Ggra3904.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3904.t1
Unique NameGgra3904.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:57543..58104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3904Ggra3904Gracilaria gracilis GNS1m malegenetig00000908_pilon 57543..58104 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3904.t1Ggra3904.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 57543..58104 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3904.t1.stop1Ggra3904.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 57543..57545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3904.t1.CDS1Ggra3904.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 57543..57606 -
Ggra3904.t1.CDS2Ggra3904.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 57700..57852 -
Ggra3904.t1.CDS3Ggra3904.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000908_pilon 57935..58104 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3904.t1.exon1Ggra3904.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 57543..57606 -
Ggra3904.t1.exon2Ggra3904.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 57700..57852 -
Ggra3904.t1.exon3Ggra3904.t1.exon3Gracilaria gracilis GNS1m maleexontig00000908_pilon 57935..58104 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3904.t1.intron1Ggra3904.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 57607..57699 -
Ggra3904.t1.intron2Ggra3904.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000908_pilon 57853..57934 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3904.t1.start1Ggra3904.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 58102..58104 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3904.t1 ID=Ggra3904.t1|Name=Ggra3904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=129bp
MDTQKDEIVDAESGASASAHANEEHTENVHGAAVQSLISQLQNDQQMSAM
KHEQSATLNELQRLKEQIGTLNKQSAEQYNAMAPEFIRAARLAAQVKADL
NDISTGLHTIQTKINELHALQQSENDAH*
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spliced messenger RNA

>Ggra3904.t1 ID=Ggra3904.t1|Name=Ggra3904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00000908_pilon:57543..58104- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACTCAGAAAGACGAAATTGTCGACGCTGAGAGCGGCGCCAGTGC
TTCGGCGCATGCGAACGAAGAGCATACCGAAAATGTTCATGGCGCGGCGG
TTCAGTCGTTGATTTCACAGCTTCAAAATGATCAACAAATGAGCGCCATG
AAGCACGAACAATCCGCAACATTGAATGAGCTACAACGATTGAAAGAACA
AATTGGTACGTTGAATAAACAGAGCGCGGAACAGTACAATGCCATGGCGC
CGGAGTTTATTCGTGCTGCTCGACTTGCGGCGCAAGTCAAAGCTGATTTG
AATGATATTTCCACCGGGTTGCATACTATTCAAACAAAGATCAATGAGCT
ACATGCTCTACAACAAAGTGAAAATGACGCACACTAA
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protein sequence of Ggra3904.t1

>Ggra3904.t1 ID=Ggra3904.t1|Name=Ggra3904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=129bp
MDTQKDEIVDAESGASASAHANEEHTENVHGAAVQSLISQLQNDQQMSAM
KHEQSATLNELQRLKEQIGTLNKQSAEQYNAMAPEFIRAARLAAQVKADL
NDISTGLHTIQTKINELHALQQSENDAH*
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mRNA from alignment at tig00000908_pilon:57543..58104-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3904.t1 ID=Ggra3904.t1|Name=Ggra3904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp|location=Sequence derived from alignment at tig00000908_pilon:57543..58104- (Gracilaria gracilis GNS1m male)
ATGGACACTCAGAAAGACGAAATTGTCGACGCTGAGAGCGGCGCCAGTGC
TTCGGCGCATGCGAACGAAGAGCATACCGAAAATGTTCATGGCGCGGCGG
TTCAGTCGTTGATTTCACAGCTTCAAAATGATCAACAAATGAGCGCCATG
AAGCACGAACAATCCGCAACGTATGTCAGCTGTTTTTGTCTTCTCTTTTA
TTCCAACCTGCCTCTCACATAAAACATGTTTCTATCGCTTGCTTTGGGGC
AGATTGAATGAGCTACAACGATTGAAAGAACAAATTGGTACGTTGAATAA
ACAGAGCGCGGAACAGTACAATGCCATGGCGCCGGAGTTTATTCGTGCTG
CTCGACTTGCGGCGCAAGTCAAAGCTGATTTGAATGATATTTCCACCGGG
TTGCAGTAAGTTTTTTATTAGTCCCATCTTTCGTAAGAAGATTTTTTTTT
TTTTCTTGGAAGCAGTTTCTTACATTGCTTGCGTTGTCTTCATAATAGTA
CTATTCAAACAAAGATCAATGAGCTACATGCTCTACAACAAAGTGAAAAT
GACGCACACTAA
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Coding sequence (CDS) from alignment at tig00000908_pilon:57543..58104-

>Ggra3904.t1 ID=Ggra3904.t1|Name=Ggra3904.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00000908_pilon:57543..58104- (Gracilaria gracilis GNS1m male)
ATGGACACTCAGAAAGACGAAATTGTCGACGCTGAGAGCGGCGCCAGTGC
TTCGGCGCATGCGAACGAAGAGCATACCGAAAATGTTCATGGCGCGGCGG
TTCAGTCGTTGATTTCACAGCTTCAAAATGATCAACAAATGAGCGCCATG
AAGCACGAACAATCCGCAACATTGAATGAGCTACAACGATTGAAAGAACA
AATTGGTACGTTGAATAAACAGAGCGCGGAACAGTACAATGCCATGGCGC
CGGAGTTTATTCGTGCTGCTCGACTTGCGGCGCAAGTCAAAGCTGATTTG
AATGATATTTCCACCGGGTTGCATACTATTCAAACAAAGATCAATGAGCT
ACATGCTCTACAACAAAGTGAAAATGACGCACACTAA
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