Ggra3906.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3906.t1
Unique NameGgra3906.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:59949..61421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004346183.1
Preferred nameDNPEP
PFAMsPeptidase_M18
Max annot lvl33154|Opisthokonta
KEGG koko:K01267
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0042802,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue6.13e-142
EggNOG OGsCOG1362@1|root,KOG2596@2759|Eukaryota,38CES@33154|Opisthokonta
EC3.4.11.21
DescriptionBelongs to the peptidase M18 family
COG categoryE
BRITEko00000,ko01000,ko01002,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3906Ggra3906Gracilaria gracilis GNS1m malegenetig00000908_pilon 59949..61421 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3906.t1.start1Ggra3906.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 59949..59951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3906.t1.CDS1Ggra3906.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 59949..61421 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3906.t1.exon1Ggra3906.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 59949..61421 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3906.t1.stop1Ggra3906.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 61419..61421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3906.t1Ggra3906.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 59949..61421 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3906.t1 ID=Ggra3906.t1|Name=Ggra3906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=491bp
MNTSITMESPKPEKSNVVEKFLHFNDNSRSPFHAVQSIASMLREASFQTI
SETDDWSKTLKAGGRYMFSSHGSSIVAFTVPSVIDERQFAFNVIGAHTDS
PCFKVKPVSKLSAHGYLQVGVECYGGGLWHTWFDRDLTVAGRVIVRTPDG
KHSIRLVSLDKPILRIPNLAIHLSRNVNTEGFKVNKETDTRPIMATQLFV
AASEHMNSTTATNGTPEEDKKDESPASKRHAPLLLKVLANALGVSPKNIV
DIDLCVADTQPAAIGGALGEFVFAPRLDNLASCFTATQSLIDAMNEAEGE
SVPEVCRMITCFDHEEIGSRSSHGADSPLLSSTMERICAALNVSCGRVLP
RSLLISADMAHAIHPNYHTKHENNHRPELGNGLVVKTNQNQRYATSGVSG
FLVREAARRAGNVCIQEFVVPNDKPCGSTIGPLLSSRTGLRTVDVGQAQL
SMHSIREMCSGLDFSNVIEVFKELLKNQSVILAEMEGLEL*
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spliced messenger RNA

>Ggra3906.t1 ID=Ggra3906.t1|Name=Ggra3906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000908_pilon:59949..61421+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACCAGCATTACAATGGAAAGCCCCAAACCCGAGAAAAGCAATGT
CGTCGAGAAGTTTCTCCACTTCAACGACAACAGCCGTTCTCCCTTCCATG
CCGTTCAGAGCATCGCTTCAATGTTACGCGAAGCTTCGTTTCAAACAATA
TCTGAAACCGATGATTGGAGTAAAACCCTAAAGGCTGGGGGCCGTTATAT
GTTCAGTTCACACGGATCATCCATCGTCGCATTTACTGTTCCGTCCGTCA
TCGATGAACGCCAATTTGCGTTCAACGTGATCGGAGCACATACAGATTCT
CCATGCTTCAAAGTCAAACCGGTATCCAAGCTTTCCGCGCATGGGTACTT
GCAAGTTGGAGTTGAATGTTATGGCGGTGGTCTGTGGCACACGTGGTTCG
ATCGCGATCTCACTGTCGCCGGACGCGTCATAGTGCGCACTCCAGATGGC
AAACACTCTATCAGACTTGTTTCACTTGACAAACCTATACTGAGAATCCC
AAATCTTGCCATACATCTGTCGCGAAACGTGAACACGGAAGGATTTAAGG
TGAACAAAGAGACCGACACAAGGCCCATTATGGCCACACAACTATTCGTG
GCCGCCAGCGAACACATGAATTCCACCACCGCTACAAACGGAACACCGGA
GGAAGACAAGAAGGATGAAAGCCCAGCATCCAAACGACACGCTCCGTTAT
TATTGAAAGTTCTTGCAAATGCACTTGGCGTTTCGCCAAAGAACATTGTT
GACATTGACCTATGTGTGGCGGATACTCAACCAGCTGCCATTGGCGGCGC
GCTAGGCGAGTTCGTATTTGCGCCACGATTGGATAACCTTGCTTCATGTT
TTACGGCCACGCAGTCATTGATCGATGCAATGAATGAAGCGGAAGGGGAA
AGTGTGCCAGAAGTATGTCGAATGATAACTTGTTTCGATCATGAGGAAAT
TGGCTCTCGATCATCACACGGCGCTGATTCACCTTTGTTGTCGTCCACAA
TGGAACGTATATGTGCGGCGCTGAATGTATCGTGCGGAAGGGTGCTACCA
CGAAGTCTACTCATTAGTGCGGATATGGCACACGCCATCCATCCAAATTA
TCATACAAAGCACGAAAACAACCATCGCCCTGAGCTTGGAAATGGATTGG
TTGTGAAGACGAACCAGAATCAGCGGTATGCCACTTCAGGCGTGTCTGGG
TTCCTGGTACGTGAAGCGGCTAGACGAGCTGGCAATGTATGCATTCAGGA
GTTTGTGGTTCCGAATGACAAGCCGTGTGGTTCGACAATTGGACCGCTGC
TGTCTAGTCGCACCGGGTTGAGGACGGTGGACGTGGGACAGGCGCAGCTG
AGCATGCATTCGATCCGCGAGATGTGCTCAGGGCTAGATTTTAGCAACGT
GATTGAGGTATTCAAGGAGCTGTTGAAGAACCAGAGCGTAATTTTAGCGG
AGATGGAAGGGCTCGAACTGTAG
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protein sequence of Ggra3906.t1

>Ggra3906.t1 ID=Ggra3906.t1|Name=Ggra3906.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MNTSITMESPKPEKSNVVEKFLHFNDNSRSPFHAVQSIASMLREASFQTI
SETDDWSKTLKAGGRYMFSSHGSSIVAFTVPSVIDERQFAFNVIGAHTDS
PCFKVKPVSKLSAHGYLQVGVECYGGGLWHTWFDRDLTVAGRVIVRTPDG
KHSIRLVSLDKPILRIPNLAIHLSRNVNTEGFKVNKETDTRPIMATQLFV
AASEHMNSTTATNGTPEEDKKDESPASKRHAPLLLKVLANALGVSPKNIV
DIDLCVADTQPAAIGGALGEFVFAPRLDNLASCFTATQSLIDAMNEAEGE
SVPEVCRMITCFDHEEIGSRSSHGADSPLLSSTMERICAALNVSCGRVLP
RSLLISADMAHAIHPNYHTKHENNHRPELGNGLVVKTNQNQRYATSGVSG
FLVREAARRAGNVCIQEFVVPNDKPCGSTIGPLLSSRTGLRTVDVGQAQL
SMHSIREMCSGLDFSNVIEVFKELLKNQSVILAEMEGLEL*
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mRNA from alignment at tig00000908_pilon:59949..61421+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3906.t1 ID=Ggra3906.t1|Name=Ggra3906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000908_pilon:59949..61421+ (Gracilaria gracilis GNS1m male)
ATGAACACCAGCATTACAATGGAAAGCCCCAAACCCGAGAAAAGCAATGT
CGTCGAGAAGTTTCTCCACTTCAACGACAACAGCCGTTCTCCCTTCCATG
CCGTTCAGAGCATCGCTTCAATGTTACGCGAAGCTTCGTTTCAAACAATA
TCTGAAACCGATGATTGGAGTAAAACCCTAAAGGCTGGGGGCCGTTATAT
GTTCAGTTCACACGGATCATCCATCGTCGCATTTACTGTTCCGTCCGTCA
TCGATGAACGCCAATTTGCGTTCAACGTGATCGGAGCACATACAGATTCT
CCATGCTTCAAAGTCAAACCGGTATCCAAGCTTTCCGCGCATGGGTACTT
GCAAGTTGGAGTTGAATGTTATGGCGGTGGTCTGTGGCACACGTGGTTCG
ATCGCGATCTCACTGTCGCCGGACGCGTCATAGTGCGCACTCCAGATGGC
AAACACTCTATCAGACTTGTTTCACTTGACAAACCTATACTGAGAATCCC
AAATCTTGCCATACATCTGTCGCGAAACGTGAACACGGAAGGATTTAAGG
TGAACAAAGAGACCGACACAAGGCCCATTATGGCCACACAACTATTCGTG
GCCGCCAGCGAACACATGAATTCCACCACCGCTACAAACGGAACACCGGA
GGAAGACAAGAAGGATGAAAGCCCAGCATCCAAACGACACGCTCCGTTAT
TATTGAAAGTTCTTGCAAATGCACTTGGCGTTTCGCCAAAGAACATTGTT
GACATTGACCTATGTGTGGCGGATACTCAACCAGCTGCCATTGGCGGCGC
GCTAGGCGAGTTCGTATTTGCGCCACGATTGGATAACCTTGCTTCATGTT
TTACGGCCACGCAGTCATTGATCGATGCAATGAATGAAGCGGAAGGGGAA
AGTGTGCCAGAAGTATGTCGAATGATAACTTGTTTCGATCATGAGGAAAT
TGGCTCTCGATCATCACACGGCGCTGATTCACCTTTGTTGTCGTCCACAA
TGGAACGTATATGTGCGGCGCTGAATGTATCGTGCGGAAGGGTGCTACCA
CGAAGTCTACTCATTAGTGCGGATATGGCACACGCCATCCATCCAAATTA
TCATACAAAGCACGAAAACAACCATCGCCCTGAGCTTGGAAATGGATTGG
TTGTGAAGACGAACCAGAATCAGCGGTATGCCACTTCAGGCGTGTCTGGG
TTCCTGGTACGTGAAGCGGCTAGACGAGCTGGCAATGTATGCATTCAGGA
GTTTGTGGTTCCGAATGACAAGCCGTGTGGTTCGACAATTGGACCGCTGC
TGTCTAGTCGCACCGGGTTGAGGACGGTGGACGTGGGACAGGCGCAGCTG
AGCATGCATTCGATCCGCGAGATGTGCTCAGGGCTAGATTTTAGCAACGT
GATTGAGGTATTCAAGGAGCTGTTGAAGAACCAGAGCGTAATTTTAGCGG
AGATGGAAGGGCTCGAACTGTAG
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Coding sequence (CDS) from alignment at tig00000908_pilon:59949..61421+

>Ggra3906.t1 ID=Ggra3906.t1|Name=Ggra3906.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00000908_pilon:59949..61421+ (Gracilaria gracilis GNS1m male)
ATGAACACCAGCATTACAATGGAAAGCCCCAAACCCGAGAAAAGCAATGT
CGTCGAGAAGTTTCTCCACTTCAACGACAACAGCCGTTCTCCCTTCCATG
CCGTTCAGAGCATCGCTTCAATGTTACGCGAAGCTTCGTTTCAAACAATA
TCTGAAACCGATGATTGGAGTAAAACCCTAAAGGCTGGGGGCCGTTATAT
GTTCAGTTCACACGGATCATCCATCGTCGCATTTACTGTTCCGTCCGTCA
TCGATGAACGCCAATTTGCGTTCAACGTGATCGGAGCACATACAGATTCT
CCATGCTTCAAAGTCAAACCGGTATCCAAGCTTTCCGCGCATGGGTACTT
GCAAGTTGGAGTTGAATGTTATGGCGGTGGTCTGTGGCACACGTGGTTCG
ATCGCGATCTCACTGTCGCCGGACGCGTCATAGTGCGCACTCCAGATGGC
AAACACTCTATCAGACTTGTTTCACTTGACAAACCTATACTGAGAATCCC
AAATCTTGCCATACATCTGTCGCGAAACGTGAACACGGAAGGATTTAAGG
TGAACAAAGAGACCGACACAAGGCCCATTATGGCCACACAACTATTCGTG
GCCGCCAGCGAACACATGAATTCCACCACCGCTACAAACGGAACACCGGA
GGAAGACAAGAAGGATGAAAGCCCAGCATCCAAACGACACGCTCCGTTAT
TATTGAAAGTTCTTGCAAATGCACTTGGCGTTTCGCCAAAGAACATTGTT
GACATTGACCTATGTGTGGCGGATACTCAACCAGCTGCCATTGGCGGCGC
GCTAGGCGAGTTCGTATTTGCGCCACGATTGGATAACCTTGCTTCATGTT
TTACGGCCACGCAGTCATTGATCGATGCAATGAATGAAGCGGAAGGGGAA
AGTGTGCCAGAAGTATGTCGAATGATAACTTGTTTCGATCATGAGGAAAT
TGGCTCTCGATCATCACACGGCGCTGATTCACCTTTGTTGTCGTCCACAA
TGGAACGTATATGTGCGGCGCTGAATGTATCGTGCGGAAGGGTGCTACCA
CGAAGTCTACTCATTAGTGCGGATATGGCACACGCCATCCATCCAAATTA
TCATACAAAGCACGAAAACAACCATCGCCCTGAGCTTGGAAATGGATTGG
TTGTGAAGACGAACCAGAATCAGCGGTATGCCACTTCAGGCGTGTCTGGG
TTCCTGGTACGTGAAGCGGCTAGACGAGCTGGCAATGTATGCATTCAGGA
GTTTGTGGTTCCGAATGACAAGCCGTGTGGTTCGACAATTGGACCGCTGC
TGTCTAGTCGCACCGGGTTGAGGACGGTGGACGTGGGACAGGCGCAGCTG
AGCATGCATTCGATCCGCGAGATGTGCTCAGGGCTAGATTTTAGCAACGT
GATTGAGGTATTCAAGGAGCTGTTGAAGAACCAGAGCGTAATTTTAGCGG
AGATGGAAGGGCTCGAACTGTAG
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