Ggra3853.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3853.t1
Unique NameGgra3853.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2234056..2234727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog620914.JH621249_gene3255
PFAMsSpond_N
Max annot lvl976|Bacteroidetes
Evalue2.2e-16
EggNOG OGsKOG3539@1|root,32TPV@2|Bacteria,4NMI6@976|Bacteroidetes,1I1I5@117743|Flavobacteriia
DescriptionSpondin_N
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3853Ggra3853Gracilaria gracilis GNS1m malegenetig00000850_pilon 2234056..2234727 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3853.t1.start1Ggra3853.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2234056..2234058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3853.t1.CDS1Ggra3853.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2234056..2234727 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3853.t1.exon1Ggra3853.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2234056..2234727 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3853.t1.stop1Ggra3853.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2234725..2234727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3853.t1Ggra3853.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2234056..2234727 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3853.t1 ID=Ggra3853.t1|Name=Ggra3853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=224bp
MMKVFVAVFAAAALAHQVAAQCMGTAMYEVIFSNMLTPENFAFIPNFPEA
GVNFSPLAGVAHSNRISFLTVRGLASPQVEQIAETGMNGRFIKNAEHLMG
KGVKSVASGMLAGPGTNTTVKLMVDCENPFITAVSMVAPSPDWIVQVNNE
DTVDDDGSFVSRIDGSLIAYDAGTDDGDMFTPPTDASLDMPSEPPKNIAP
LVEDPTDPFGGEVIGFYVIKRMD*
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spliced messenger RNA

>Ggra3853.t1 ID=Ggra3853.t1|Name=Ggra3853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000850_pilon:2234056..2234727+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAAGGTTTTCGTTGCTGTTTTCGCTGCTGCTGCGCTCGCGCATCA
GGTGGCTGCCCAATGCATGGGAACCGCCATGTACGAAGTTATCTTTTCGA
ATATGCTGACTCCGGAGAACTTTGCATTCATCCCCAACTTCCCTGAAGCT
GGAGTGAACTTTTCGCCGCTTGCGGGGGTAGCCCATTCTAACCGCATATC
CTTCCTGACCGTTCGGGGACTTGCATCCCCTCAGGTAGAGCAGATCGCTG
AAACTGGAATGAATGGACGTTTCATCAAGAATGCTGAGCATTTGATGGGG
AAGGGAGTCAAGTCCGTTGCATCGGGAATGCTTGCCGGCCCTGGGACCAA
CACGACTGTGAAGTTGATGGTCGATTGTGAAAACCCATTCATCACCGCCG
TTTCTATGGTTGCCCCGTCTCCGGATTGGATTGTTCAGGTCAATAATGAG
GATACCGTGGATGACGACGGAAGCTTCGTTTCGCGTATTGATGGAAGTCT
CATTGCCTATGACGCCGGAACAGATGACGGCGATATGTTCACTCCCCCCA
CTGATGCAAGCTTGGACATGCCGTCTGAGCCACCAAAGAACATTGCCCCT
CTAGTTGAGGACCCCACTGATCCTTTCGGTGGTGAGGTGATTGGGTTTTA
CGTTATCAAGCGAATGGATTAG
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protein sequence of Ggra3853.t1

>Ggra3853.t1 ID=Ggra3853.t1|Name=Ggra3853.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=224bp
MMKVFVAVFAAAALAHQVAAQCMGTAMYEVIFSNMLTPENFAFIPNFPEA
GVNFSPLAGVAHSNRISFLTVRGLASPQVEQIAETGMNGRFIKNAEHLMG
KGVKSVASGMLAGPGTNTTVKLMVDCENPFITAVSMVAPSPDWIVQVNNE
DTVDDDGSFVSRIDGSLIAYDAGTDDGDMFTPPTDASLDMPSEPPKNIAP
LVEDPTDPFGGEVIGFYVIKRMD*
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mRNA from alignment at tig00000850_pilon:2234056..2234727+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3853.t1 ID=Ggra3853.t1|Name=Ggra3853.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000850_pilon:2234056..2234727+ (Gracilaria gracilis GNS1m male)
ATGATGAAGGTTTTCGTTGCTGTTTTCGCTGCTGCTGCGCTCGCGCATCA
GGTGGCTGCCCAATGCATGGGAACCGCCATGTACGAAGTTATCTTTTCGA
ATATGCTGACTCCGGAGAACTTTGCATTCATCCCCAACTTCCCTGAAGCT
GGAGTGAACTTTTCGCCGCTTGCGGGGGTAGCCCATTCTAACCGCATATC
CTTCCTGACCGTTCGGGGACTTGCATCCCCTCAGGTAGAGCAGATCGCTG
AAACTGGAATGAATGGACGTTTCATCAAGAATGCTGAGCATTTGATGGGG
AAGGGAGTCAAGTCCGTTGCATCGGGAATGCTTGCCGGCCCTGGGACCAA
CACGACTGTGAAGTTGATGGTCGATTGTGAAAACCCATTCATCACCGCCG
TTTCTATGGTTGCCCCGTCTCCGGATTGGATTGTTCAGGTCAATAATGAG
GATACCGTGGATGACGACGGAAGCTTCGTTTCGCGTATTGATGGAAGTCT
CATTGCCTATGACGCCGGAACAGATGACGGCGATATGTTCACTCCCCCCA
CTGATGCAAGCTTGGACATGCCGTCTGAGCCACCAAAGAACATTGCCCCT
CTAGTTGAGGACCCCACTGATCCTTTCGGTGGTGAGGTGATTGGGTTTTA
CGTTATCAAGCGAATGGATTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:2234056..2234727+

>Ggra3853.t1 ID=Ggra3853.t1|Name=Ggra3853.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00000850_pilon:2234056..2234727+ (Gracilaria gracilis GNS1m male)
ATGATGAAGGTTTTCGTTGCTGTTTTCGCTGCTGCTGCGCTCGCGCATCA
GGTGGCTGCCCAATGCATGGGAACCGCCATGTACGAAGTTATCTTTTCGA
ATATGCTGACTCCGGAGAACTTTGCATTCATCCCCAACTTCCCTGAAGCT
GGAGTGAACTTTTCGCCGCTTGCGGGGGTAGCCCATTCTAACCGCATATC
CTTCCTGACCGTTCGGGGACTTGCATCCCCTCAGGTAGAGCAGATCGCTG
AAACTGGAATGAATGGACGTTTCATCAAGAATGCTGAGCATTTGATGGGG
AAGGGAGTCAAGTCCGTTGCATCGGGAATGCTTGCCGGCCCTGGGACCAA
CACGACTGTGAAGTTGATGGTCGATTGTGAAAACCCATTCATCACCGCCG
TTTCTATGGTTGCCCCGTCTCCGGATTGGATTGTTCAGGTCAATAATGAG
GATACCGTGGATGACGACGGAAGCTTCGTTTCGCGTATTGATGGAAGTCT
CATTGCCTATGACGCCGGAACAGATGACGGCGATATGTTCACTCCCCCCA
CTGATGCAAGCTTGGACATGCCGTCTGAGCCACCAAAGAACATTGCCCCT
CTAGTTGAGGACCCCACTGATCCTTTCGGTGGTGAGGTGATTGGGTTTTA
CGTTATCAAGCGAATGGATTAG
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