Ggra3909.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3909.t1
Unique NameGgra3909.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:67885..68862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173025.GEI7407_1855
Preferred namecry
PFAMsDNA_photolyase,FAD_binding_7
Max annot lvl1117|Cyanobacteria
KEGG koko:K01669
Evalue5.87e-26
EggNOG OGsCOG0415@1|root,COG0415@2|Bacteria,1G1HV@1117|Cyanobacteria,1H98R@1150|Oscillatoriales
EC4.1.99.3
DescriptionDNA photolyase
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3909Ggra3909Gracilaria gracilis GNS1m malegenetig00000908_pilon 67885..68862 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3909.t1.stop1Ggra3909.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 67885..67887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3909.t1.CDS1Ggra3909.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 67885..68862 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3909.t1.exon1Ggra3909.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 67885..68862 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3909.t1.start1Ggra3909.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 68860..68862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3909.t1Ggra3909.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 67885..68862 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3909.t1 ID=Ggra3909.t1|Name=Ggra3909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MGAFVAPLSLPSALVQRAQPSCAAVNSRGVSCAIAPSPVPLPSNALRIDA
HGEQPKPGATGTHTVVVWFRCDLRLHDNPCLTGLQQCAVAPLLLLPRVPT
QPLLDAAHDLRAALRERGTELYVRPAGDDVALTVRQFCESVHATHLHLAA
DVSREARIEEQRVQREVASAGTSVIKFWSGGLLSPEQLPFGMQDLPEDCD
AFAKAVRSVSISEPLPVPRAFHGVSDVACGQIPGRGRGAGGEQVALKGLD
EYCNGALAKVQGGKLHTSFGRLGPFLEMGCVSPRLLWDRVVARGELSVRR
YCAEFELMWREFARFMTLKHGQLPA*
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spliced messenger RNA

>Ggra3909.t1 ID=Ggra3909.t1|Name=Ggra3909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000908_pilon:67885..68862- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCTTCGTCGCTCCGCTCTCGCTGCCTTCCGCGCTTGTACAGCG
CGCGCAGCCGTCATGCGCCGCCGTCAATTCGCGCGGCGTTTCATGTGCAA
TCGCGCCATCTCCAGTGCCGCTGCCGAGCAACGCGCTGCGGATCGATGCT
CACGGCGAACAGCCCAAGCCGGGCGCCACCGGCACCCACACGGTTGTGGT
GTGGTTTCGATGCGACCTCCGACTTCACGATAATCCGTGCCTGACGGGCT
TGCAGCAATGTGCAGTGGCGCCGCTGCTGCTGCTGCCGCGCGTGCCCACG
CAGCCGCTGCTCGACGCGGCGCATGACCTGCGCGCCGCGCTGCGAGAACG
CGGCACTGAGCTGTACGTGCGGCCGGCTGGCGACGATGTTGCGCTGACGG
TGCGACAGTTTTGTGAGAGCGTGCACGCGACACACCTGCACTTGGCGGCG
GACGTGAGCAGAGAAGCGCGCATAGAGGAACAGCGTGTGCAGCGCGAGGT
GGCAAGTGCCGGCACGTCGGTGATAAAGTTTTGGAGCGGCGGGCTGTTAA
GTCCCGAGCAGCTGCCGTTTGGTATGCAAGATCTACCCGAGGACTGCGAC
GCGTTCGCGAAAGCCGTACGAAGCGTGAGCATCTCCGAGCCGCTACCGGT
GCCGCGCGCGTTCCACGGCGTGAGCGATGTGGCATGCGGGCAGATCCCCG
GGCGCGGGCGGGGCGCGGGCGGCGAGCAGGTGGCGCTCAAGGGACTGGAC
GAATACTGCAACGGCGCGCTGGCCAAGGTGCAGGGCGGCAAGCTGCACAC
CAGCTTCGGCCGCCTCGGGCCGTTCTTGGAGATGGGCTGCGTGTCGCCGC
GGCTGCTGTGGGACCGCGTCGTGGCGCGCGGCGAGCTCAGCGTGCGACGG
TACTGCGCCGAGTTCGAGCTCATGTGGCGCGAGTTCGCGCGCTTCATGAC
GCTCAAGCACGGCCAACTGCCCGCGTGA
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protein sequence of Ggra3909.t1

>Ggra3909.t1 ID=Ggra3909.t1|Name=Ggra3909.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MGAFVAPLSLPSALVQRAQPSCAAVNSRGVSCAIAPSPVPLPSNALRIDA
HGEQPKPGATGTHTVVVWFRCDLRLHDNPCLTGLQQCAVAPLLLLPRVPT
QPLLDAAHDLRAALRERGTELYVRPAGDDVALTVRQFCESVHATHLHLAA
DVSREARIEEQRVQREVASAGTSVIKFWSGGLLSPEQLPFGMQDLPEDCD
AFAKAVRSVSISEPLPVPRAFHGVSDVACGQIPGRGRGAGGEQVALKGLD
EYCNGALAKVQGGKLHTSFGRLGPFLEMGCVSPRLLWDRVVARGELSVRR
YCAEFELMWREFARFMTLKHGQLPA*
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mRNA from alignment at tig00000908_pilon:67885..68862-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3909.t1 ID=Ggra3909.t1|Name=Ggra3909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000908_pilon:67885..68862- (Gracilaria gracilis GNS1m male)
ATGGGCGCCTTCGTCGCTCCGCTCTCGCTGCCTTCCGCGCTTGTACAGCG
CGCGCAGCCGTCATGCGCCGCCGTCAATTCGCGCGGCGTTTCATGTGCAA
TCGCGCCATCTCCAGTGCCGCTGCCGAGCAACGCGCTGCGGATCGATGCT
CACGGCGAACAGCCCAAGCCGGGCGCCACCGGCACCCACACGGTTGTGGT
GTGGTTTCGATGCGACCTCCGACTTCACGATAATCCGTGCCTGACGGGCT
TGCAGCAATGTGCAGTGGCGCCGCTGCTGCTGCTGCCGCGCGTGCCCACG
CAGCCGCTGCTCGACGCGGCGCATGACCTGCGCGCCGCGCTGCGAGAACG
CGGCACTGAGCTGTACGTGCGGCCGGCTGGCGACGATGTTGCGCTGACGG
TGCGACAGTTTTGTGAGAGCGTGCACGCGACACACCTGCACTTGGCGGCG
GACGTGAGCAGAGAAGCGCGCATAGAGGAACAGCGTGTGCAGCGCGAGGT
GGCAAGTGCCGGCACGTCGGTGATAAAGTTTTGGAGCGGCGGGCTGTTAA
GTCCCGAGCAGCTGCCGTTTGGTATGCAAGATCTACCCGAGGACTGCGAC
GCGTTCGCGAAAGCCGTACGAAGCGTGAGCATCTCCGAGCCGCTACCGGT
GCCGCGCGCGTTCCACGGCGTGAGCGATGTGGCATGCGGGCAGATCCCCG
GGCGCGGGCGGGGCGCGGGCGGCGAGCAGGTGGCGCTCAAGGGACTGGAC
GAATACTGCAACGGCGCGCTGGCCAAGGTGCAGGGCGGCAAGCTGCACAC
CAGCTTCGGCCGCCTCGGGCCGTTCTTGGAGATGGGCTGCGTGTCGCCGC
GGCTGCTGTGGGACCGCGTCGTGGCGCGCGGCGAGCTCAGCGTGCGACGG
TACTGCGCCGAGTTCGAGCTCATGTGGCGCGAGTTCGCGCGCTTCATGAC
GCTCAAGCACGGCCAACTGCCCGCGTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:67885..68862-

>Ggra3909.t1 ID=Ggra3909.t1|Name=Ggra3909.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000908_pilon:67885..68862- (Gracilaria gracilis GNS1m male)
ATGGGCGCCTTCGTCGCTCCGCTCTCGCTGCCTTCCGCGCTTGTACAGCG
CGCGCAGCCGTCATGCGCCGCCGTCAATTCGCGCGGCGTTTCATGTGCAA
TCGCGCCATCTCCAGTGCCGCTGCCGAGCAACGCGCTGCGGATCGATGCT
CACGGCGAACAGCCCAAGCCGGGCGCCACCGGCACCCACACGGTTGTGGT
GTGGTTTCGATGCGACCTCCGACTTCACGATAATCCGTGCCTGACGGGCT
TGCAGCAATGTGCAGTGGCGCCGCTGCTGCTGCTGCCGCGCGTGCCCACG
CAGCCGCTGCTCGACGCGGCGCATGACCTGCGCGCCGCGCTGCGAGAACG
CGGCACTGAGCTGTACGTGCGGCCGGCTGGCGACGATGTTGCGCTGACGG
TGCGACAGTTTTGTGAGAGCGTGCACGCGACACACCTGCACTTGGCGGCG
GACGTGAGCAGAGAAGCGCGCATAGAGGAACAGCGTGTGCAGCGCGAGGT
GGCAAGTGCCGGCACGTCGGTGATAAAGTTTTGGAGCGGCGGGCTGTTAA
GTCCCGAGCAGCTGCCGTTTGGTATGCAAGATCTACCCGAGGACTGCGAC
GCGTTCGCGAAAGCCGTACGAAGCGTGAGCATCTCCGAGCCGCTACCGGT
GCCGCGCGCGTTCCACGGCGTGAGCGATGTGGCATGCGGGCAGATCCCCG
GGCGCGGGCGGGGCGCGGGCGGCGAGCAGGTGGCGCTCAAGGGACTGGAC
GAATACTGCAACGGCGCGCTGGCCAAGGTGCAGGGCGGCAAGCTGCACAC
CAGCTTCGGCCGCCTCGGGCCGTTCTTGGAGATGGGCTGCGTGTCGCCGC
GGCTGCTGTGGGACCGCGTCGTGGCGCGCGGCGAGCTCAGCGTGCGACGG
TACTGCGCCGAGTTCGAGCTCATGTGGCGCGAGTTCGCGCGCTTCATGAC
GCTCAAGCACGGCCAACTGCCCGCGTGA
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