Ggra3892.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3892.t1
Unique NameGgra3892.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:23681..24692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705949.1
Preferred nameclpP
PFAMsCLP_protease
Max annot lvl2759|Eukaryota
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009368,GO:0009536,GO:0009987,GO:0016787,GO:0017171,GO:0019538,GO:0030163,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051603,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue2.73e-115
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
EC3.4.21.92
Descriptionserine-type endopeptidase activity
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3892Ggra3892Gracilaria gracilis GNS1m malegenetig00000908_pilon 23681..24692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3892.t1Ggra3892.t1Gracilaria gracilis GNS1m malepolypeptidetig00000908_pilon 23681..24692 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3892.t1.start1Ggra3892.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000908_pilon 23681..23683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3892.t1.CDS1Ggra3892.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000908_pilon 23681..23893 +
Ggra3892.t1.CDS2Ggra3892.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000908_pilon 24013..24378 +
Ggra3892.t1.CDS3Ggra3892.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000908_pilon 24477..24692 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3892.t1.exon1Ggra3892.t1.exon1Gracilaria gracilis GNS1m maleexontig00000908_pilon 23681..23893 +
Ggra3892.t1.exon2Ggra3892.t1.exon2Gracilaria gracilis GNS1m maleexontig00000908_pilon 24013..24378 +
Ggra3892.t1.exon3Ggra3892.t1.exon3Gracilaria gracilis GNS1m maleexontig00000908_pilon 24477..24692 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3892.t1.intron1Ggra3892.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000908_pilon 23894..24012 +
Ggra3892.t1.intron2Ggra3892.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000908_pilon 24379..24476 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3892.t1.stop1Ggra3892.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000908_pilon 24690..24692 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3892.t1 ID=Ggra3892.t1|Name=Ggra3892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MFCSAAFAASAALPRASTFSPSASSSCAVHRQPSSFLSSSRPLSFFARNA
VPVVRSRSIGRWTMMPIGVPKVLFRVPGAPQADWVDIYNRLYRERIIFLG
QEIDDEIANQIIAVMLYLESEDNTKPIYLYINSPGGSVIAGMAIYDTMKH
IKSDVITINVGLAASMASFLLGGGEKGKRLALPHSRVMIHQPMGGAQGQA
SDIEVEAQQILRIRENLTHEYARMTGQKYEQLLQDMDRDNFMSAAQALDY
GLIDRIIEGTSQAI*
back to top

spliced messenger RNA

>Ggra3892.t1 ID=Ggra3892.t1|Name=Ggra3892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000908_pilon:23681..24692+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTGTTCAGCAGCCTTCGCCGCTTCGGCAGCTCTGCCGCGTGCTTC
CACCTTCTCGCCAAGCGCTTCTTCCAGCTGCGCAGTGCACAGACAGCCTT
CTTCGTTTCTTTCTTCTTCGCGCCCGCTCAGCTTTTTCGCCAGGAATGCT
GTACCTGTGGTGCGATCTCGTTCGATTGGGAGATGGACTATGATGCCCAT
CGGCGTTCCGAAAGTTCTTTTCCGTGTACCGGGTGCCCCGCAAGCGGATT
GGGTCGATATCTACAATCGATTGTATCGCGAGCGCATTATCTTTCTCGGA
CAGGAAATTGACGACGAGATTGCCAACCAAATTATTGCTGTCATGCTGTA
TCTGGAGTCGGAAGATAACACAAAGCCCATCTATCTGTACATCAACTCCC
CGGGAGGCTCCGTCATTGCAGGTATGGCAATATACGACACCATGAAGCAC
ATCAAGTCTGACGTGATCACCATCAACGTTGGACTGGCGGCTTCCATGGC
TTCGTTTTTGCTAGGGGGGGGTGAAAAGGGCAAGCGGTTGGCACTGCCCC
ATTCTCGAGTGATGATTCATCAACCGATGGGAGGTGCACAAGGGCAGGCG
TCAGATATTGAAGTTGAGGCGCAACAAATCTTGAGAATTCGCGAGAATTT
GACCCATGAGTACGCTCGCATGACTGGTCAGAAGTACGAACAATTGCTTC
AAGACATGGATCGAGATAACTTTATGAGTGCTGCTCAGGCATTAGACTAT
GGCTTGATTGATCGTATCATAGAAGGAACAAGTCAAGCGATATAA
back to top

protein sequence of Ggra3892.t1

>Ggra3892.t1 ID=Ggra3892.t1|Name=Ggra3892.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MFCSAAFAASAALPRASTFSPSASSSCAVHRQPSSFLSSSRPLSFFARNA
VPVVRSRSIGRWTMMPIGVPKVLFRVPGAPQADWVDIYNRLYRERIIFLG
QEIDDEIANQIIAVMLYLESEDNTKPIYLYINSPGGSVIAGMAIYDTMKH
IKSDVITINVGLAASMASFLLGGGEKGKRLALPHSRVMIHQPMGGAQGQA
SDIEVEAQQILRIRENLTHEYARMTGQKYEQLLQDMDRDNFMSAAQALDY
GLIDRIIEGTSQAI*
back to top

mRNA from alignment at tig00000908_pilon:23681..24692+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3892.t1 ID=Ggra3892.t1|Name=Ggra3892.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1012bp|location=Sequence derived from alignment at tig00000908_pilon:23681..24692+ (Gracilaria gracilis GNS1m male)
ATGTTTTGTTCAGCAGCCTTCGCCGCTTCGGCAGCTCTGCCGCGTGCTTC
CACCTTCTCGCCAAGCGCTTCTTCCAGCTGCGCAGTGCACAGACAGCCTT
CTTCGTTTCTTTCTTCTTCGCGCCCGCTCAGCTTTTTCGCCAGGAATGCT
GTACCTGTGGTGCGATCTCGTTCGATTGGGAGATGGACTATGATGCCCAT
CGGCGTTCCGAAAGTACGTTCTCCCCATATCATTCGATGTCTGTAACCAT
GTGATTCGCGTTCTTTCTTTTTTGTTACTCACAAAACTTTTGGATGTTTA
TATATACATATCCGATATGGGTTAAAAAATAGGTTCTTTTCCGTGTACCG
GGTGCCCCGCAAGCGGATTGGGTCGATATCTACAATCGATTGTATCGCGA
GCGCATTATCTTTCTCGGACAGGAAATTGACGACGAGATTGCCAACCAAA
TTATTGCTGTCATGCTGTATCTGGAGTCGGAAGATAACACAAAGCCCATC
TATCTGTACATCAACTCCCCGGGAGGCTCCGTCATTGCAGGTATGGCAAT
ATACGACACCATGAAGCACATCAAGTCTGACGTGATCACCATCAACGTTG
GACTGGCGGCTTCCATGGCTTCGTTTTTGCTAGGGGGGGGTGAAAAGGGC
AAGCGGTTGGCACTGCCCCATTCTCGAGTGATGATTCATCAACCGATGGT
ATGTTACGTAGTTCCTTGTTTTGTACATTTGGGCATGGCCCGTTATTTTC
CTGACTGACAAAGAGTGATTCACGTGTGATTTTTGGATTGATGTAGGGAG
GTGCACAAGGGCAGGCGTCAGATATTGAAGTTGAGGCGCAACAAATCTTG
AGAATTCGCGAGAATTTGACCCATGAGTACGCTCGCATGACTGGTCAGAA
GTACGAACAATTGCTTCAAGACATGGATCGAGATAACTTTATGAGTGCTG
CTCAGGCATTAGACTATGGCTTGATTGATCGTATCATAGAAGGAACAAGT
CAAGCGATATAA
back to top

Coding sequence (CDS) from alignment at tig00000908_pilon:23681..24692+

>Ggra3892.t1 ID=Ggra3892.t1|Name=Ggra3892.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000908_pilon:23681..24692+ (Gracilaria gracilis GNS1m male)
ATGTTTTGTTCAGCAGCCTTCGCCGCTTCGGCAGCTCTGCCGCGTGCTTC
CACCTTCTCGCCAAGCGCTTCTTCCAGCTGCGCAGTGCACAGACAGCCTT
CTTCGTTTCTTTCTTCTTCGCGCCCGCTCAGCTTTTTCGCCAGGAATGCT
GTACCTGTGGTGCGATCTCGTTCGATTGGGAGATGGACTATGATGCCCAT
CGGCGTTCCGAAAGTTCTTTTCCGTGTACCGGGTGCCCCGCAAGCGGATT
GGGTCGATATCTACAATCGATTGTATCGCGAGCGCATTATCTTTCTCGGA
CAGGAAATTGACGACGAGATTGCCAACCAAATTATTGCTGTCATGCTGTA
TCTGGAGTCGGAAGATAACACAAAGCCCATCTATCTGTACATCAACTCCC
CGGGAGGCTCCGTCATTGCAGGTATGGCAATATACGACACCATGAAGCAC
ATCAAGTCTGACGTGATCACCATCAACGTTGGACTGGCGGCTTCCATGGC
TTCGTTTTTGCTAGGGGGGGGTGAAAAGGGCAAGCGGTTGGCACTGCCCC
ATTCTCGAGTGATGATTCATCAACCGATGGGAGGTGCACAAGGGCAGGCG
TCAGATATTGAAGTTGAGGCGCAACAAATCTTGAGAATTCGCGAGAATTT
GACCCATGAGTACGCTCGCATGACTGGTCAGAAGTACGAACAATTGCTTC
AAGACATGGATCGAGATAACTTTATGAGTGCTGCTCAGGCATTAGACTAT
GGCTTGATTGATCGTATCATAGAAGGAACAAGTCAAGCGATATAA
back to top