Ggra3875.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3875.t1
Unique NameGgra3875.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2309876..2310376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3875Ggra3875Gracilaria gracilis GNS1m malegenetig00000850_pilon 2309876..2310376 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3875.t1.start1Ggra3875.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2309876..2309878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3875.t1.CDS1Ggra3875.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2309876..2310376 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3875.t1.exon1Ggra3875.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2309876..2310376 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3875.t1.stop1Ggra3875.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2310374..2310376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3875.t1Ggra3875.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2309876..2310376 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3875.t1 ID=Ggra3875.t1|Name=Ggra3875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=167bp
MKHSTFLYHAALLTVSLSICSTYAIVSLPFAMGPTPEELATLEFLTCSSS
LCLANDTRSFQCSNSAIAAFPVPDNSATVIVLLTAPPADNNLANLQSRYM
AVVPRAALATGMLSFIAWRPTDADPAQTECLRLGPIGQPFGTCCGACSQL
NGASSSLSCCRPCIAS*
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spliced messenger RNA

>Ggra3875.t1 ID=Ggra3875.t1|Name=Ggra3875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000850_pilon:2309876..2310376+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCACAGCACGTTCCTGTACCACGCGGCGCTGCTAACGGTATCGCT
GAGCATATGCTCAACGTACGCCATCGTGTCGCTGCCATTCGCCATGGGCC
CCACGCCCGAGGAGCTAGCCACGCTGGAATTCCTCACCTGCTCGTCCAGC
CTGTGTCTAGCCAACGACACGCGCTCGTTCCAATGCAGCAACTCTGCAAT
CGCGGCGTTCCCGGTGCCGGACAACTCTGCGACGGTGATCGTGCTACTGA
CGGCGCCGCCCGCCGACAACAACCTGGCGAACCTGCAGTCGCGCTACATG
GCGGTGGTGCCGCGCGCCGCGCTGGCGACCGGAATGCTGTCGTTCATCGC
GTGGCGCCCCACCGACGCCGACCCCGCGCAGACCGAGTGTCTGCGGCTGG
GCCCGATCGGGCAGCCGTTTGGCACGTGCTGCGGCGCGTGTTCGCAGCTC
AACGGCGCGTCTAGCAGCCTGTCGTGCTGCCGCCCGTGCATCGCTTCGTG
A
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protein sequence of Ggra3875.t1

>Ggra3875.t1 ID=Ggra3875.t1|Name=Ggra3875.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MKHSTFLYHAALLTVSLSICSTYAIVSLPFAMGPTPEELATLEFLTCSSS
LCLANDTRSFQCSNSAIAAFPVPDNSATVIVLLTAPPADNNLANLQSRYM
AVVPRAALATGMLSFIAWRPTDADPAQTECLRLGPIGQPFGTCCGACSQL
NGASSSLSCCRPCIAS*
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mRNA from alignment at tig00000850_pilon:2309876..2310376+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3875.t1 ID=Ggra3875.t1|Name=Ggra3875.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000850_pilon:2309876..2310376+ (Gracilaria gracilis GNS1m male)
ATGAAGCACAGCACGTTCCTGTACCACGCGGCGCTGCTAACGGTATCGCT
GAGCATATGCTCAACGTACGCCATCGTGTCGCTGCCATTCGCCATGGGCC
CCACGCCCGAGGAGCTAGCCACGCTGGAATTCCTCACCTGCTCGTCCAGC
CTGTGTCTAGCCAACGACACGCGCTCGTTCCAATGCAGCAACTCTGCAAT
CGCGGCGTTCCCGGTGCCGGACAACTCTGCGACGGTGATCGTGCTACTGA
CGGCGCCGCCCGCCGACAACAACCTGGCGAACCTGCAGTCGCGCTACATG
GCGGTGGTGCCGCGCGCCGCGCTGGCGACCGGAATGCTGTCGTTCATCGC
GTGGCGCCCCACCGACGCCGACCCCGCGCAGACCGAGTGTCTGCGGCTGG
GCCCGATCGGGCAGCCGTTTGGCACGTGCTGCGGCGCGTGTTCGCAGCTC
AACGGCGCGTCTAGCAGCCTGTCGTGCTGCCGCCCGTGCATCGCTTCGTG
A
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Coding sequence (CDS) from alignment at tig00000850_pilon:2309876..2310376+

>Ggra3875.t1 ID=Ggra3875.t1|Name=Ggra3875.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00000850_pilon:2309876..2310376+ (Gracilaria gracilis GNS1m male)
ATGAAGCACAGCACGTTCCTGTACCACGCGGCGCTGCTAACGGTATCGCT
GAGCATATGCTCAACGTACGCCATCGTGTCGCTGCCATTCGCCATGGGCC
CCACGCCCGAGGAGCTAGCCACGCTGGAATTCCTCACCTGCTCGTCCAGC
CTGTGTCTAGCCAACGACACGCGCTCGTTCCAATGCAGCAACTCTGCAAT
CGCGGCGTTCCCGGTGCCGGACAACTCTGCGACGGTGATCGTGCTACTGA
CGGCGCCGCCCGCCGACAACAACCTGGCGAACCTGCAGTCGCGCTACATG
GCGGTGGTGCCGCGCGCCGCGCTGGCGACCGGAATGCTGTCGTTCATCGC
GTGGCGCCCCACCGACGCCGACCCCGCGCAGACCGAGTGTCTGCGGCTGG
GCCCGATCGGGCAGCCGTTTGGCACGTGCTGCGGCGCGTGTTCGCAGCTC
AACGGCGCGTCTAGCAGCCTGTCGTGCTGCCGCCCGTGCATCGCTTCGTG
A
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