Ggra3889.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3889.t1
Unique Name	Ggra3889.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	727

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000908_pilon	contig	tig00000908_pilon:14528..16708 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118161.KB235922_gene1664
PFAMs	Big_5,GSDH,Malectin,TIG
Max annot lvl	1117\|Cyanobacteria
Evalue	1.46e-51
EggNOG OGs	COG2133@1\|root,COG2982@1\|root,COG3210@1\|root,COG2133@2\|Bacteria,COG2982@2\|Bacteria,COG3210@2\|Bacteria,1G17Y@1117\|Cyanobacteria
Description	Glucose / Sorbosone dehydrogenase
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3889	Ggra3889	Gracilaria gracilis GNS1m male	gene	tig00000908_pilon 14528..16708 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3889.t1.stop1	Ggra3889.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000908_pilon 14528..14530 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3889.t1.CDS1	Ggra3889.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000908_pilon 14528..16708 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3889.t1.exon1	Ggra3889.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000908_pilon 14528..16708 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3889.t1.start1	Ggra3889.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000908_pilon 16706..16708 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3889.t1	Ggra3889.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000908_pilon 14528..16708 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000908_pilon:14528..16708-
coding sequence from alignment at tig00000908_pilon:14528..16708-

mRNA sequence

>Ggra3889.t1 ID=Ggra3889.t1|Name=Ggra3889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=727bp
MRLNYRYCILLYYLLLFLLPVTCVKFQDPIEALDHQAHAKPGGPYLSVDW
NSDGMNAVTLDATQSHTHYFDHGPPPTSGSIVKYQWFSINSGAKILETKS
PYLSANFFLGITILKLIVTDSTGDEASAYTYVQVRKPHPGENLKPYIASI
HPQSGGTHGGTVVTVKGVGFYNNPHVYFADNLIQPHIISDAEINFRVPSV
KEPQSVNVYVTTGFGTSAQDVQFTYVASHESPIKFRAAYVKAPDGSEYNL
AQLTTFKLGPDTRYYAGSLNGFVHVLDIDDSQTVRASCASDNAGDGRSIL
GLGFHPREHESLRVYISTSTLFWRSKDKNSDWDNGRIEIWTTEESECLSF
ERNLVTGLPVSANDHAVNNLVFTNDGALLVAIGGSTNAGVHTDGDKIGGI
PESPLSGAILRFDLNVIDFDGNIKYSGREDPGTARVISGTVEVFSTGLRN
VYGLARHSNGGIYGVDNGPNNGFGPIATGCNTAGRQEEFQDKLLHIAEGS
YYGHPNWNRARDDPRQCTFVRGDEEAAEGYSKPMAILESSTNGIVEYTAN
TFNSRLRGQLVLSKLSWRKRGSLKLARLDGIGGLAEQPYELHNDSGLSVE
VGLRGELFMPKVKQSRILAMIPVEPEEESVRIITVTPRRGVTSGGNFVTI
NGAGLDESVRIYFGGIECTNYKDYASDGRSVQCRVPNFQGGSKIVSVVGM
KGLLQTTPSGQGEYEYMDDPVEVYLL*

spliced messenger RNA

>Ggra3889.t1 ID=Ggra3889.t1|Name=Ggra3889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2181bp|location=Sequence derived from alignment at tig00000908_pilon:14528..16708- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTCAACTACCGCTACTGCATCCTTCTCTATTATCTTCTTCTTTT
CCTTTTACCAGTAACATGTGTAAAATTTCAAGACCCTATCGAAGCTCTAG
ACCACCAAGCTCACGCCAAACCAGGCGGGCCGTATCTCTCCGTCGACTGG
AATAGTGATGGAATGAATGCAGTTACACTCGACGCAACCCAATCCCACAC
CCATTACTTTGACCATGGACCTCCGCCCACAAGTGGCAGTATCGTCAAGT
ATCAGTGGTTTAGTATTAACTCTGGCGCAAAGATCCTAGAAACTAAATCT
CCCTACCTCTCAGCCAATTTCTTCCTCGGAATTACCATCCTCAAACTCAT
CGTTACGGACAGTACTGGTGATGAAGCAAGTGCGTATACTTACGTTCAAG
TACGTAAACCTCACCCCGGGGAAAATTTGAAGCCTTACATTGCATCTATT
CATCCCCAAAGCGGCGGCACTCATGGCGGTACAGTCGTTACCGTTAAAGG
GGTTGGGTTCTATAATAATCCTCATGTTTACTTTGCTGACAATCTTATTC
AACCGCATATCATTAGTGATGCCGAGATTAATTTCCGCGTCCCCTCTGTC
AAAGAACCTCAATCTGTAAATGTTTATGTCACAACAGGATTTGGTACAAG
CGCCCAGGACGTTCAATTTACTTACGTTGCCTCTCACGAAAGTCCCATCA
AGTTCCGTGCTGCTTACGTTAAGGCCCCCGATGGCAGTGAATATAACCTT
GCACAGCTCACAACCTTCAAGCTTGGACCGGATACTCGATATTACGCAGG
CTCGTTAAACGGCTTCGTTCACGTTCTAGACATAGACGACTCGCAGACTG
TGCGCGCTTCTTGTGCTTCTGATAATGCTGGAGATGGACGTTCAATACTC
GGTTTGGGCTTCCATCCGCGGGAACATGAGTCTTTGCGAGTGTACATCTC
GACATCTACGTTGTTCTGGCGTTCAAAGGACAAGAATTCAGATTGGGATA
ACGGAAGGATTGAAATCTGGACAACAGAGGAAAGTGAATGCTTATCTTTT
GAACGGAACCTCGTGACAGGGTTGCCAGTATCAGCAAATGATCACGCAGT
GAACAATTTGGTCTTCACAAACGATGGAGCGTTGCTTGTGGCGATAGGAG
GCTCGACTAATGCTGGTGTTCACACTGACGGTGATAAGATTGGAGGCATA
CCTGAATCTCCGTTGTCTGGAGCTATACTGCGCTTTGATCTTAACGTTAT
AGATTTTGATGGAAACATAAAGTACTCCGGGCGAGAAGACCCTGGTACTG
CTCGTGTTATCTCTGGTACGGTTGAGGTGTTTTCCACGGGACTTCGGAAT
GTATATGGGCTGGCTAGGCATTCGAATGGAGGTATCTACGGTGTGGACAA
TGGACCAAACAACGGATTTGGTCCTATTGCTACAGGATGCAATACAGCTG
GCAGGCAAGAGGAATTCCAAGACAAGTTACTGCACATCGCGGAAGGATCG
TACTATGGACATCCAAATTGGAACCGCGCCAGAGACGACCCCCGCCAGTG
TACGTTTGTGCGAGGTGACGAAGAGGCTGCTGAAGGATATTCGAAGCCGA
TGGCTATATTGGAAAGCTCAACAAATGGGATCGTGGAATATACGGCCAAT
ACATTCAATTCACGTTTGCGTGGACAACTTGTGCTCAGTAAGCTTTCATG
GCGAAAAAGAGGAAGTCTAAAACTAGCCCGATTGGACGGCATAGGTGGTT
TGGCGGAACAACCTTATGAGTTACACAACGACTCTGGGCTGTCCGTTGAA
GTTGGGCTGAGAGGAGAACTATTTATGCCGAAGGTGAAACAGTCGAGAAT
TCTCGCAATGATTCCAGTTGAACCGGAAGAGGAGAGCGTACGAATCATAA
CCGTAACGCCCAGAAGAGGAGTAACAAGCGGAGGCAATTTTGTGACAATT
AATGGCGCAGGCCTCGATGAGAGTGTGAGAATTTACTTTGGAGGTATTGA
GTGCACGAATTACAAAGACTATGCTTCTGACGGGAGAAGTGTGCAATGCA
GAGTACCTAACTTCCAGGGAGGCTCGAAAATAGTTTCTGTTGTTGGGATG
AAAGGGTTGCTTCAGACGACACCATCAGGCCAAGGTGAGTATGAATACAT
GGATGACCCTGTCGAGGTGTATTTGCTTTAA

protein sequence of Ggra3889.t1

>Ggra3889.t1 ID=Ggra3889.t1|Name=Ggra3889.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=727bp
MRLNYRYCILLYYLLLFLLPVTCVKFQDPIEALDHQAHAKPGGPYLSVDW
NSDGMNAVTLDATQSHTHYFDHGPPPTSGSIVKYQWFSINSGAKILETKS
PYLSANFFLGITILKLIVTDSTGDEASAYTYVQVRKPHPGENLKPYIASI
HPQSGGTHGGTVVTVKGVGFYNNPHVYFADNLIQPHIISDAEINFRVPSV
KEPQSVNVYVTTGFGTSAQDVQFTYVASHESPIKFRAAYVKAPDGSEYNL
AQLTTFKLGPDTRYYAGSLNGFVHVLDIDDSQTVRASCASDNAGDGRSIL
GLGFHPREHESLRVYISTSTLFWRSKDKNSDWDNGRIEIWTTEESECLSF
ERNLVTGLPVSANDHAVNNLVFTNDGALLVAIGGSTNAGVHTDGDKIGGI
PESPLSGAILRFDLNVIDFDGNIKYSGREDPGTARVISGTVEVFSTGLRN
VYGLARHSNGGIYGVDNGPNNGFGPIATGCNTAGRQEEFQDKLLHIAEGS
YYGHPNWNRARDDPRQCTFVRGDEEAAEGYSKPMAILESSTNGIVEYTAN
TFNSRLRGQLVLSKLSWRKRGSLKLARLDGIGGLAEQPYELHNDSGLSVE
VGLRGELFMPKVKQSRILAMIPVEPEEESVRIITVTPRRGVTSGGNFVTI
NGAGLDESVRIYFGGIECTNYKDYASDGRSVQCRVPNFQGGSKIVSVVGM
KGLLQTTPSGQGEYEYMDDPVEVYLL*

mRNA from alignment at tig00000908_pilon:14528..16708-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3889.t1 ID=Ggra3889.t1|Name=Ggra3889.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2181bp|location=Sequence derived from alignment at tig00000908_pilon:14528..16708- (Gracilaria gracilis GNS1m male)
ATGAGACTCAACTACCGCTACTGCATCCTTCTCTATTATCTTCTTCTTTT
CCTTTTACCAGTAACATGTGTAAAATTTCAAGACCCTATCGAAGCTCTAG
ACCACCAAGCTCACGCCAAACCAGGCGGGCCGTATCTCTCCGTCGACTGG
AATAGTGATGGAATGAATGCAGTTACACTCGACGCAACCCAATCCCACAC
CCATTACTTTGACCATGGACCTCCGCCCACAAGTGGCAGTATCGTCAAGT
ATCAGTGGTTTAGTATTAACTCTGGCGCAAAGATCCTAGAAACTAAATCT
CCCTACCTCTCAGCCAATTTCTTCCTCGGAATTACCATCCTCAAACTCAT
CGTTACGGACAGTACTGGTGATGAAGCAAGTGCGTATACTTACGTTCAAG
TACGTAAACCTCACCCCGGGGAAAATTTGAAGCCTTACATTGCATCTATT
CATCCCCAAAGCGGCGGCACTCATGGCGGTACAGTCGTTACCGTTAAAGG
GGTTGGGTTCTATAATAATCCTCATGTTTACTTTGCTGACAATCTTATTC
AACCGCATATCATTAGTGATGCCGAGATTAATTTCCGCGTCCCCTCTGTC
AAAGAACCTCAATCTGTAAATGTTTATGTCACAACAGGATTTGGTACAAG
CGCCCAGGACGTTCAATTTACTTACGTTGCCTCTCACGAAAGTCCCATCA
AGTTCCGTGCTGCTTACGTTAAGGCCCCCGATGGCAGTGAATATAACCTT
GCACAGCTCACAACCTTCAAGCTTGGACCGGATACTCGATATTACGCAGG
CTCGTTAAACGGCTTCGTTCACGTTCTAGACATAGACGACTCGCAGACTG
TGCGCGCTTCTTGTGCTTCTGATAATGCTGGAGATGGACGTTCAATACTC
GGTTTGGGCTTCCATCCGCGGGAACATGAGTCTTTGCGAGTGTACATCTC
GACATCTACGTTGTTCTGGCGTTCAAAGGACAAGAATTCAGATTGGGATA
ACGGAAGGATTGAAATCTGGACAACAGAGGAAAGTGAATGCTTATCTTTT
GAACGGAACCTCGTGACAGGGTTGCCAGTATCAGCAAATGATCACGCAGT
GAACAATTTGGTCTTCACAAACGATGGAGCGTTGCTTGTGGCGATAGGAG
GCTCGACTAATGCTGGTGTTCACACTGACGGTGATAAGATTGGAGGCATA
CCTGAATCTCCGTTGTCTGGAGCTATACTGCGCTTTGATCTTAACGTTAT
AGATTTTGATGGAAACATAAAGTACTCCGGGCGAGAAGACCCTGGTACTG
CTCGTGTTATCTCTGGTACGGTTGAGGTGTTTTCCACGGGACTTCGGAAT
GTATATGGGCTGGCTAGGCATTCGAATGGAGGTATCTACGGTGTGGACAA
TGGACCAAACAACGGATTTGGTCCTATTGCTACAGGATGCAATACAGCTG
GCAGGCAAGAGGAATTCCAAGACAAGTTACTGCACATCGCGGAAGGATCG
TACTATGGACATCCAAATTGGAACCGCGCCAGAGACGACCCCCGCCAGTG
TACGTTTGTGCGAGGTGACGAAGAGGCTGCTGAAGGATATTCGAAGCCGA
TGGCTATATTGGAAAGCTCAACAAATGGGATCGTGGAATATACGGCCAAT
ACATTCAATTCACGTTTGCGTGGACAACTTGTGCTCAGTAAGCTTTCATG
GCGAAAAAGAGGAAGTCTAAAACTAGCCCGATTGGACGGCATAGGTGGTT
TGGCGGAACAACCTTATGAGTTACACAACGACTCTGGGCTGTCCGTTGAA
GTTGGGCTGAGAGGAGAACTATTTATGCCGAAGGTGAAACAGTCGAGAAT
TCTCGCAATGATTCCAGTTGAACCGGAAGAGGAGAGCGTACGAATCATAA
CCGTAACGCCCAGAAGAGGAGTAACAAGCGGAGGCAATTTTGTGACAATT
AATGGCGCAGGCCTCGATGAGAGTGTGAGAATTTACTTTGGAGGTATTGA
GTGCACGAATTACAAAGACTATGCTTCTGACGGGAGAAGTGTGCAATGCA
GAGTACCTAACTTCCAGGGAGGCTCGAAAATAGTTTCTGTTGTTGGGATG
AAAGGGTTGCTTCAGACGACACCATCAGGCCAAGGTGAGTATGAATACAT
GGATGACCCTGTCGAGGTGTATTTGCTTTAA

Coding sequence (CDS) from alignment at tig00000908_pilon:14528..16708-

>Ggra3889.t1 ID=Ggra3889.t1|Name=Ggra3889.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2181bp|location=Sequence derived from alignment at tig00000908_pilon:14528..16708- (Gracilaria gracilis GNS1m male)
ATGAGACTCAACTACCGCTACTGCATCCTTCTCTATTATCTTCTTCTTTT
CCTTTTACCAGTAACATGTGTAAAATTTCAAGACCCTATCGAAGCTCTAG
ACCACCAAGCTCACGCCAAACCAGGCGGGCCGTATCTCTCCGTCGACTGG
AATAGTGATGGAATGAATGCAGTTACACTCGACGCAACCCAATCCCACAC
CCATTACTTTGACCATGGACCTCCGCCCACAAGTGGCAGTATCGTCAAGT
ATCAGTGGTTTAGTATTAACTCTGGCGCAAAGATCCTAGAAACTAAATCT
CCCTACCTCTCAGCCAATTTCTTCCTCGGAATTACCATCCTCAAACTCAT
CGTTACGGACAGTACTGGTGATGAAGCAAGTGCGTATACTTACGTTCAAG
TACGTAAACCTCACCCCGGGGAAAATTTGAAGCCTTACATTGCATCTATT
CATCCCCAAAGCGGCGGCACTCATGGCGGTACAGTCGTTACCGTTAAAGG
GGTTGGGTTCTATAATAATCCTCATGTTTACTTTGCTGACAATCTTATTC
AACCGCATATCATTAGTGATGCCGAGATTAATTTCCGCGTCCCCTCTGTC
AAAGAACCTCAATCTGTAAATGTTTATGTCACAACAGGATTTGGTACAAG
CGCCCAGGACGTTCAATTTACTTACGTTGCCTCTCACGAAAGTCCCATCA
AGTTCCGTGCTGCTTACGTTAAGGCCCCCGATGGCAGTGAATATAACCTT
GCACAGCTCACAACCTTCAAGCTTGGACCGGATACTCGATATTACGCAGG
CTCGTTAAACGGCTTCGTTCACGTTCTAGACATAGACGACTCGCAGACTG
TGCGCGCTTCTTGTGCTTCTGATAATGCTGGAGATGGACGTTCAATACTC
GGTTTGGGCTTCCATCCGCGGGAACATGAGTCTTTGCGAGTGTACATCTC
GACATCTACGTTGTTCTGGCGTTCAAAGGACAAGAATTCAGATTGGGATA
ACGGAAGGATTGAAATCTGGACAACAGAGGAAAGTGAATGCTTATCTTTT
GAACGGAACCTCGTGACAGGGTTGCCAGTATCAGCAAATGATCACGCAGT
GAACAATTTGGTCTTCACAAACGATGGAGCGTTGCTTGTGGCGATAGGAG
GCTCGACTAATGCTGGTGTTCACACTGACGGTGATAAGATTGGAGGCATA
CCTGAATCTCCGTTGTCTGGAGCTATACTGCGCTTTGATCTTAACGTTAT
AGATTTTGATGGAAACATAAAGTACTCCGGGCGAGAAGACCCTGGTACTG
CTCGTGTTATCTCTGGTACGGTTGAGGTGTTTTCCACGGGACTTCGGAAT
GTATATGGGCTGGCTAGGCATTCGAATGGAGGTATCTACGGTGTGGACAA
TGGACCAAACAACGGATTTGGTCCTATTGCTACAGGATGCAATACAGCTG
GCAGGCAAGAGGAATTCCAAGACAAGTTACTGCACATCGCGGAAGGATCG
TACTATGGACATCCAAATTGGAACCGCGCCAGAGACGACCCCCGCCAGTG
TACGTTTGTGCGAGGTGACGAAGAGGCTGCTGAAGGATATTCGAAGCCGA
TGGCTATATTGGAAAGCTCAACAAATGGGATCGTGGAATATACGGCCAAT
ACATTCAATTCACGTTTGCGTGGACAACTTGTGCTCAGTAAGCTTTCATG
GCGAAAAAGAGGAAGTCTAAAACTAGCCCGATTGGACGGCATAGGTGGTT
TGGCGGAACAACCTTATGAGTTACACAACGACTCTGGGCTGTCCGTTGAA
GTTGGGCTGAGAGGAGAACTATTTATGCCGAAGGTGAAACAGTCGAGAAT
TCTCGCAATGATTCCAGTTGAACCGGAAGAGGAGAGCGTACGAATCATAA
CCGTAACGCCCAGAAGAGGAGTAACAAGCGGAGGCAATTTTGTGACAATT
AATGGCGCAGGCCTCGATGAGAGTGTGAGAATTTACTTTGGAGGTATTGA
GTGCACGAATTACAAAGACTATGCTTCTGACGGGAGAAGTGTGCAATGCA
GAGTACCTAACTTCCAGGGAGGCTCGAAAATAGTTTCTGTTGTTGGGATG
AAAGGGTTGCTTCAGACGACACCATCAGGCCAAGGTGAGTATGAATACAT
GGATGACCCTGTCGAGGTGTATTTGCTTTAA