Ggra3862.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3862.t1
Unique NameGgra3862.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2257651..2258382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3862Ggra3862Gracilaria gracilis GNS1m malegenetig00000850_pilon 2257651..2258382 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3862.t1.start1Ggra3862.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2257651..2257653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3862.t1.CDS1Ggra3862.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2257651..2258382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3862.t1.exon1Ggra3862.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2257651..2258382 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3862.t1.stop1Ggra3862.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2258380..2258382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3862.t1Ggra3862.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2257651..2258382 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3862.t1 ID=Ggra3862.t1|Name=Ggra3862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=244bp
MAPRSLSATCDGWHTFNATIFDPVRIAAIAHLRYAPMRERGAIIMKASHP
AEYRVTHHAASGLWDLLPTVNNAAPVPLSPSINDAAHASMRSAASSESPK
QKMDAPLNHLSPHNAVMSALKKSATHRRFAITVAGSNRHFMLHPSATSSR
HFVLCELHAGPSIISSSPRAVPHPSQFEHNHDDENDDGVQVASFTCDGVW
KRSYSISVERLIPDELVVFCFWLVNLMNRRANRADPAHVHGSA*
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spliced messenger RNA

>Ggra3862.t1 ID=Ggra3862.t1|Name=Ggra3862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000850_pilon:2257651..2258382+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCCGTTCGCTCTCTGCTACCTGCGATGGTTGGCACACCTTCAA
CGCCACCATCTTCGACCCCGTGCGTATTGCCGCTATCGCCCATCTGCGGT
ACGCGCCCATGCGTGAGCGCGGTGCTATTATCATGAAGGCTTCGCACCCG
GCAGAGTATCGCGTCACCCATCATGCTGCCTCGGGGCTGTGGGACCTGCT
TCCCACCGTCAACAACGCTGCGCCCGTGCCGTTGTCGCCCTCTATCAACG
ATGCCGCACATGCGTCCATGCGCTCCGCCGCCTCGTCGGAGAGCCCCAAG
CAGAAGATGGACGCCCCTCTCAACCACCTGTCGCCGCATAATGCCGTCAT
GTCCGCCTTGAAGAAGAGCGCAACGCACAGGCGCTTCGCCATTACTGTGG
CCGGCTCCAATCGCCACTTTATGCTGCATCCTAGCGCCACCTCCAGTCGT
CACTTTGTGCTGTGTGAGCTGCACGCTGGGCCCTCTATTATCTCCTCCAG
CCCGAGGGCTGTGCCACACCCGTCCCAATTTGAACATAATCATGACGACG
AGAATGATGACGGCGTGCAGGTCGCCTCGTTTACTTGTGATGGCGTCTGG
AAGAGGAGTTATTCTATCTCTGTGGAACGCTTGATCCCGGATGAGTTAGT
CGTGTTTTGCTTTTGGTTGGTAAACTTGATGAACAGGAGGGCTAATCGCG
CCGATCCGGCGCATGTTCATGGATCAGCCTGA
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protein sequence of Ggra3862.t1

>Ggra3862.t1 ID=Ggra3862.t1|Name=Ggra3862.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=244bp
MAPRSLSATCDGWHTFNATIFDPVRIAAIAHLRYAPMRERGAIIMKASHP
AEYRVTHHAASGLWDLLPTVNNAAPVPLSPSINDAAHASMRSAASSESPK
QKMDAPLNHLSPHNAVMSALKKSATHRRFAITVAGSNRHFMLHPSATSSR
HFVLCELHAGPSIISSSPRAVPHPSQFEHNHDDENDDGVQVASFTCDGVW
KRSYSISVERLIPDELVVFCFWLVNLMNRRANRADPAHVHGSA*
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mRNA from alignment at tig00000850_pilon:2257651..2258382+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3862.t1 ID=Ggra3862.t1|Name=Ggra3862.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000850_pilon:2257651..2258382+ (Gracilaria gracilis GNS1m male)
ATGGCTCCCCGTTCGCTCTCTGCTACCTGCGATGGTTGGCACACCTTCAA
CGCCACCATCTTCGACCCCGTGCGTATTGCCGCTATCGCCCATCTGCGGT
ACGCGCCCATGCGTGAGCGCGGTGCTATTATCATGAAGGCTTCGCACCCG
GCAGAGTATCGCGTCACCCATCATGCTGCCTCGGGGCTGTGGGACCTGCT
TCCCACCGTCAACAACGCTGCGCCCGTGCCGTTGTCGCCCTCTATCAACG
ATGCCGCACATGCGTCCATGCGCTCCGCCGCCTCGTCGGAGAGCCCCAAG
CAGAAGATGGACGCCCCTCTCAACCACCTGTCGCCGCATAATGCCGTCAT
GTCCGCCTTGAAGAAGAGCGCAACGCACAGGCGCTTCGCCATTACTGTGG
CCGGCTCCAATCGCCACTTTATGCTGCATCCTAGCGCCACCTCCAGTCGT
CACTTTGTGCTGTGTGAGCTGCACGCTGGGCCCTCTATTATCTCCTCCAG
CCCGAGGGCTGTGCCACACCCGTCCCAATTTGAACATAATCATGACGACG
AGAATGATGACGGCGTGCAGGTCGCCTCGTTTACTTGTGATGGCGTCTGG
AAGAGGAGTTATTCTATCTCTGTGGAACGCTTGATCCCGGATGAGTTAGT
CGTGTTTTGCTTTTGGTTGGTAAACTTGATGAACAGGAGGGCTAATCGCG
CCGATCCGGCGCATGTTCATGGATCAGCCTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2257651..2258382+

>Ggra3862.t1 ID=Ggra3862.t1|Name=Ggra3862.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=732bp|location=Sequence derived from alignment at tig00000850_pilon:2257651..2258382+ (Gracilaria gracilis GNS1m male)
ATGGCTCCCCGTTCGCTCTCTGCTACCTGCGATGGTTGGCACACCTTCAA
CGCCACCATCTTCGACCCCGTGCGTATTGCCGCTATCGCCCATCTGCGGT
ACGCGCCCATGCGTGAGCGCGGTGCTATTATCATGAAGGCTTCGCACCCG
GCAGAGTATCGCGTCACCCATCATGCTGCCTCGGGGCTGTGGGACCTGCT
TCCCACCGTCAACAACGCTGCGCCCGTGCCGTTGTCGCCCTCTATCAACG
ATGCCGCACATGCGTCCATGCGCTCCGCCGCCTCGTCGGAGAGCCCCAAG
CAGAAGATGGACGCCCCTCTCAACCACCTGTCGCCGCATAATGCCGTCAT
GTCCGCCTTGAAGAAGAGCGCAACGCACAGGCGCTTCGCCATTACTGTGG
CCGGCTCCAATCGCCACTTTATGCTGCATCCTAGCGCCACCTCCAGTCGT
CACTTTGTGCTGTGTGAGCTGCACGCTGGGCCCTCTATTATCTCCTCCAG
CCCGAGGGCTGTGCCACACCCGTCCCAATTTGAACATAATCATGACGACG
AGAATGATGACGGCGTGCAGGTCGCCTCGTTTACTTGTGATGGCGTCTGG
AAGAGGAGTTATTCTATCTCTGTGGAACGCTTGATCCCGGATGAGTTAGT
CGTGTTTTGCTTTTGGTTGGTAAACTTGATGAACAGGAGGGCTAATCGCG
CCGATCCGGCGCATGTTCATGGATCAGCCTGA
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