Ggra3860.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3860.t1
Unique Name	Ggra3860.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:2251915..2253774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705615.1
PFAMs	ABC2_membrane,ABC_tran
Max annot lvl	2759\|Eukaryota
Evalue	1.18e-196
EggNOG OGs	COG1131@1\|root,KOG0061@2759\|Eukaryota
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	V

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3860	Ggra3860	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 2251915..2253774 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3860.t1.start1	Ggra3860.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 2251915..2251917 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3860.t1.CDS1	Ggra3860.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 2251915..2253774 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3860.t1.exon1	Ggra3860.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 2251915..2253774 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3860.t1.stop1	Ggra3860.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 2253772..2253774 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3860.t1	Ggra3860.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 2251915..2253774 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:2251915..2253774+
coding sequence from alignment at tig00000850_pilon:2251915..2253774+

mRNA sequence

>Ggra3860.t1 ID=Ggra3860.t1|Name=Ggra3860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=620bp
MAEVVEDARLVREVSSLRTKGSCLSWNGVTVDVPLSGKAVKKDPENPSTK
RILNNISGYVKPGQLLFCMGPSGSGKSSLLDSLADRVRLPVQGTQILDGK
VKTPPALKAVAKYVQQKDDLLGVLTVRETLQTAAEFYLSNKAARPAAVDE
VIDILGLRSHEHTKIGNSLVRGLSGGQIRRVSIGCELVAAPQLIFLDEPT
SGLDSATAFHVMTELRRIAKNTGMSMIITVHQPSELVFEMADTLLLITSG
STCYFGPAAKAAGYFSSLGFPTPEKTSDIEWMLDLVNKDFGHLDRIEKCV
ASWPKSEFAADLQRELRELEDSSEREIHGIGKKLERTKYASSFMQQTITL
TRRGVLNTIRNPAVLWLRFAMYLMLSLMIGLVWLRLGTSASIINDYNYSL
FYTCAFMIFMSVSVLPAYLEERSVLVRERANGAYSVGAYILSHTLYEIPY
VFLLALMASSVTYWLVGFTPTARRFFIFVANLFLSLFVAESMMVLISAMI
PILIVGIAAGAMTFGLFMCVMGAFISVDRIGWWLRWVRYVAAHFYSYSTF
LVNQFQDTTWDASPNTFPPFLEAVPGEEVYRALGLEERLWVNFAALFAMV
VFYRLVAAIWLQLFLKGKK*

spliced messenger RNA

>Ggra3860.t1 ID=Ggra3860.t1|Name=Ggra3860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000850_pilon:2251915..2253774+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGGTCGTCGAAGATGCACGACTGGTACGTGAGGTCTCTTCTCT
CAGAACAAAGGGCAGCTGCCTTTCATGGAACGGTGTAACAGTCGATGTCC
CGCTTTCTGGCAAAGCTGTGAAGAAAGACCCAGAGAATCCATCTACCAAG
CGCATTCTGAACAACATATCAGGTTATGTAAAGCCGGGTCAACTTCTGTT
CTGCATGGGGCCTTCAGGTTCTGGAAAGTCCTCACTTCTTGATTCTCTTG
CCGATAGGGTTAGACTTCCAGTACAGGGAACGCAGATTCTCGATGGAAAG
GTTAAGACCCCACCTGCATTGAAGGCTGTAGCCAAATACGTGCAGCAAAA
GGATGATCTGTTGGGTGTTCTGACTGTACGAGAGACCCTGCAAACCGCCG
CCGAGTTTTATCTATCGAACAAAGCAGCGCGTCCTGCGGCTGTTGATGAG
GTCATTGACATTCTTGGTTTGCGCTCTCATGAACACACAAAGATTGGAAA
TTCACTAGTGCGTGGTTTGAGCGGTGGTCAAATCCGTCGTGTATCCATCG
GATGTGAGCTTGTTGCCGCACCTCAGCTCATCTTTCTTGACGAACCTACC
TCTGGTCTTGACAGTGCCACTGCTTTCCATGTGATGACTGAGTTGAGGCG
TATTGCAAAGAACACTGGTATGTCCATGATCATCACCGTCCATCAACCTA
GTGAGCTTGTGTTCGAAATGGCGGATACACTTTTGCTCATTACCAGCGGA
AGCACATGCTACTTTGGACCGGCGGCAAAGGCAGCTGGCTACTTCTCATC
TCTTGGTTTTCCCACACCCGAAAAGACTTCCGACATTGAGTGGATGCTCG
ACTTGGTAAACAAGGACTTTGGACACCTTGACAGAATCGAGAAGTGTGTT
GCCAGCTGGCCTAAATCTGAGTTCGCCGCAGATCTTCAACGAGAGTTGAG
GGAATTGGAAGACTCATCCGAAAGGGAGATTCATGGGATTGGGAAGAAGC
TTGAGCGTACAAAGTACGCGTCTAGTTTCATGCAACAGACAATCACACTG
ACTCGGAGAGGCGTTTTAAACACCATTCGCAACCCTGCTGTTCTATGGCT
TCGATTTGCCATGTACTTGATGTTGTCGCTTATGATTGGTCTTGTATGGC
TTCGTCTTGGAACCTCCGCCTCCATTATTAATGATTACAACTACTCGTTG
TTCTACACTTGTGCCTTCATGATTTTTATGTCTGTCTCAGTTTTGCCTGC
ATACTTGGAAGAAAGATCTGTCTTGGTTCGGGAGCGGGCAAATGGAGCCT
ATTCTGTAGGAGCATACATCTTGTCCCATACTTTGTATGAAATCCCGTAC
GTATTTCTTCTGGCATTGATGGCTTCGTCTGTGACGTATTGGCTCGTCGG
ATTTACTCCAACCGCTAGACGTTTCTTCATCTTTGTAGCGAACTTGTTCT
TGTCGTTGTTCGTCGCTGAATCGATGATGGTGCTCATTTCCGCTATGATT
CCGATTCTGATCGTGGGAATTGCAGCAGGAGCAATGACATTTGGTCTGTT
CATGTGCGTGATGGGTGCGTTTATTAGTGTTGATCGCATCGGATGGTGGC
TGAGGTGGGTTCGTTACGTTGCAGCGCACTTTTACTCTTATTCCACTTTC
CTCGTTAATCAGTTCCAAGATACGACATGGGATGCGTCGCCAAACACCTT
CCCACCGTTTTTGGAGGCTGTGCCGGGTGAGGAAGTGTACAGAGCCCTTG
GACTAGAAGAACGTTTGTGGGTGAACTTTGCTGCGTTGTTTGCAATGGTT
GTATTCTACCGGCTGGTCGCAGCGATTTGGCTGCAGTTGTTCCTCAAGGG
CAAGAAATGA

protein sequence of Ggra3860.t1

>Ggra3860.t1 ID=Ggra3860.t1|Name=Ggra3860.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=620bp
MAEVVEDARLVREVSSLRTKGSCLSWNGVTVDVPLSGKAVKKDPENPSTK
RILNNISGYVKPGQLLFCMGPSGSGKSSLLDSLADRVRLPVQGTQILDGK
VKTPPALKAVAKYVQQKDDLLGVLTVRETLQTAAEFYLSNKAARPAAVDE
VIDILGLRSHEHTKIGNSLVRGLSGGQIRRVSIGCELVAAPQLIFLDEPT
SGLDSATAFHVMTELRRIAKNTGMSMIITVHQPSELVFEMADTLLLITSG
STCYFGPAAKAAGYFSSLGFPTPEKTSDIEWMLDLVNKDFGHLDRIEKCV
ASWPKSEFAADLQRELRELEDSSEREIHGIGKKLERTKYASSFMQQTITL
TRRGVLNTIRNPAVLWLRFAMYLMLSLMIGLVWLRLGTSASIINDYNYSL
FYTCAFMIFMSVSVLPAYLEERSVLVRERANGAYSVGAYILSHTLYEIPY
VFLLALMASSVTYWLVGFTPTARRFFIFVANLFLSLFVAESMMVLISAMI
PILIVGIAAGAMTFGLFMCVMGAFISVDRIGWWLRWVRYVAAHFYSYSTF
LVNQFQDTTWDASPNTFPPFLEAVPGEEVYRALGLEERLWVNFAALFAMV
VFYRLVAAIWLQLFLKGKK*

mRNA from alignment at tig00000850_pilon:2251915..2253774+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3860.t1 ID=Ggra3860.t1|Name=Ggra3860.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000850_pilon:2251915..2253774+ (Gracilaria gracilis GNS1m male)
ATGGCCGAGGTCGTCGAAGATGCACGACTGGTACGTGAGGTCTCTTCTCT
CAGAACAAAGGGCAGCTGCCTTTCATGGAACGGTGTAACAGTCGATGTCC
CGCTTTCTGGCAAAGCTGTGAAGAAAGACCCAGAGAATCCATCTACCAAG
CGCATTCTGAACAACATATCAGGTTATGTAAAGCCGGGTCAACTTCTGTT
CTGCATGGGGCCTTCAGGTTCTGGAAAGTCCTCACTTCTTGATTCTCTTG
CCGATAGGGTTAGACTTCCAGTACAGGGAACGCAGATTCTCGATGGAAAG
GTTAAGACCCCACCTGCATTGAAGGCTGTAGCCAAATACGTGCAGCAAAA
GGATGATCTGTTGGGTGTTCTGACTGTACGAGAGACCCTGCAAACCGCCG
CCGAGTTTTATCTATCGAACAAAGCAGCGCGTCCTGCGGCTGTTGATGAG
GTCATTGACATTCTTGGTTTGCGCTCTCATGAACACACAAAGATTGGAAA
TTCACTAGTGCGTGGTTTGAGCGGTGGTCAAATCCGTCGTGTATCCATCG
GATGTGAGCTTGTTGCCGCACCTCAGCTCATCTTTCTTGACGAACCTACC
TCTGGTCTTGACAGTGCCACTGCTTTCCATGTGATGACTGAGTTGAGGCG
TATTGCAAAGAACACTGGTATGTCCATGATCATCACCGTCCATCAACCTA
GTGAGCTTGTGTTCGAAATGGCGGATACACTTTTGCTCATTACCAGCGGA
AGCACATGCTACTTTGGACCGGCGGCAAAGGCAGCTGGCTACTTCTCATC
TCTTGGTTTTCCCACACCCGAAAAGACTTCCGACATTGAGTGGATGCTCG
ACTTGGTAAACAAGGACTTTGGACACCTTGACAGAATCGAGAAGTGTGTT
GCCAGCTGGCCTAAATCTGAGTTCGCCGCAGATCTTCAACGAGAGTTGAG
GGAATTGGAAGACTCATCCGAAAGGGAGATTCATGGGATTGGGAAGAAGC
TTGAGCGTACAAAGTACGCGTCTAGTTTCATGCAACAGACAATCACACTG
ACTCGGAGAGGCGTTTTAAACACCATTCGCAACCCTGCTGTTCTATGGCT
TCGATTTGCCATGTACTTGATGTTGTCGCTTATGATTGGTCTTGTATGGC
TTCGTCTTGGAACCTCCGCCTCCATTATTAATGATTACAACTACTCGTTG
TTCTACACTTGTGCCTTCATGATTTTTATGTCTGTCTCAGTTTTGCCTGC
ATACTTGGAAGAAAGATCTGTCTTGGTTCGGGAGCGGGCAAATGGAGCCT
ATTCTGTAGGAGCATACATCTTGTCCCATACTTTGTATGAAATCCCGTAC
GTATTTCTTCTGGCATTGATGGCTTCGTCTGTGACGTATTGGCTCGTCGG
ATTTACTCCAACCGCTAGACGTTTCTTCATCTTTGTAGCGAACTTGTTCT
TGTCGTTGTTCGTCGCTGAATCGATGATGGTGCTCATTTCCGCTATGATT
CCGATTCTGATCGTGGGAATTGCAGCAGGAGCAATGACATTTGGTCTGTT
CATGTGCGTGATGGGTGCGTTTATTAGTGTTGATCGCATCGGATGGTGGC
TGAGGTGGGTTCGTTACGTTGCAGCGCACTTTTACTCTTATTCCACTTTC
CTCGTTAATCAGTTCCAAGATACGACATGGGATGCGTCGCCAAACACCTT
CCCACCGTTTTTGGAGGCTGTGCCGGGTGAGGAAGTGTACAGAGCCCTTG
GACTAGAAGAACGTTTGTGGGTGAACTTTGCTGCGTTGTTTGCAATGGTT
GTATTCTACCGGCTGGTCGCAGCGATTTGGCTGCAGTTGTTCCTCAAGGG
CAAGAAATGA

Coding sequence (CDS) from alignment at tig00000850_pilon:2251915..2253774+

>Ggra3860.t1 ID=Ggra3860.t1|Name=Ggra3860.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1860bp|location=Sequence derived from alignment at tig00000850_pilon:2251915..2253774+ (Gracilaria gracilis GNS1m male)
ATGGCCGAGGTCGTCGAAGATGCACGACTGGTACGTGAGGTCTCTTCTCT
CAGAACAAAGGGCAGCTGCCTTTCATGGAACGGTGTAACAGTCGATGTCC
CGCTTTCTGGCAAAGCTGTGAAGAAAGACCCAGAGAATCCATCTACCAAG
CGCATTCTGAACAACATATCAGGTTATGTAAAGCCGGGTCAACTTCTGTT
CTGCATGGGGCCTTCAGGTTCTGGAAAGTCCTCACTTCTTGATTCTCTTG
CCGATAGGGTTAGACTTCCAGTACAGGGAACGCAGATTCTCGATGGAAAG
GTTAAGACCCCACCTGCATTGAAGGCTGTAGCCAAATACGTGCAGCAAAA
GGATGATCTGTTGGGTGTTCTGACTGTACGAGAGACCCTGCAAACCGCCG
CCGAGTTTTATCTATCGAACAAAGCAGCGCGTCCTGCGGCTGTTGATGAG
GTCATTGACATTCTTGGTTTGCGCTCTCATGAACACACAAAGATTGGAAA
TTCACTAGTGCGTGGTTTGAGCGGTGGTCAAATCCGTCGTGTATCCATCG
GATGTGAGCTTGTTGCCGCACCTCAGCTCATCTTTCTTGACGAACCTACC
TCTGGTCTTGACAGTGCCACTGCTTTCCATGTGATGACTGAGTTGAGGCG
TATTGCAAAGAACACTGGTATGTCCATGATCATCACCGTCCATCAACCTA
GTGAGCTTGTGTTCGAAATGGCGGATACACTTTTGCTCATTACCAGCGGA
AGCACATGCTACTTTGGACCGGCGGCAAAGGCAGCTGGCTACTTCTCATC
TCTTGGTTTTCCCACACCCGAAAAGACTTCCGACATTGAGTGGATGCTCG
ACTTGGTAAACAAGGACTTTGGACACCTTGACAGAATCGAGAAGTGTGTT
GCCAGCTGGCCTAAATCTGAGTTCGCCGCAGATCTTCAACGAGAGTTGAG
GGAATTGGAAGACTCATCCGAAAGGGAGATTCATGGGATTGGGAAGAAGC
TTGAGCGTACAAAGTACGCGTCTAGTTTCATGCAACAGACAATCACACTG
ACTCGGAGAGGCGTTTTAAACACCATTCGCAACCCTGCTGTTCTATGGCT
TCGATTTGCCATGTACTTGATGTTGTCGCTTATGATTGGTCTTGTATGGC
TTCGTCTTGGAACCTCCGCCTCCATTATTAATGATTACAACTACTCGTTG
TTCTACACTTGTGCCTTCATGATTTTTATGTCTGTCTCAGTTTTGCCTGC
ATACTTGGAAGAAAGATCTGTCTTGGTTCGGGAGCGGGCAAATGGAGCCT
ATTCTGTAGGAGCATACATCTTGTCCCATACTTTGTATGAAATCCCGTAC
GTATTTCTTCTGGCATTGATGGCTTCGTCTGTGACGTATTGGCTCGTCGG
ATTTACTCCAACCGCTAGACGTTTCTTCATCTTTGTAGCGAACTTGTTCT
TGTCGTTGTTCGTCGCTGAATCGATGATGGTGCTCATTTCCGCTATGATT
CCGATTCTGATCGTGGGAATTGCAGCAGGAGCAATGACATTTGGTCTGTT
CATGTGCGTGATGGGTGCGTTTATTAGTGTTGATCGCATCGGATGGTGGC
TGAGGTGGGTTCGTTACGTTGCAGCGCACTTTTACTCTTATTCCACTTTC
CTCGTTAATCAGTTCCAAGATACGACATGGGATGCGTCGCCAAACACCTT
CCCACCGTTTTTGGAGGCTGTGCCGGGTGAGGAAGTGTACAGAGCCCTTG
GACTAGAAGAACGTTTGTGGGTGAACTTTGCTGCGTTGTTTGCAATGGTT
GTATTCTACCGGCTGGTCGCAGCGATTTGGCTGCAGTTGTTCCTCAAGGG
CAAGAAATGA