Ggra3871.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3871.t1
Unique Name	Ggra3871.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	499

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:2285495..2286991 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3871	Ggra3871	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 2285495..2286991 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3871.t1.stop1	Ggra3871.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 2285495..2285497 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3871.t1.CDS1	Ggra3871.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 2285495..2286991 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3871.t1.exon1	Ggra3871.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 2285495..2286991 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3871.t1.start1	Ggra3871.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 2286989..2286991 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3871.t1	Ggra3871.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 2285495..2286991 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:2285495..2286991-
coding sequence from alignment at tig00000850_pilon:2285495..2286991-

mRNA sequence

>Ggra3871.t1 ID=Ggra3871.t1|Name=Ggra3871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=499bp
MVIRLAISLTILVLLTPPFVIAEDLKQQPKLSSVPTLSYEEVQDLLTSNE
TACREATANIFKLCHTAKLRDRVKLASLITTCIENSLTTHGYSHISTWDD
DFGLQRVSEAHIETLMSISLPSLKALCDKTELSSPASLAKNSLLYEEVIS
NSSSNVIQTSRVLKSCTAIVGLSTFRENFDELAALLESMLPHVHDITKAS
NTHRSTFEMFSAKMRKKFRIFQSQIETQLGQVESMLKTAKYAYADHRKSV
WEMKPYINKFGSLADIEVRLRKLESETAFNNRASSIAYSEWLTRRGIAPQ
KCFLHVDKPIKNEYCMRGGKRRDHSKGRNSKQGKGCEEGDLLWAFLRKAR
RFYSAQLGRWLSHDGCDSARKKHDAKIKLNKLQKDMEAGLICVYTHNTGV
LMLFILVLAVCVYVRRRMYIMKRELSVRADELIVLFEREFGKQRQARHRK
ESGTDLYDISKRVNELMTLCDYFDALLRSCDGFCKEIERAMNSGMGCR*

spliced messenger RNA

>Ggra3871.t1 ID=Ggra3871.t1|Name=Ggra3871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000850_pilon:2285495..2286991- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATTCGACTAGCGATTTCGCTGACCATTCTGGTTTTGCTAACTCC
CCCCTTTGTCATAGCAGAAGATCTCAAACAACAACCAAAACTCTCCTCCG
TTCCCACCCTATCATATGAAGAGGTGCAAGATCTGTTAACATCGAATGAA
ACTGCATGTCGAGAAGCGACTGCGAATATTTTCAAGTTATGCCATACCGC
TAAACTAAGGGACCGTGTGAAGCTTGCTTCCCTCATCACGACATGTATTG
AAAACTCGTTGACAACACATGGGTACTCTCATATCTCAACATGGGACGAC
GACTTTGGACTGCAAAGGGTCTCCGAAGCACATATCGAAACGCTGATGTC
CATCTCTCTTCCATCTTTGAAGGCTCTATGTGATAAAACCGAGCTGTCTT
CACCCGCTTCCCTCGCAAAAAACTCTTTGTTGTATGAAGAAGTTATATCC
AATTCATCGTCAAACGTAATTCAGACATCAAGAGTACTGAAAAGCTGTAC
AGCAATTGTCGGACTGTCAACTTTCAGAGAGAATTTCGACGAGCTCGCAG
CTTTACTAGAAAGCATGCTCCCACATGTTCATGACATCACCAAGGCCTCG
AATACGCACCGTAGTACGTTTGAAATGTTCTCCGCGAAGATGCGAAAAAA
GTTCAGGATCTTTCAGAGCCAGATTGAAACACAGCTTGGGCAAGTTGAGA
GCATGTTGAAGACTGCAAAATATGCGTATGCAGATCATCGGAAATCAGTA
TGGGAAATGAAGCCATACATTAACAAATTCGGAAGCTTGGCAGACATTGA
AGTTCGTTTAAGGAAGCTAGAGTCTGAGACAGCTTTCAATAATCGAGCAA
GTTCCATTGCTTATTCTGAGTGGCTTACGAGAAGGGGAATAGCTCCACAG
AAATGCTTCTTACATGTCGACAAACCCATTAAGAATGAATATTGTATGAG
AGGGGGGAAACGAAGAGATCATAGCAAAGGGAGGAATTCGAAACAGGGAA
AGGGATGTGAGGAAGGTGATCTTCTTTGGGCGTTTTTGCGAAAAGCAAGA
AGGTTCTACTCGGCTCAATTAGGTCGATGGCTTTCTCATGATGGGTGCGA
TTCGGCAAGAAAGAAGCATGACGCTAAAATTAAGCTTAACAAACTGCAAA
AGGACATGGAAGCCGGTCTGATATGCGTGTATACTCACAACACAGGTGTA
TTAATGTTGTTCATTTTGGTGTTGGCGGTATGCGTGTATGTTCGTCGAAG
AATGTATATAATGAAAAGAGAACTGAGTGTTAGGGCCGATGAACTAATCG
TTCTGTTTGAAAGAGAATTTGGAAAACAGCGACAAGCGAGACACAGAAAA
GAAAGCGGAACGGATCTTTACGACATTTCAAAACGCGTCAATGAACTCAT
GACGTTGTGCGACTACTTCGACGCACTTCTACGGTCTTGTGACGGGTTTT
GCAAGGAAATCGAACGCGCCATGAACTCAGGGATGGGATGCCGATAG

protein sequence of Ggra3871.t1

>Ggra3871.t1 ID=Ggra3871.t1|Name=Ggra3871.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=499bp
MVIRLAISLTILVLLTPPFVIAEDLKQQPKLSSVPTLSYEEVQDLLTSNE
TACREATANIFKLCHTAKLRDRVKLASLITTCIENSLTTHGYSHISTWDD
DFGLQRVSEAHIETLMSISLPSLKALCDKTELSSPASLAKNSLLYEEVIS
NSSSNVIQTSRVLKSCTAIVGLSTFRENFDELAALLESMLPHVHDITKAS
NTHRSTFEMFSAKMRKKFRIFQSQIETQLGQVESMLKTAKYAYADHRKSV
WEMKPYINKFGSLADIEVRLRKLESETAFNNRASSIAYSEWLTRRGIAPQ
KCFLHVDKPIKNEYCMRGGKRRDHSKGRNSKQGKGCEEGDLLWAFLRKAR
RFYSAQLGRWLSHDGCDSARKKHDAKIKLNKLQKDMEAGLICVYTHNTGV
LMLFILVLAVCVYVRRRMYIMKRELSVRADELIVLFEREFGKQRQARHRK
ESGTDLYDISKRVNELMTLCDYFDALLRSCDGFCKEIERAMNSGMGCR*

mRNA from alignment at tig00000850_pilon:2285495..2286991-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3871.t1 ID=Ggra3871.t1|Name=Ggra3871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00000850_pilon:2285495..2286991- (Gracilaria gracilis GNS1m male)
ATGGTCATTCGACTAGCGATTTCGCTGACCATTCTGGTTTTGCTAACTCC
CCCCTTTGTCATAGCAGAAGATCTCAAACAACAACCAAAACTCTCCTCCG
TTCCCACCCTATCATATGAAGAGGTGCAAGATCTGTTAACATCGAATGAA
ACTGCATGTCGAGAAGCGACTGCGAATATTTTCAAGTTATGCCATACCGC
TAAACTAAGGGACCGTGTGAAGCTTGCTTCCCTCATCACGACATGTATTG
AAAACTCGTTGACAACACATGGGTACTCTCATATCTCAACATGGGACGAC
GACTTTGGACTGCAAAGGGTCTCCGAAGCACATATCGAAACGCTGATGTC
CATCTCTCTTCCATCTTTGAAGGCTCTATGTGATAAAACCGAGCTGTCTT
CACCCGCTTCCCTCGCAAAAAACTCTTTGTTGTATGAAGAAGTTATATCC
AATTCATCGTCAAACGTAATTCAGACATCAAGAGTACTGAAAAGCTGTAC
AGCAATTGTCGGACTGTCAACTTTCAGAGAGAATTTCGACGAGCTCGCAG
CTTTACTAGAAAGCATGCTCCCACATGTTCATGACATCACCAAGGCCTCG
AATACGCACCGTAGTACGTTTGAAATGTTCTCCGCGAAGATGCGAAAAAA
GTTCAGGATCTTTCAGAGCCAGATTGAAACACAGCTTGGGCAAGTTGAGA
GCATGTTGAAGACTGCAAAATATGCGTATGCAGATCATCGGAAATCAGTA
TGGGAAATGAAGCCATACATTAACAAATTCGGAAGCTTGGCAGACATTGA
AGTTCGTTTAAGGAAGCTAGAGTCTGAGACAGCTTTCAATAATCGAGCAA
GTTCCATTGCTTATTCTGAGTGGCTTACGAGAAGGGGAATAGCTCCACAG
AAATGCTTCTTACATGTCGACAAACCCATTAAGAATGAATATTGTATGAG
AGGGGGGAAACGAAGAGATCATAGCAAAGGGAGGAATTCGAAACAGGGAA
AGGGATGTGAGGAAGGTGATCTTCTTTGGGCGTTTTTGCGAAAAGCAAGA
AGGTTCTACTCGGCTCAATTAGGTCGATGGCTTTCTCATGATGGGTGCGA
TTCGGCAAGAAAGAAGCATGACGCTAAAATTAAGCTTAACAAACTGCAAA
AGGACATGGAAGCCGGTCTGATATGCGTGTATACTCACAACACAGGTGTA
TTAATGTTGTTCATTTTGGTGTTGGCGGTATGCGTGTATGTTCGTCGAAG
AATGTATATAATGAAAAGAGAACTGAGTGTTAGGGCCGATGAACTAATCG
TTCTGTTTGAAAGAGAATTTGGAAAACAGCGACAAGCGAGACACAGAAAA
GAAAGCGGAACGGATCTTTACGACATTTCAAAACGCGTCAATGAACTCAT
GACGTTGTGCGACTACTTCGACGCACTTCTACGGTCTTGTGACGGGTTTT
GCAAGGAAATCGAACGCGCCATGAACTCAGGGATGGGATGCCGATAG

Coding sequence (CDS) from alignment at tig00000850_pilon:2285495..2286991-

>Ggra3871.t1 ID=Ggra3871.t1|Name=Ggra3871.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00000850_pilon:2285495..2286991- (Gracilaria gracilis GNS1m male)
ATGGTCATTCGACTAGCGATTTCGCTGACCATTCTGGTTTTGCTAACTCC
CCCCTTTGTCATAGCAGAAGATCTCAAACAACAACCAAAACTCTCCTCCG
TTCCCACCCTATCATATGAAGAGGTGCAAGATCTGTTAACATCGAATGAA
ACTGCATGTCGAGAAGCGACTGCGAATATTTTCAAGTTATGCCATACCGC
TAAACTAAGGGACCGTGTGAAGCTTGCTTCCCTCATCACGACATGTATTG
AAAACTCGTTGACAACACATGGGTACTCTCATATCTCAACATGGGACGAC
GACTTTGGACTGCAAAGGGTCTCCGAAGCACATATCGAAACGCTGATGTC
CATCTCTCTTCCATCTTTGAAGGCTCTATGTGATAAAACCGAGCTGTCTT
CACCCGCTTCCCTCGCAAAAAACTCTTTGTTGTATGAAGAAGTTATATCC
AATTCATCGTCAAACGTAATTCAGACATCAAGAGTACTGAAAAGCTGTAC
AGCAATTGTCGGACTGTCAACTTTCAGAGAGAATTTCGACGAGCTCGCAG
CTTTACTAGAAAGCATGCTCCCACATGTTCATGACATCACCAAGGCCTCG
AATACGCACCGTAGTACGTTTGAAATGTTCTCCGCGAAGATGCGAAAAAA
GTTCAGGATCTTTCAGAGCCAGATTGAAACACAGCTTGGGCAAGTTGAGA
GCATGTTGAAGACTGCAAAATATGCGTATGCAGATCATCGGAAATCAGTA
TGGGAAATGAAGCCATACATTAACAAATTCGGAAGCTTGGCAGACATTGA
AGTTCGTTTAAGGAAGCTAGAGTCTGAGACAGCTTTCAATAATCGAGCAA
GTTCCATTGCTTATTCTGAGTGGCTTACGAGAAGGGGAATAGCTCCACAG
AAATGCTTCTTACATGTCGACAAACCCATTAAGAATGAATATTGTATGAG
AGGGGGGAAACGAAGAGATCATAGCAAAGGGAGGAATTCGAAACAGGGAA
AGGGATGTGAGGAAGGTGATCTTCTTTGGGCGTTTTTGCGAAAAGCAAGA
AGGTTCTACTCGGCTCAATTAGGTCGATGGCTTTCTCATGATGGGTGCGA
TTCGGCAAGAAAGAAGCATGACGCTAAAATTAAGCTTAACAAACTGCAAA
AGGACATGGAAGCCGGTCTGATATGCGTGTATACTCACAACACAGGTGTA
TTAATGTTGTTCATTTTGGTGTTGGCGGTATGCGTGTATGTTCGTCGAAG
AATGTATATAATGAAAAGAGAACTGAGTGTTAGGGCCGATGAACTAATCG
TTCTGTTTGAAAGAGAATTTGGAAAACAGCGACAAGCGAGACACAGAAAA
GAAAGCGGAACGGATCTTTACGACATTTCAAAACGCGTCAATGAACTCAT
GACGTTGTGCGACTACTTCGACGCACTTCTACGGTCTTGTGACGGGTTTT
GCAAGGAAATCGAACGCGCCATGAACTCAGGGATGGGATGCCGATAG