Ggra3856.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3856.t1
Unique NameGgra3856.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2239589..2240931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3856Ggra3856Gracilaria gracilis GNS1m malegenetig00000850_pilon 2239589..2240931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3856.t1Ggra3856.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2239589..2240931 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3856.t1.start1Ggra3856.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2239589..2239591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3856.t1.CDS1Ggra3856.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2239589..2239676 +
Ggra3856.t1.CDS2Ggra3856.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2239742..2240092 +
Ggra3856.t1.CDS3Ggra3856.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2240173..2240583 +
Ggra3856.t1.CDS4Ggra3856.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2240669..2240931 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3856.t1.exon1Ggra3856.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2239589..2239676 +
Ggra3856.t1.exon2Ggra3856.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2239742..2240092 +
Ggra3856.t1.exon3Ggra3856.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 2240173..2240583 +
Ggra3856.t1.exon4Ggra3856.t1.exon4Gracilaria gracilis GNS1m maleexontig00000850_pilon 2240669..2240931 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3856.t1.intron1Ggra3856.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2239677..2239741 +
Ggra3856.t1.intron2Ggra3856.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2240093..2240172 +
Ggra3856.t1.intron3Ggra3856.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2240584..2240668 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3856.t1.stop1Ggra3856.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2240929..2240931 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3856.t1 ID=Ggra3856.t1|Name=Ggra3856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=371bp
MNTFQLEWCGGLSRIDRKQICSSVLAFLRQNNPAVSYQFLLQLAVSLEES
AYHESACPVYYVETVVTRLHQAQASISITPPRQSPAVEQLPYQHAPYQHA
PYQHAPHPHAPHPHAPHQHTPQHAWRNSITREERNVVLRHMILKLTSFNE
GESPRAITEAATVFENCTYVSVDSKFAYLSSIAEELSRCEACHTLPAPSA
EVLSLSLQQQCQNQPCETPPQITQTHAITDSLPVPPTPNGPQNILNLEPG
ELMSHVFEQPNWKDLLTAGDRHTIVRHIYSKLTALNLNETTQQMYKKAIS
FELDAFTRAETGCSYLEYLIGIIGALQPVCIAEAILPPRGTVEQVRQPFL
QPDITNLSSISEQGSFTSGQ*
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spliced messenger RNA

>Ggra3856.t1 ID=Ggra3856.t1|Name=Ggra3856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000850_pilon:2239589..2240931+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACTTTTCAGCTGGAATGGTGCGGTGGATTGTCCAGAATAGATCG
CAAGCAGATTTGTTCTTCCGTATTGGCCTTCTTGAGACAAAACAACCCGG
CCGTCTCCTATCAGTTTCTTCTTCAACTTGCTGTCTCGCTCGAGGAAAGC
GCATACCACGAATCCGCCTGTCCCGTTTACTATGTTGAAACAGTCGTCAC
CAGATTGCATCAAGCACAGGCGTCCATATCCATAACGCCTCCCCGTCAGT
CTCCCGCTGTCGAACAACTTCCGTATCAGCACGCTCCGTATCAGCACGCT
CCATATCAGCACGCTCCTCATCCTCACGCTCCTCATCCTCACGCTCCTCA
TCAGCACACTCCTCAGCATGCATGGAGAAACAGTATTACTCGTGAAGAAC
GCAACGTAGTATTGCGCCATATGATACTTAAACTAACGAGCTTTAACGAA
GGAGAGTCTCCACGAGCAATCACCGAAGCAGCCACAGTTTTCGAGAACTG
CACTTACGTCAGCGTCGACTCAAAGTTTGCTTACCTCAGCTCTATAGCAG
AGGAGCTTAGTCGTTGTGAAGCGTGCCATACGTTGCCTGCACCGTCCGCG
GAAGTTCTTTCACTCTCCCTTCAGCAACAGTGTCAGAATCAACCTTGCGA
AACTCCACCCCAAATCACACAAACGCATGCCATTACAGATAGTCTACCTG
TTCCACCTACTCCGAACGGGCCTCAGAATATCTTAAATTTGGAGCCCGGC
GAGCTTATGTCTCACGTATTCGAACAACCGAACTGGAAGGATTTGCTCAC
AGCTGGAGACCGTCACACTATCGTGAGACATATTTACTCAAAACTAACGG
CTCTCAACCTTAATGAAACCACACAACAGATGTACAAAAAAGCCATCTCA
TTTGAACTTGATGCATTTACAAGGGCTGAAACAGGCTGTTCTTATCTCGA
ATACTTGATAGGAATCATTGGAGCTCTTCAGCCAGTGTGCATTGCAGAAG
CTATACTGCCGCCGAGAGGGACTGTGGAACAGGTCCGGCAACCATTCTTG
CAGCCTGATATTACAAACTTGAGTTCTATATCGGAGCAAGGGTCATTCAC
CTCTGGTCAATAG
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protein sequence of Ggra3856.t1

>Ggra3856.t1 ID=Ggra3856.t1|Name=Ggra3856.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MNTFQLEWCGGLSRIDRKQICSSVLAFLRQNNPAVSYQFLLQLAVSLEES
AYHESACPVYYVETVVTRLHQAQASISITPPRQSPAVEQLPYQHAPYQHA
PYQHAPHPHAPHPHAPHQHTPQHAWRNSITREERNVVLRHMILKLTSFNE
GESPRAITEAATVFENCTYVSVDSKFAYLSSIAEELSRCEACHTLPAPSA
EVLSLSLQQQCQNQPCETPPQITQTHAITDSLPVPPTPNGPQNILNLEPG
ELMSHVFEQPNWKDLLTAGDRHTIVRHIYSKLTALNLNETTQQMYKKAIS
FELDAFTRAETGCSYLEYLIGIIGALQPVCIAEAILPPRGTVEQVRQPFL
QPDITNLSSISEQGSFTSGQ*
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mRNA from alignment at tig00000850_pilon:2239589..2240931+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3856.t1 ID=Ggra3856.t1|Name=Ggra3856.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1343bp|location=Sequence derived from alignment at tig00000850_pilon:2239589..2240931+ (Gracilaria gracilis GNS1m male)
ATGAATACTTTTCAGCTGGAATGGTGCGGTGGATTGTCCAGAATAGATCG
CAAGCAGATTTGTTCTTCCGTATTGGCCTTCTTGAGACGTACGTCAGCTC
CTCTCTTTTCAACAACACCTGCTTACGCTACTGACAATCCGCTTCTGAAC
CAGAAAACAACCCGGCCGTCTCCTATCAGTTTCTTCTTCAACTTGCTGTC
TCGCTCGAGGAAAGCGCATACCACGAATCCGCCTGTCCCGTTTACTATGT
TGAAACAGTCGTCACCAGATTGCATCAAGCACAGGCGTCCATATCCATAA
CGCCTCCCCGTCAGTCTCCCGCTGTCGAACAACTTCCGTATCAGCACGCT
CCGTATCAGCACGCTCCATATCAGCACGCTCCTCATCCTCACGCTCCTCA
TCCTCACGCTCCTCATCAGCACACTCCTCAGCATGCATGGAGAAACAGTA
TTACTCGTGAAGAACGCAACGTAGTATTGCGCCATATGATACTTAAACTA
ACGAGTACGTAAGCCTGTTCCCACGTCAATAGCACTATTTCATTCTGCAG
CCTGCCCCTAACCACCAATCCACACTGTCTACAGGCTTTAACGAAGGAGA
GTCTCCACGAGCAATCACCGAAGCAGCCACAGTTTTCGAGAACTGCACTT
ACGTCAGCGTCGACTCAAAGTTTGCTTACCTCAGCTCTATAGCAGAGGAG
CTTAGTCGTTGTGAAGCGTGCCATACGTTGCCTGCACCGTCCGCGGAAGT
TCTTTCACTCTCCCTTCAGCAACAGTGTCAGAATCAACCTTGCGAAACTC
CACCCCAAATCACACAAACGCATGCCATTACAGATAGTCTACCTGTTCCA
CCTACTCCGAACGGGCCTCAGAATATCTTAAATTTGGAGCCCGGCGAGCT
TATGTCTCACGTATTCGAACAACCGAACTGGAAGGATTTGCTCACAGCTG
GAGACCGTCACACTATCGTGAGACATATTTACTCAAAACTAACGGGTAAG
TTCCACCCTCTTTTTAGAATGTTCCAAAGTACTGCTTGCCCATACACATG
GCAATATACTCACAATCGAACGAAATGTAGCTCTCAACCTTAATGAAACC
ACACAACAGATGTACAAAAAAGCCATCTCATTTGAACTTGATGCATTTAC
AAGGGCTGAAACAGGCTGTTCTTATCTCGAATACTTGATAGGAATCATTG
GAGCTCTTCAGCCAGTGTGCATTGCAGAAGCTATACTGCCGCCGAGAGGG
ACTGTGGAACAGGTCCGGCAACCATTCTTGCAGCCTGATATTACAAACTT
GAGTTCTATATCGGAGCAAGGGTCATTCACCTCTGGTCAATAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:2239589..2240931+

>Ggra3856.t1 ID=Ggra3856.t1|Name=Ggra3856.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00000850_pilon:2239589..2240931+ (Gracilaria gracilis GNS1m male)
ATGAATACTTTTCAGCTGGAATGGTGCGGTGGATTGTCCAGAATAGATCG
CAAGCAGATTTGTTCTTCCGTATTGGCCTTCTTGAGACAAAACAACCCGG
CCGTCTCCTATCAGTTTCTTCTTCAACTTGCTGTCTCGCTCGAGGAAAGC
GCATACCACGAATCCGCCTGTCCCGTTTACTATGTTGAAACAGTCGTCAC
CAGATTGCATCAAGCACAGGCGTCCATATCCATAACGCCTCCCCGTCAGT
CTCCCGCTGTCGAACAACTTCCGTATCAGCACGCTCCGTATCAGCACGCT
CCATATCAGCACGCTCCTCATCCTCACGCTCCTCATCCTCACGCTCCTCA
TCAGCACACTCCTCAGCATGCATGGAGAAACAGTATTACTCGTGAAGAAC
GCAACGTAGTATTGCGCCATATGATACTTAAACTAACGAGCTTTAACGAA
GGAGAGTCTCCACGAGCAATCACCGAAGCAGCCACAGTTTTCGAGAACTG
CACTTACGTCAGCGTCGACTCAAAGTTTGCTTACCTCAGCTCTATAGCAG
AGGAGCTTAGTCGTTGTGAAGCGTGCCATACGTTGCCTGCACCGTCCGCG
GAAGTTCTTTCACTCTCCCTTCAGCAACAGTGTCAGAATCAACCTTGCGA
AACTCCACCCCAAATCACACAAACGCATGCCATTACAGATAGTCTACCTG
TTCCACCTACTCCGAACGGGCCTCAGAATATCTTAAATTTGGAGCCCGGC
GAGCTTATGTCTCACGTATTCGAACAACCGAACTGGAAGGATTTGCTCAC
AGCTGGAGACCGTCACACTATCGTGAGACATATTTACTCAAAACTAACGG
CTCTCAACCTTAATGAAACCACACAACAGATGTACAAAAAAGCCATCTCA
TTTGAACTTGATGCATTTACAAGGGCTGAAACAGGCTGTTCTTATCTCGA
ATACTTGATAGGAATCATTGGAGCTCTTCAGCCAGTGTGCATTGCAGAAG
CTATACTGCCGCCGAGAGGGACTGTGGAACAGGTCCGGCAACCATTCTTG
CAGCCTGATATTACAAACTTGAGTTCTATATCGGAGCAAGGGTCATTCAC
CTCTGGTCAATAG
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