Ggra3874.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3874.t1
Unique NameGgra3874.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2290874..2291815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3874Ggra3874Gracilaria gracilis GNS1m malegenetig00000850_pilon 2290874..2291815 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3874.t1.start1Ggra3874.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2290874..2290876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3874.t1.CDS1Ggra3874.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2290874..2291815 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3874.t1.exon1Ggra3874.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2290874..2291815 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3874.t1.stop1Ggra3874.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2291813..2291815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3874.t1Ggra3874.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2290874..2291815 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3874.t1 ID=Ggra3874.t1|Name=Ggra3874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MKLSTYLDCLCDCIPRRRRAVHLPASPSARNRFDAPPSPSPSAPPLPGAG
AGAGAGAGAGAGAGAGAGAGASAGNVAALAEHRRVTAAFMRADEAPSQPQ
PPPPPSPSPHCGCFQFMPPQPLCEAPCIQPYFPWKAPSNQSFFASSVLHA
ASCMGFEFGDGTLLPFVPVRQVTLHVRNEQMLSHARFKRRSARSLAKLAT
IRLSLSAASYTQLVHSAQRAFRNSTSAALLLPPIQQKAQRVTVQVHLNPR
ASDVALQEDCMCTKLIAHYSTLQSADLDGRALLMFCVQHRSSTTSSPLEI
RLHRFQLLDHVAL*
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spliced messenger RNA

>Ggra3874.t1 ID=Ggra3874.t1|Name=Ggra3874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000850_pilon:2290874..2291815+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCTCCACGTACCTGGACTGCCTGTGCGACTGCATTCCGCGCCG
TCGCCGCGCCGTGCACCTGCCGGCCTCGCCCTCCGCGCGCAACCGCTTCG
ACGCGCCGCCGTCGCCGTCGCCGTCGGCGCCGCCGCTGCCCGGCGCGGGC
GCCGGCGCGGGCGCCGGCGCGGGCGCGGGTGCGGGCGCGGGCGCGGGTGC
GGGTGCGGGCGCGAGCGCGGGCAACGTTGCGGCGCTTGCGGAGCATCGCC
GCGTCACGGCGGCCTTCATGCGCGCGGATGAGGcgccgtcgcagccgcag
ccgcctccgccgccgtcgccCAGCCCGCACTGCGGCTGCTTTCAGTTCAT
GCCGCCGCAGCCGCTGTGCGAGGCGCCGTGCATCCAGCCGTACTTTCCGT
GGAAAGCGCCGTCCAACCAGTCGTTCTTCGCCAGCAGCGTGCTGCACGCC
GCCAGCTGCATGGGCTTTGAGTTTGGCGACGGCACTTTGTTGCCGTTCGT
GCCCGTGCGTCAGGTGACGCTGCATGTACGCAACGAGCAGATGCTATCGC
ACGCTCGCTTCAAACGACGCTCGGCTAGGTCACTGGCGAAGCTCGCTACC
ATTCGACTGTCGCTGTCCGCTGCGTCGTACACGCAGCTTGTGCATAGCGC
GCAGCGTGCCTTTCGTAACAGCACGTCGGCGGCGTTGCTGTTGCCTCCGA
TTCAACAAAAGGCTCAGCGCGTCACCGTGCAGGTGCACCTGAACCCACGT
GCGTCGGACGTTGCGCTGCAGGAGGATTGTATGTGTACTAAACTCATTGC
TCACTACTCTACGCTGCAGAGCGCCGATCTTGATGGTCGCGCTCTGCTCA
TGTTCTGTGTTCAACACCGCTCCAGTACCACGTCTTCGCCGCTTGAGATT
CGACTGCATCGCTTTCAGTTGCTTGATCATGTAGCTTTGTAA
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protein sequence of Ggra3874.t1

>Ggra3874.t1 ID=Ggra3874.t1|Name=Ggra3874.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MKLSTYLDCLCDCIPRRRRAVHLPASPSARNRFDAPPSPSPSAPPLPGAG
AGAGAGAGAGAGAGAGAGAGASAGNVAALAEHRRVTAAFMRADEAPSQPQ
PPPPPSPSPHCGCFQFMPPQPLCEAPCIQPYFPWKAPSNQSFFASSVLHA
ASCMGFEFGDGTLLPFVPVRQVTLHVRNEQMLSHARFKRRSARSLAKLAT
IRLSLSAASYTQLVHSAQRAFRNSTSAALLLPPIQQKAQRVTVQVHLNPR
ASDVALQEDCMCTKLIAHYSTLQSADLDGRALLMFCVQHRSSTTSSPLEI
RLHRFQLLDHVAL*
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mRNA from alignment at tig00000850_pilon:2290874..2291815+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3874.t1 ID=Ggra3874.t1|Name=Ggra3874.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000850_pilon:2290874..2291815+ (Gracilaria gracilis GNS1m male)
ATGAAGCTCTCCACGTACCTGGACTGCCTGTGCGACTGCATTCCGCGCCG
TCGCCGCGCCGTGCACCTGCCGGCCTCGCCCTCCGCGCGCAACCGCTTCG
ACGCGCCGCCGTCGCCGTCGCCGTCGGCGCCGCCGCTGCCCGGCGCGGGC
GCCGGCGCGGGCGCCGGCGCGGGCGCGGGTGCGGGCGCGGGCGCGGGTGC
GGGTGCGGGCGCGAGCGCGGGCAACGTTGCGGCGCTTGCGGAGCATCGCC
GCGTCACGGCGGCCTTCATGCGCGCGGATGAGGcgccgtcgcagccgcag
ccgcctccgccgccgtcgccCAGCCCGCACTGCGGCTGCTTTCAGTTCAT
GCCGCCGCAGCCGCTGTGCGAGGCGCCGTGCATCCAGCCGTACTTTCCGT
GGAAAGCGCCGTCCAACCAGTCGTTCTTCGCCAGCAGCGTGCTGCACGCC
GCCAGCTGCATGGGCTTTGAGTTTGGCGACGGCACTTTGTTGCCGTTCGT
GCCCGTGCGTCAGGTGACGCTGCATGTACGCAACGAGCAGATGCTATCGC
ACGCTCGCTTCAAACGACGCTCGGCTAGGTCACTGGCGAAGCTCGCTACC
ATTCGACTGTCGCTGTCCGCTGCGTCGTACACGCAGCTTGTGCATAGCGC
GCAGCGTGCCTTTCGTAACAGCACGTCGGCGGCGTTGCTGTTGCCTCCGA
TTCAACAAAAGGCTCAGCGCGTCACCGTGCAGGTGCACCTGAACCCACGT
GCGTCGGACGTTGCGCTGCAGGAGGATTGTATGTGTACTAAACTCATTGC
TCACTACTCTACGCTGCAGAGCGCCGATCTTGATGGTCGCGCTCTGCTCA
TGTTCTGTGTTCAACACCGCTCCAGTACCACGTCTTCGCCGCTTGAGATT
CGACTGCATCGCTTTCAGTTGCTTGATCATGTAGCTTTGTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2290874..2291815+

>Ggra3874.t1 ID=Ggra3874.t1|Name=Ggra3874.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000850_pilon:2290874..2291815+ (Gracilaria gracilis GNS1m male)
ATGAAGCTCTCCACGTACCTGGACTGCCTGTGCGACTGCATTCCGCGCCG
TCGCCGCGCCGTGCACCTGCCGGCCTCGCCCTCCGCGCGCAACCGCTTCG
ACGCGCCGCCGTCGCCGTCGCCGTCGGCGCCGCCGCTGCCCGGCGCGGGC
GCCGGCGCGGGCGCCGGCGCGGGCGCGGGTGCGGGCGCGGGCGCGGGTGC
GGGTGCGGGCGCGAGCGCGGGCAACGTTGCGGCGCTTGCGGAGCATCGCC
GCGTCACGGCGGCCTTCATGCGCGCGGATGAGGcgccgtcgcagccgcag
ccgcctccgccgccgtcgccCAGCCCGCACTGCGGCTGCTTTCAGTTCAT
GCCGCCGCAGCCGCTGTGCGAGGCGCCGTGCATCCAGCCGTACTTTCCGT
GGAAAGCGCCGTCCAACCAGTCGTTCTTCGCCAGCAGCGTGCTGCACGCC
GCCAGCTGCATGGGCTTTGAGTTTGGCGACGGCACTTTGTTGCCGTTCGT
GCCCGTGCGTCAGGTGACGCTGCATGTACGCAACGAGCAGATGCTATCGC
ACGCTCGCTTCAAACGACGCTCGGCTAGGTCACTGGCGAAGCTCGCTACC
ATTCGACTGTCGCTGTCCGCTGCGTCGTACACGCAGCTTGTGCATAGCGC
GCAGCGTGCCTTTCGTAACAGCACGTCGGCGGCGTTGCTGTTGCCTCCGA
TTCAACAAAAGGCTCAGCGCGTCACCGTGCAGGTGCACCTGAACCCACGT
GCGTCGGACGTTGCGCTGCAGGAGGATTGTATGTGTACTAAACTCATTGC
TCACTACTCTACGCTGCAGAGCGCCGATCTTGATGGTCGCGCTCTGCTCA
TGTTCTGTGTTCAACACCGCTCCAGTACCACGTCTTCGCCGCTTGAGATT
CGACTGCATCGCTTTCAGTTGCTTGATCATGTAGCTTTGTAA
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