Ggra3901.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3901.t1
Unique NameGgra3901.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:53802..55132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7209.EJD75529.1
PFAMsVEFS-Box
Max annot lvl33208|Metazoa
KEGG koko:K11463
Evalue0.000148
EggNOG OGsKOG2350@1|root,KOG2350@2759|Eukaryota,392NH@33154|Opisthokonta,3C80R@33208|Metazoa,3DP1F@33213|Bilateria,40HGG@6231|Nematoda,1M0FW@119089|Chromadorea
DescriptionVEFS-Box of polycomb protein
COG categoryS
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3901Ggra3901Gracilaria gracilis GNS1m malegenetig00000908_pilon 53584..55132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3901.t1Ggra3901.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 53802..55132 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3901.t1.start1Ggra3901.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 53802..53804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3901.t1.CDS1Ggra3901.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 53802..53876 +
Ggra3901.t1.CDS2Ggra3901.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 53945..55132 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3901.t1.exon1Ggra3901.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 53802..53876 +
Ggra3901.t1.exon2Ggra3901.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 53945..55132 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3901.t1.intron1Ggra3901.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 53877..53944 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3901.t1.stop1Ggra3901.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 55130..55132 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3901.t1 ID=Ggra3901.t1|Name=Ggra3901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=421bp
MPHTSSVVASKEPHPEQKNVREAFHEARRLYGILAWRYRHSRLFLPRTLR
RSPEKSQKSTTYPSVKYVSNEPFVTWSEYVPQLRCLWCGDMFYRFSSGTE
LVSHLETCHGRFAYEFIQSAKNKVTRSKPGKEAAYIIQLKLQRGEQAALV
SSDGVPHAYNIESVYYNSSGFHNPVRRRASTNPSPSHCTILLREPTLPVP
RAQHDHENVQEEVRKKHAADTEDADYRPTKRAKRVLESNKKKKVGKPAFK
TISAALKDKRLYNSVVQRELQAEEYENGADSDAESESREERKWRLRVVDD
EIEEYVDTIAVEKLFMNLWNQFVKMEHPVKSDREIAPACLEFVQKYRRTL
IRYNLEVTFLRHLTEFTRMGLLDAVSVFDIFQVLRNRDMSGPSGGGDEPK
FLYAERLKKEGPEGKRIRYA*
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spliced messenger RNA

>Ggra3901.t1 ID=Ggra3901.t1|Name=Ggra3901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000908_pilon:53802..55132+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCATACTTCTTCTGTCGTAGCTTCAAAGGAACCACATCCTGAGCA
GAAGAACGTCCGAGAAGCGTTTCATGAAGCTCGTCGTTTATATGGTATCC
TAGCGTGGCGGTACCGCCATTCACGTCTTTTTCTTCCTCGCACGTTGCGG
AGAAGCCCTGAAAAATCTCAGAAATCCACCACATACCCGAGCGTCAAGTA
CGTCTCTAATGAGCCCTTTGTCACATGGAGCGAATACGTACCACAGTTGC
GATGTCTATGGTGTGGGGATATGTTTTATCGCTTTTCAAGCGGAACGGAG
CTAGTAAGCCATTTGGAAACATGCCACGGCAGATTTGCGTACGAATTCAT
TCAATCTGCGAAGAACAAGGTCACGAGGAGTAAGCCTGGTAAAGAAGCTG
CGTACATTATTCAACTAAAACTACAACGTGGAGAACAGGCGGCACTGGTT
TCATCTGATGGCGTTCCACACGCGTACAATATCGAATCCGTCTACTACAA
TTCATCAGGCTTCCATAACCCCGTTAGAAGACGCGCGAGCACCAATCCAT
CACCGTCACATTGCACCATTCTACTGCGTGAACCTACCCTCCCGGTCCCT
CGAGCGCAACACGACCATGAAAATGTGCAGGAAGAAGTAAGGAAGAAACA
TGCGGCAGACACGGAAGATGCAGACTACCGGCCGACGAAACGTGCCAAAC
GGGTTTTGGAAAGCAACAAGAAGAAGAAGGTTGGAAAGCCTGCATTTAAA
ACCATTTCTGCTGCTCTAAAGGACAAGAGGCTATACAACTCGGTTGTGCA
ACGTGAACTACAAGCGGAGGAATATGAAAACGGCGCCGATTCCGATGCCG
AAAGCGAAAGTCGAGAGGAACGTAAATGGAGATTACGGGTGGTAGATGAC
GAAATTGAAGAATATGTAGATACCATTGCGGTCGAAAAGCTGTTCATGAA
CCTGTGGAACCAATTCGTGAAAATGGAGCATCCCGTCAAGTCTGACAGAG
AAATTGCTCCAGCGTGTCTAGAATTCGTGCAGAAGTACCGCAGAACTCTG
ATTCGATATAATCTTGAAGTCACATTTCTTCGACATCTTACCGAGTTTAC
GCGTATGGGTTTGCTCGACGCCGTTAGTGTTTTCGACATATTCCAAGTAC
TGAGAAATCGCGATATGTCGGGACCATCAGGTGGAGGTGATGAGCCAAAG
TTCTTGTATGCGGAAAGACTCAAAAAGGAGGGTCCGGAAGGAAAACGAAT
TCGATACGCTTGA
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protein sequence of Ggra3901.t1

>Ggra3901.t1 ID=Ggra3901.t1|Name=Ggra3901.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=421bp
MPHTSSVVASKEPHPEQKNVREAFHEARRLYGILAWRYRHSRLFLPRTLR
RSPEKSQKSTTYPSVKYVSNEPFVTWSEYVPQLRCLWCGDMFYRFSSGTE
LVSHLETCHGRFAYEFIQSAKNKVTRSKPGKEAAYIIQLKLQRGEQAALV
SSDGVPHAYNIESVYYNSSGFHNPVRRRASTNPSPSHCTILLREPTLPVP
RAQHDHENVQEEVRKKHAADTEDADYRPTKRAKRVLESNKKKKVGKPAFK
TISAALKDKRLYNSVVQRELQAEEYENGADSDAESESREERKWRLRVVDD
EIEEYVDTIAVEKLFMNLWNQFVKMEHPVKSDREIAPACLEFVQKYRRTL
IRYNLEVTFLRHLTEFTRMGLLDAVSVFDIFQVLRNRDMSGPSGGGDEPK
FLYAERLKKEGPEGKRIRYA*
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mRNA from alignment at tig00000908_pilon:53802..55132+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3901.t1 ID=Ggra3901.t1|Name=Ggra3901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1331bp|location=Sequence derived from alignment at tig00000908_pilon:53802..55132+ (Gracilaria gracilis GNS1m male)
ATGCCTCATACTTCTTCTGTCGTAGCTTCAAAGGAACCACATCCTGAGCA
GAAGAACGTCCGAGAAGCGTTTCATGTACGTTGTCCACCGTGTCTTTTCT
CATCCTTTGCGAATCTCTAACGGTATTCATTCTCCACATTTAGGAAGCTC
GTCGTTTATATGGTATCCTAGCGTGGCGGTACCGCCATTCACGTCTTTTT
CTTCCTCGCACGTTGCGGAGAAGCCCTGAAAAATCTCAGAAATCCACCAC
ATACCCGAGCGTCAAGTACGTCTCTAATGAGCCCTTTGTCACATGGAGCG
AATACGTACCACAGTTGCGATGTCTATGGTGTGGGGATATGTTTTATCGC
TTTTCAAGCGGAACGGAGCTAGTAAGCCATTTGGAAACATGCCACGGCAG
ATTTGCGTACGAATTCATTCAATCTGCGAAGAACAAGGTCACGAGGAGTA
AGCCTGGTAAAGAAGCTGCGTACATTATTCAACTAAAACTACAACGTGGA
GAACAGGCGGCACTGGTTTCATCTGATGGCGTTCCACACGCGTACAATAT
CGAATCCGTCTACTACAATTCATCAGGCTTCCATAACCCCGTTAGAAGAC
GCGCGAGCACCAATCCATCACCGTCACATTGCACCATTCTACTGCGTGAA
CCTACCCTCCCGGTCCCTCGAGCGCAACACGACCATGAAAATGTGCAGGA
AGAAGTAAGGAAGAAACATGCGGCAGACACGGAAGATGCAGACTACCGGC
CGACGAAACGTGCCAAACGGGTTTTGGAAAGCAACAAGAAGAAGAAGGTT
GGAAAGCCTGCATTTAAAACCATTTCTGCTGCTCTAAAGGACAAGAGGCT
ATACAACTCGGTTGTGCAACGTGAACTACAAGCGGAGGAATATGAAAACG
GCGCCGATTCCGATGCCGAAAGCGAAAGTCGAGAGGAACGTAAATGGAGA
TTACGGGTGGTAGATGACGAAATTGAAGAATATGTAGATACCATTGCGGT
CGAAAAGCTGTTCATGAACCTGTGGAACCAATTCGTGAAAATGGAGCATC
CCGTCAAGTCTGACAGAGAAATTGCTCCAGCGTGTCTAGAATTCGTGCAG
AAGTACCGCAGAACTCTGATTCGATATAATCTTGAAGTCACATTTCTTCG
ACATCTTACCGAGTTTACGCGTATGGGTTTGCTCGACGCCGTTAGTGTTT
TCGACATATTCCAAGTACTGAGAAATCGCGATATGTCGGGACCATCAGGT
GGAGGTGATGAGCCAAAGTTCTTGTATGCGGAAAGACTCAAAAAGGAGGG
TCCGGAAGGAAAACGAATTCGATACGCTTGA
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Coding sequence (CDS) from alignment at tig00000908_pilon:53802..55132+

>Ggra3901.t1 ID=Ggra3901.t1|Name=Ggra3901.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000908_pilon:53802..55132+ (Gracilaria gracilis GNS1m male)
ATGCCTCATACTTCTTCTGTCGTAGCTTCAAAGGAACCACATCCTGAGCA
GAAGAACGTCCGAGAAGCGTTTCATGAAGCTCGTCGTTTATATGGTATCC
TAGCGTGGCGGTACCGCCATTCACGTCTTTTTCTTCCTCGCACGTTGCGG
AGAAGCCCTGAAAAATCTCAGAAATCCACCACATACCCGAGCGTCAAGTA
CGTCTCTAATGAGCCCTTTGTCACATGGAGCGAATACGTACCACAGTTGC
GATGTCTATGGTGTGGGGATATGTTTTATCGCTTTTCAAGCGGAACGGAG
CTAGTAAGCCATTTGGAAACATGCCACGGCAGATTTGCGTACGAATTCAT
TCAATCTGCGAAGAACAAGGTCACGAGGAGTAAGCCTGGTAAAGAAGCTG
CGTACATTATTCAACTAAAACTACAACGTGGAGAACAGGCGGCACTGGTT
TCATCTGATGGCGTTCCACACGCGTACAATATCGAATCCGTCTACTACAA
TTCATCAGGCTTCCATAACCCCGTTAGAAGACGCGCGAGCACCAATCCAT
CACCGTCACATTGCACCATTCTACTGCGTGAACCTACCCTCCCGGTCCCT
CGAGCGCAACACGACCATGAAAATGTGCAGGAAGAAGTAAGGAAGAAACA
TGCGGCAGACACGGAAGATGCAGACTACCGGCCGACGAAACGTGCCAAAC
GGGTTTTGGAAAGCAACAAGAAGAAGAAGGTTGGAAAGCCTGCATTTAAA
ACCATTTCTGCTGCTCTAAAGGACAAGAGGCTATACAACTCGGTTGTGCA
ACGTGAACTACAAGCGGAGGAATATGAAAACGGCGCCGATTCCGATGCCG
AAAGCGAAAGTCGAGAGGAACGTAAATGGAGATTACGGGTGGTAGATGAC
GAAATTGAAGAATATGTAGATACCATTGCGGTCGAAAAGCTGTTCATGAA
CCTGTGGAACCAATTCGTGAAAATGGAGCATCCCGTCAAGTCTGACAGAG
AAATTGCTCCAGCGTGTCTAGAATTCGTGCAGAAGTACCGCAGAACTCTG
ATTCGATATAATCTTGAAGTCACATTTCTTCGACATCTTACCGAGTTTAC
GCGTATGGGTTTGCTCGACGCCGTTAGTGTTTTCGACATATTCCAAGTAC
TGAGAAATCGCGATATGTCGGGACCATCAGGTGGAGGTGATGAGCCAAAG
TTCTTGTATGCGGAAAGACTCAAAAAGGAGGGTCCGGAAGGAAAACGAAT
TCGATACGCTTGA
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