FESNEINGLPLPHRRNIVLSRNTSWVPPSGVLHACDWDEAMLLADSGFGA
AGYHDGSHTVAVPTAPRHVFVIGGQSVYKLALRKGCQWVFATEIENEIRG
DTFFPQLPKEHWYAVQPEDCPKRWASSIPVQENGFSYSFVTYRKRDRT*
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spliced messenger RNA

>Ggra3913.t1 ID=Ggra3913.t1|Name=Ggra3913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000908_pilon:80695..81291+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAATCGTATCACTTGTTGTCGCTTATTGTCGCGTCAACAGAGTAAT
TGGAAACCGCAACTCTCTCCCATGGCCACGCCTTTCCATGGACATGCAGC
GCTTCGCCAAACTCACAGCTCATCATGCAGTAATTATGGGCCGAAAAACA
TTCGAGTCCAACGAGATAAACGGACTTCCCCTGCCACACAGACGAAATAT
AGTTCTGTCCAGAAACACTAGTTGGGTTCCTCCATCCGGAGTGCTCCACG
CATGCGATTGGGATGAAGCAATGCTGCTTGCTGATTCTGGCTTCGGTGCT
GCTGGTTATCATGATGGGTCTCACACAGTTGCAGTTCCTACTGCCCCGCG
CCATGTGTTTGTCATCGGCGGCCAATCTGTGTACAAGCTCGCTCTTCGAA
AGGGCTGTCAGTGGGTCTTCGCAACTGAAATTGAGAACGAAATAAGAGGC
GATACGTTCTTTCCTCAACTACCCAAAGAACACTGGTATGCCGTGCAGCC
TGAAGACTGTCCCAAGCGCTGGGCTTCTTCAATCCCTGTCCAGGAAAACG
GATTCTCTTATTCTTTTGTTACGTATAGAAAACGAGACCGCACATGA
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protein sequence of Ggra3913.t1

>Ggra3913.t1 ID=Ggra3913.t1|Name=Ggra3913.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MSIVSLVVAYCRVNRVIGNRNSLPWPRLSMDMQRFAKLTAHHAVIMGRKT
FESNEINGLPLPHRRNIVLSRNTSWVPPSGVLHACDWDEAMLLADSGFGA
AGYHDGSHTVAVPTAPRHVFVIGGQSVYKLALRKGCQWVFATEIENEIRG
DTFFPQLPKEHWYAVQPEDCPKRWASSIPVQENGFSYSFVTYRKRDRT*
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mRNA from alignment at tig00000908_pilon:80695..81291+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3913.t1 ID=Ggra3913.t1|Name=Ggra3913.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000908_pilon:80695..81291+ (Gracilaria gracilis GNS1m male)
ATGTCAATCGTATCACTTGTTGTCGCTTATTGTCGCGTCAACAGAGTAAT
TGGAAACCGCAACTCTCTCCCATGGCCACGCCTTTCCATGGACATGCAGC
GCTTCGCCAAACTCACAGCTCATCATGCAGTAATTATGGGCCGAAAAACA
TTCGAGTCCAACGAGATAAACGGACTTCCCCTGCCACACAGACGAAATAT
AGTTCTGTCCAGAAACACTAGTTGGGTTCCTCCATCCGGAGTGCTCCACG
CATGCGATTGGGATGAAGCAATGCTGCTTGCTGATTCTGGCTTCGGTGCT
GCTGGTTATCATGATGGGTCTCACACAGTTGCAGTTCCTACTGCCCCGCG
CCATGTGTTTGTCATCGGCGGCCAATCTGTGTACAAGCTCGCTCTTCGAA
AGGGCTGTCAGTGGGTCTTCGCAACTGAAATTGAGAACGAAATAAGAGGC
GATACGTTCTTTCCTCAACTACCCAAAGAACACTGGTATGCCGTGCAGCC
TGAAGACTGTCCCAAGCGCTGGGCTTCTTCAATCCCTGTCCAGGAAAACG
GATTCTCTTATTCTTTTGTTACGTATAGAAAACGAGACCGCACATGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:80695..81291+

>Ggra3913.t1 ID=Ggra3913.t1|Name=Ggra3913.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000908_pilon:80695..81291+ (Gracilaria gracilis GNS1m male)
ATGTCAATCGTATCACTTGTTGTCGCTTATTGTCGCGTCAACAGAGTAAT
TGGAAACCGCAACTCTCTCCCATGGCCACGCCTTTCCATGGACATGCAGC
GCTTCGCCAAACTCACAGCTCATCATGCAGTAATTATGGGCCGAAAAACA
TTCGAGTCCAACGAGATAAACGGACTTCCCCTGCCACACAGACGAAATAT
AGTTCTGTCCAGAAACACTAGTTGGGTTCCTCCATCCGGAGTGCTCCACG
CATGCGATTGGGATGAAGCAATGCTGCTTGCTGATTCTGGCTTCGGTGCT
GCTGGTTATCATGATGGGTCTCACACAGTTGCAGTTCCTACTGCCCCGCG
CCATGTGTTTGTCATCGGCGGCCAATCTGTGTACAAGCTCGCTCTTCGAA
AGGGCTGTCAGTGGGTCTTCGCAACTGAAATTGAGAACGAAATAAGAGGC
GATACGTTCTTTCCTCAACTACCCAAAGAACACTGGTATGCCGTGCAGCC
TGAAGACTGTCCCAAGCGCTGGGCTTCTTCAATCCCTGTCCAGGAAAACG
GATTCTCTTATTCTTTTGTTACGTATAGAAAACGAGACCGCACATGA
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