Ggra3847.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3847.t1
Unique Name	Ggra3847.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	810

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:2213131..2215560 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010692941.1
PFAMs	COG7
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20294
Evalue	1.42e-34
EggNOG OGs	KOG4182@1\|root,KOG4182@2759\|Eukaryota,37NHZ@33090\|Viridiplantae,3GCJC@35493\|Streptophyta
Description	Conserved oligomeric Golgi complex subunit
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3847	Ggra3847	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 2213131..2215560 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3847.t1.stop1	Ggra3847.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 2213131..2213133 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3847.t1.CDS1	Ggra3847.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 2213131..2215560 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3847.t1.exon1	Ggra3847.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 2213131..2215560 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3847.t1.start1	Ggra3847.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 2215558..2215560 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3847.t1	Ggra3847.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 2213131..2215560 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:2213131..2215560-
coding sequence from alignment at tig00000850_pilon:2213131..2215560-

mRNA sequence

>Ggra3847.t1 ID=Ggra3847.t1|Name=Ggra3847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp
MSADAPLPRSHDFDLDPDSFHPSTWLNAVLSHTQTNQSTLTLNQLLDAAN
DAIRDAHSTLDQSLKSALSAIPWVVRETERVRQRATTLRTSVDGVGERVA
GVETSVVSSVKTIADADTVVRRVQDAAHLLSTAVTVDTLLDRLSSLLASS
AVDGADLVQAADLVSQLRTSLLPLRQISEFNSRVTQLEEADASLEQLAKP
QLQRALEQRNTSAARNARIVYDHAGRENAFRTQYGSLRAAEVRSLWSRAW
SVLLEDRDEDNDALRSRNLEANLCSPKSDGALQSFYDKLEDMLVAERTWL
LEAFPDLCDIVLPELVSESMCGLSPPLVVKAGDNADVNLYSVALRSIFSS
GRIGRVFLPSVLDNVVEAEGANDENPDVDSEVVLAIQDAISSLLLPYRRF
WDNFSLISVQSARKLARNIKLNALDSVSRAAQSEAGSDVNRPGLGLVAKD
VDTLSKDALTLLDSSLSILTERTCGIGIDVMKRTSSAIASELSERIIDVL
NMPSSLQNTDEWTKINDVLRLLTSTSILKRTWDGKKESLFAIAIGTATPV
LEVTSVVQASRKKRIHQFVTQAETSPAEAGIVWELVRDSGLANRTVSEFE
LLDSADDFRDLIDRVHRIVYESMFNGVRDRFKAFNADDFWNVDGDDETLA
SVSSSPLAYATEVADYLMTIPQQLEPFIPDEEDARYAMPKSPYVFCKRNG
NVDEELSFAGMWISVLTIATMEFYVERVCNLSRLSEGGTRQLATDVDYIC
NVIASLGVSPSPEMALICKLLEAKSDRISFLKAIEGYTTMDHKKLSRRIA
ALRGISVSL*

spliced messenger RNA

>Ggra3847.t1 ID=Ggra3847.t1|Name=Ggra3847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2430bp|location=Sequence derived from alignment at tig00000850_pilon:2213131..2215560- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCGATGCCCCCCTGCCTCGATCTCATGATTTCGACTTGGACCC
AGACTCATTCCATCCTTCAACATGGCTGAACGCTGTCTTGTCTCACACAC
AGACGAACCAAAGCACCCTTACCCTGAACCAGCTACTTGATGCTGCAAAC
GATGCCATTCGGGACGCACATTCAACCCTAGATCAGTCTCTAAAGTCTGC
TTTATCCGCAATCCCATGGGTCGTGCGAGAAACTGAGCGTGTCCGTCAGC
GTGCTACTACTCTGCGTACAAGTGTTGATGGCGTTGGTGAAAGAGTTGCT
GGCGTTGAAACTTCTGTCGTATCAAGCGTGAAAACTATCGCCGATGCCGA
CACGGTTGTTCGCCGCGTGCAGGACGCTGCTCATTTGCTCAGCACTGCTG
TCACTGTCGACACACTGCTTGATCGGCTCTCATCATTGTTAGCTTCTTCA
GCGGTAGATGGAGCTGATCTCGTACAGGCAGCAGATCTCGTCTCTCAACT
TCGCACATCGCTGCTCCCATTACGGCAGATATCAGAGTTCAACTCCCGAG
TCACTCAACTTGAAGAAGCGGATGCCTCTCTTGAGCAACTTGCAAAACCG
CAACTACAACGAGCTTTGGAGCAACGCAACACTTCCGCTGCACGTAATGC
ACGTATAGTCTATGACCATGCAGGGCGCGAAAACGCATTTCGCACCCAAT
ACGGGTCACTTCGTGCAGCCGAGGTTCGAAGTCTTTGGTCTAGAGCATGG
TCGGTACTGTTGGAAGATAGAGACGAAGACAATGACGCCCTCAGGTCTCG
CAATCTTGAGGCAAACCTATGTTCCCCTAAATCTGATGGTGCACTGCAGT
CCTTTTACGATAAGCTCGAAGATATGCTTGTTGCGGAACGCACGTGGCTC
CTCGAGGCCTTCCCCGATCTCTGCGATATAGTTCTACCGGAGTTGGTGTC
GGAAAGTATGTGTGGTCTTTCGCCTCCTCTCGTCGTGAAGGCTGGGGATA
ACGCCGACGTCAATCTGTATTCAGTCGCGCTCCGCAGCATATTTTCGAGT
GGCAGAATCGGCCGCGTCTTCCTTCCCAGCGTTCTAGACAACGTTGTGGA
GGCCGAAGGAGCAAACGACGAAAATCCTGACGTAGATAGCGAGGTTGTCC
TTGCTATTCAGGATGCCATTTCTTCTCTCCTGCTTCCCTATCGAAGGTTC
TGGGATAATTTCTCCTTGATTTCTGTTCAAAGCGCTCGAAAACTGGCGCG
CAACATAAAGCTCAATGCTTTAGACTCTGTCAGCCGCGCAGCACAATCGG
AAGCTGGGTCAGATGTAAACCGACCCGGTCTCGGCCTTGTCGCCAAAGAT
GTGGATACTCTATCAAAGGATGCTCTTACACTGCTGGACAGCTCCTTGTC
AATTCTCACTGAGCGTACTTGTGGTATCGGAATTGATGTCATGAAAAGGA
CAAGCAGTGCTATTGCATCAGAACTCTCAGAACGGATAATTGATGTACTC
AATATGCCATCTAGCTTGCAAAACACAGACGAGTGGACCAAGATTAACGA
TGTTCTTCGTCTATTGACATCCACAAGTATACTGAAAAGGACATGGGACG
GAAAGAAAGAATCATTGTTTGCCATAGCAATTGGAACCGCCACACCTGTC
TTAGAAGTTACCTCAGTAGTACAAGCTTCACGCAAAAAGAGAATTCATCA
ATTTGTCACTCAGGCTGAAACAAGTCCTGCTGAAGCTGGCATTGTATGGG
AACTTGTGCGCGACTCTGGGCTTGCCAACAGGACTGTTTCGGAATTTGAA
CTGTTGGACAGCGCCGATGACTTCAGAGATCTAATTGATAGAGTACATCG
TATTGTGTATGAAAGCATGTTCAACGGGGTCAGAGACCGATTCAAGGCCT
TCAACGCTGATGACTTCTGGAATGTTGACGGCGATGACGAAACGTTAGCC
AGTGTATCTAGTTCTCCTTTGGCCTATGCAACTGAAGTAGCAGATTACCT
AATGACTATTCCGCAGCAACTTGAACCCTTCATCCCTGACGAAGAAGACG
CTCGTTATGCCATGCCAAAGTCACCGTATGTGTTTTGCAAACGTAATGGA
AATGTTGATGAAGAGCTCTCCTTTGCAGGAATGTGGATATCTGTGCTCAC
TATTGCCACAATGGAATTTTACGTAGAGAGGGTATGTAACTTGTCACGCC
TTTCAGAAGGAGGAACTCGCCAACTAGCCACGGACGTTGATTACATATGT
AACGTGATTGCATCTCTGGGAGTTTCACCTTCTCCCGAAATGGCTCTAAT
TTGTAAGCTTCTAGAAGCAAAGTCAGATAGAATCTCTTTTCTCAAGGCTA
TTGAAGGATATACTACTATGGACCATAAGAAGCTTTCTCGGCGAATTGCA
GCATTAAGAGGTATCAGTGTGTCCTTGTAA

protein sequence of Ggra3847.t1

>Ggra3847.t1 ID=Ggra3847.t1|Name=Ggra3847.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=810bp
MSADAPLPRSHDFDLDPDSFHPSTWLNAVLSHTQTNQSTLTLNQLLDAAN
DAIRDAHSTLDQSLKSALSAIPWVVRETERVRQRATTLRTSVDGVGERVA
GVETSVVSSVKTIADADTVVRRVQDAAHLLSTAVTVDTLLDRLSSLLASS
AVDGADLVQAADLVSQLRTSLLPLRQISEFNSRVTQLEEADASLEQLAKP
QLQRALEQRNTSAARNARIVYDHAGRENAFRTQYGSLRAAEVRSLWSRAW
SVLLEDRDEDNDALRSRNLEANLCSPKSDGALQSFYDKLEDMLVAERTWL
LEAFPDLCDIVLPELVSESMCGLSPPLVVKAGDNADVNLYSVALRSIFSS
GRIGRVFLPSVLDNVVEAEGANDENPDVDSEVVLAIQDAISSLLLPYRRF
WDNFSLISVQSARKLARNIKLNALDSVSRAAQSEAGSDVNRPGLGLVAKD
VDTLSKDALTLLDSSLSILTERTCGIGIDVMKRTSSAIASELSERIIDVL
NMPSSLQNTDEWTKINDVLRLLTSTSILKRTWDGKKESLFAIAIGTATPV
LEVTSVVQASRKKRIHQFVTQAETSPAEAGIVWELVRDSGLANRTVSEFE
LLDSADDFRDLIDRVHRIVYESMFNGVRDRFKAFNADDFWNVDGDDETLA
SVSSSPLAYATEVADYLMTIPQQLEPFIPDEEDARYAMPKSPYVFCKRNG
NVDEELSFAGMWISVLTIATMEFYVERVCNLSRLSEGGTRQLATDVDYIC
NVIASLGVSPSPEMALICKLLEAKSDRISFLKAIEGYTTMDHKKLSRRIA
ALRGISVSL*

mRNA from alignment at tig00000850_pilon:2213131..2215560-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3847.t1 ID=Ggra3847.t1|Name=Ggra3847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2430bp|location=Sequence derived from alignment at tig00000850_pilon:2213131..2215560- (Gracilaria gracilis GNS1m male)
ATGTCGGCCGATGCCCCCCTGCCTCGATCTCATGATTTCGACTTGGACCC
AGACTCATTCCATCCTTCAACATGGCTGAACGCTGTCTTGTCTCACACAC
AGACGAACCAAAGCACCCTTACCCTGAACCAGCTACTTGATGCTGCAAAC
GATGCCATTCGGGACGCACATTCAACCCTAGATCAGTCTCTAAAGTCTGC
TTTATCCGCAATCCCATGGGTCGTGCGAGAAACTGAGCGTGTCCGTCAGC
GTGCTACTACTCTGCGTACAAGTGTTGATGGCGTTGGTGAAAGAGTTGCT
GGCGTTGAAACTTCTGTCGTATCAAGCGTGAAAACTATCGCCGATGCCGA
CACGGTTGTTCGCCGCGTGCAGGACGCTGCTCATTTGCTCAGCACTGCTG
TCACTGTCGACACACTGCTTGATCGGCTCTCATCATTGTTAGCTTCTTCA
GCGGTAGATGGAGCTGATCTCGTACAGGCAGCAGATCTCGTCTCTCAACT
TCGCACATCGCTGCTCCCATTACGGCAGATATCAGAGTTCAACTCCCGAG
TCACTCAACTTGAAGAAGCGGATGCCTCTCTTGAGCAACTTGCAAAACCG
CAACTACAACGAGCTTTGGAGCAACGCAACACTTCCGCTGCACGTAATGC
ACGTATAGTCTATGACCATGCAGGGCGCGAAAACGCATTTCGCACCCAAT
ACGGGTCACTTCGTGCAGCCGAGGTTCGAAGTCTTTGGTCTAGAGCATGG
TCGGTACTGTTGGAAGATAGAGACGAAGACAATGACGCCCTCAGGTCTCG
CAATCTTGAGGCAAACCTATGTTCCCCTAAATCTGATGGTGCACTGCAGT
CCTTTTACGATAAGCTCGAAGATATGCTTGTTGCGGAACGCACGTGGCTC
CTCGAGGCCTTCCCCGATCTCTGCGATATAGTTCTACCGGAGTTGGTGTC
GGAAAGTATGTGTGGTCTTTCGCCTCCTCTCGTCGTGAAGGCTGGGGATA
ACGCCGACGTCAATCTGTATTCAGTCGCGCTCCGCAGCATATTTTCGAGT
GGCAGAATCGGCCGCGTCTTCCTTCCCAGCGTTCTAGACAACGTTGTGGA
GGCCGAAGGAGCAAACGACGAAAATCCTGACGTAGATAGCGAGGTTGTCC
TTGCTATTCAGGATGCCATTTCTTCTCTCCTGCTTCCCTATCGAAGGTTC
TGGGATAATTTCTCCTTGATTTCTGTTCAAAGCGCTCGAAAACTGGCGCG
CAACATAAAGCTCAATGCTTTAGACTCTGTCAGCCGCGCAGCACAATCGG
AAGCTGGGTCAGATGTAAACCGACCCGGTCTCGGCCTTGTCGCCAAAGAT
GTGGATACTCTATCAAAGGATGCTCTTACACTGCTGGACAGCTCCTTGTC
AATTCTCACTGAGCGTACTTGTGGTATCGGAATTGATGTCATGAAAAGGA
CAAGCAGTGCTATTGCATCAGAACTCTCAGAACGGATAATTGATGTACTC
AATATGCCATCTAGCTTGCAAAACACAGACGAGTGGACCAAGATTAACGA
TGTTCTTCGTCTATTGACATCCACAAGTATACTGAAAAGGACATGGGACG
GAAAGAAAGAATCATTGTTTGCCATAGCAATTGGAACCGCCACACCTGTC
TTAGAAGTTACCTCAGTAGTACAAGCTTCACGCAAAAAGAGAATTCATCA
ATTTGTCACTCAGGCTGAAACAAGTCCTGCTGAAGCTGGCATTGTATGGG
AACTTGTGCGCGACTCTGGGCTTGCCAACAGGACTGTTTCGGAATTTGAA
CTGTTGGACAGCGCCGATGACTTCAGAGATCTAATTGATAGAGTACATCG
TATTGTGTATGAAAGCATGTTCAACGGGGTCAGAGACCGATTCAAGGCCT
TCAACGCTGATGACTTCTGGAATGTTGACGGCGATGACGAAACGTTAGCC
AGTGTATCTAGTTCTCCTTTGGCCTATGCAACTGAAGTAGCAGATTACCT
AATGACTATTCCGCAGCAACTTGAACCCTTCATCCCTGACGAAGAAGACG
CTCGTTATGCCATGCCAAAGTCACCGTATGTGTTTTGCAAACGTAATGGA
AATGTTGATGAAGAGCTCTCCTTTGCAGGAATGTGGATATCTGTGCTCAC
TATTGCCACAATGGAATTTTACGTAGAGAGGGTATGTAACTTGTCACGCC
TTTCAGAAGGAGGAACTCGCCAACTAGCCACGGACGTTGATTACATATGT
AACGTGATTGCATCTCTGGGAGTTTCACCTTCTCCCGAAATGGCTCTAAT
TTGTAAGCTTCTAGAAGCAAAGTCAGATAGAATCTCTTTTCTCAAGGCTA
TTGAAGGATATACTACTATGGACCATAAGAAGCTTTCTCGGCGAATTGCA
GCATTAAGAGGTATCAGTGTGTCCTTGTAA

Coding sequence (CDS) from alignment at tig00000850_pilon:2213131..2215560-

>Ggra3847.t1 ID=Ggra3847.t1|Name=Ggra3847.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2430bp|location=Sequence derived from alignment at tig00000850_pilon:2213131..2215560- (Gracilaria gracilis GNS1m male)
ATGTCGGCCGATGCCCCCCTGCCTCGATCTCATGATTTCGACTTGGACCC
AGACTCATTCCATCCTTCAACATGGCTGAACGCTGTCTTGTCTCACACAC
AGACGAACCAAAGCACCCTTACCCTGAACCAGCTACTTGATGCTGCAAAC
GATGCCATTCGGGACGCACATTCAACCCTAGATCAGTCTCTAAAGTCTGC
TTTATCCGCAATCCCATGGGTCGTGCGAGAAACTGAGCGTGTCCGTCAGC
GTGCTACTACTCTGCGTACAAGTGTTGATGGCGTTGGTGAAAGAGTTGCT
GGCGTTGAAACTTCTGTCGTATCAAGCGTGAAAACTATCGCCGATGCCGA
CACGGTTGTTCGCCGCGTGCAGGACGCTGCTCATTTGCTCAGCACTGCTG
TCACTGTCGACACACTGCTTGATCGGCTCTCATCATTGTTAGCTTCTTCA
GCGGTAGATGGAGCTGATCTCGTACAGGCAGCAGATCTCGTCTCTCAACT
TCGCACATCGCTGCTCCCATTACGGCAGATATCAGAGTTCAACTCCCGAG
TCACTCAACTTGAAGAAGCGGATGCCTCTCTTGAGCAACTTGCAAAACCG
CAACTACAACGAGCTTTGGAGCAACGCAACACTTCCGCTGCACGTAATGC
ACGTATAGTCTATGACCATGCAGGGCGCGAAAACGCATTTCGCACCCAAT
ACGGGTCACTTCGTGCAGCCGAGGTTCGAAGTCTTTGGTCTAGAGCATGG
TCGGTACTGTTGGAAGATAGAGACGAAGACAATGACGCCCTCAGGTCTCG
CAATCTTGAGGCAAACCTATGTTCCCCTAAATCTGATGGTGCACTGCAGT
CCTTTTACGATAAGCTCGAAGATATGCTTGTTGCGGAACGCACGTGGCTC
CTCGAGGCCTTCCCCGATCTCTGCGATATAGTTCTACCGGAGTTGGTGTC
GGAAAGTATGTGTGGTCTTTCGCCTCCTCTCGTCGTGAAGGCTGGGGATA
ACGCCGACGTCAATCTGTATTCAGTCGCGCTCCGCAGCATATTTTCGAGT
GGCAGAATCGGCCGCGTCTTCCTTCCCAGCGTTCTAGACAACGTTGTGGA
GGCCGAAGGAGCAAACGACGAAAATCCTGACGTAGATAGCGAGGTTGTCC
TTGCTATTCAGGATGCCATTTCTTCTCTCCTGCTTCCCTATCGAAGGTTC
TGGGATAATTTCTCCTTGATTTCTGTTCAAAGCGCTCGAAAACTGGCGCG
CAACATAAAGCTCAATGCTTTAGACTCTGTCAGCCGCGCAGCACAATCGG
AAGCTGGGTCAGATGTAAACCGACCCGGTCTCGGCCTTGTCGCCAAAGAT
GTGGATACTCTATCAAAGGATGCTCTTACACTGCTGGACAGCTCCTTGTC
AATTCTCACTGAGCGTACTTGTGGTATCGGAATTGATGTCATGAAAAGGA
CAAGCAGTGCTATTGCATCAGAACTCTCAGAACGGATAATTGATGTACTC
AATATGCCATCTAGCTTGCAAAACACAGACGAGTGGACCAAGATTAACGA
TGTTCTTCGTCTATTGACATCCACAAGTATACTGAAAAGGACATGGGACG
GAAAGAAAGAATCATTGTTTGCCATAGCAATTGGAACCGCCACACCTGTC
TTAGAAGTTACCTCAGTAGTACAAGCTTCACGCAAAAAGAGAATTCATCA
ATTTGTCACTCAGGCTGAAACAAGTCCTGCTGAAGCTGGCATTGTATGGG
AACTTGTGCGCGACTCTGGGCTTGCCAACAGGACTGTTTCGGAATTTGAA
CTGTTGGACAGCGCCGATGACTTCAGAGATCTAATTGATAGAGTACATCG
TATTGTGTATGAAAGCATGTTCAACGGGGTCAGAGACCGATTCAAGGCCT
TCAACGCTGATGACTTCTGGAATGTTGACGGCGATGACGAAACGTTAGCC
AGTGTATCTAGTTCTCCTTTGGCCTATGCAACTGAAGTAGCAGATTACCT
AATGACTATTCCGCAGCAACTTGAACCCTTCATCCCTGACGAAGAAGACG
CTCGTTATGCCATGCCAAAGTCACCGTATGTGTTTTGCAAACGTAATGGA
AATGTTGATGAAGAGCTCTCCTTTGCAGGAATGTGGATATCTGTGCTCAC
TATTGCCACAATGGAATTTTACGTAGAGAGGGTATGTAACTTGTCACGCC
TTTCAGAAGGAGGAACTCGCCAACTAGCCACGGACGTTGATTACATATGT
AACGTGATTGCATCTCTGGGAGTTTCACCTTCTCCCGAAATGGCTCTAAT
TTGTAAGCTTCTAGAAGCAAAGTCAGATAGAATCTCTTTTCTCAAGGCTA
TTGAAGGATATACTACTATGGACCATAAGAAGCTTTCTCGGCGAATTGCA
GCATTAAGAGGTATCAGTGTGTCCTTGTAA