Ggra3843.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3843.t1
Unique NameGgra3843.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2203999..2205498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4641.GSMUA_Achr11P07310_001
PFAMsGlyco_transf_92
Max annot lvl35493|Streptophyta
Evalue6.12e-13
EggNOG OGsCOG0463@1|root,2QTF9@2759|Eukaryota,37N9S@33090|Viridiplantae,3GBHN@35493|Streptophyta,3KVVU@4447|Liliopsida
DescriptionGlycosyltransferase family 92
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3843Ggra3843Gracilaria gracilis GNS1m malegenetig00000850_pilon 2203999..2205498 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3843.t1.start1Ggra3843.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2203999..2204001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3843.t1.CDS1Ggra3843.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2203999..2205498 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3843.t1.exon1Ggra3843.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2203999..2205498 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3843.t1.stop1Ggra3843.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2205496..2205498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3843.t1Ggra3843.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2203999..2205498 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3843.t1 ID=Ggra3843.t1|Name=Ggra3843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp
MHLKKPRQTSGFKYLLPVLFLPTIFIPILNRPPPSLPPPLAPLTSQFTVT
YPPTFNDWKRPLTIAAYARRINSKYELSLFTTGVNARSFSRSFRVFGCLI
GNVPISPIQSFPELTVCEVDPDLLAHNTPLSILLYDDDNLGDAMESSFIN
KRENFTIFPGDVIPYQPIDTYEIDEELASIRTSVQWSEDLLDIENGLRYE
LCLMTAMRHESHLLPGWIEYYRRMGVDHFYIYENNAETPLDLRMYAHFVE
VVRWPWSRSQMQNNNHFLKASAGRCKYVAFFDVDEYAMVGDVRPGALRSF
VFQKTFMEGYQQISFPFLNMVNNGYVRRPTGYLPELYTTREKNQSSRLGK
VLIDTDNKWVWHGVHNVKASTNYTIRAYWNQTREYEPTSMMHNSMLVHFT
HRSWEEYCAKNKAGGASTLTAMPEREMNVSNPDPKYMERDGEEFVFFRNL
WREVMKHPDRKGITLMWKNIKGERCSQLYCPNCIFLRLGHAQCLDDYAF*
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spliced messenger RNA

>Ggra3843.t1 ID=Ggra3843.t1|Name=Ggra3843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000850_pilon:2203999..2205498+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCTAAAAAAGCCAAGACAGACTTCAGGTTTCAAATACCTTTTGCC
TGTCCTTTTTCTCCCGACGATATTCATACCAATATTGAACCGCCCTCCTC
CAAGCTTACCGCCCCCTCTAGCTCCTCTGACTTCTCAGTTTACAGTAACA
TACCCCCCCACTTTCAATGACTGGAAACGCCCGCTCACCATTGCAGCGTA
TGCTCGGAGAATCAACTCCAAATATGAGCTTTCCTTGTTCACGACTGGAG
TCAATGCCCGTTCCTTTAGTCGAAGCTTTAGAGTCTTCGGTTGTTTGATT
GGGAACGTGCCCATAAGCCCAATTCAATCATTTCCAGAACTCACAGTGTG
TGAGGTGGACCCCGACCTTCTAGCCCACAACACTCCACTTTCCATATTGC
TATACGATGACGATAATCTTGGAGATGCCATGGAATCAAGCTTCATCAAT
AAGCGTGAGAACTTCACCATCTTTCCTGGAGACGTTATTCCATATCAACC
CATTGACACGTACGAAATAGACGAGGAGTTGGCTTCCATCCGCACATCGG
TGCAATGGAGCGAAGATCTTCTTGATATTGAAAACGGCCTGAGATACGAG
CTGTGCCTTATGACCGCAATGCGCCATGAGTCGCATCTGCTTCCCGGATG
GATCGAGTACTACCGGAGAATGGGCGTAGACCATTTCTACATCTATGAGA
ACAATGCAGAAACCCCACTTGATCTCAGAATGTATGCCCATTTCGTGGAG
GTAGTGCGCTGGCCCTGGTCTCGATCTCAGATGCAGAACAACAATCACTT
CCTGAAAGCATCGGCAGGTCGATGCAAGTATGTCGCATTCTTCGATGTTG
ATGAATATGCAATGGTTGGTGATGTTCGACCTGGTGCCCTCAGGAGTTTC
GTGTTCCAAAAGACTTTCATGGAAGGGTATCAGCAGATTTCGTTTCCTTT
CTTGAACATGGTCAACAATGGATATGTTCGCCGCCCAACAGGATATTTAC
CAGAGCTTTATACAACCAGAGAAAAGAATCAGAGTTCTAGACTTGGGAAA
GTACTCATAGACACAGATAACAAGTGGGTGTGGCATGGCGTGCACAACGT
AAAAGCCTCGACAAACTACACAATCCGTGCGTATTGGAATCAGACACGAG
AATATGAACCCACGTCGATGATGCACAACTCCATGCTTGTACACTTCACA
CATAGAAGCTGGGAAGAATACTGTGCAAAGAATAAAGCCGGTGGTGCAAG
CACCTTAACAGCCATGCCCGAACGGGAAATGAATGTAAGCAACCCTGACC
CGAAGTACATGGAAAGAGATGGAGAGGAGTTTGTCTTCTTTCGCAATTTG
TGGCGTGAGGTGATGAAGCATCCAGATCGTAAAGGGATAACTCTCATGTG
GAAGAACATCAAGGGCGAGCGGTGTAGCCAACTGTATTGCCCGAATTGCA
TATTCCTTCGCTTAGGACACGCCCAATGCTTGGATGACTACGCCTTTTAA
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protein sequence of Ggra3843.t1

>Ggra3843.t1 ID=Ggra3843.t1|Name=Ggra3843.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MHLKKPRQTSGFKYLLPVLFLPTIFIPILNRPPPSLPPPLAPLTSQFTVT
YPPTFNDWKRPLTIAAYARRINSKYELSLFTTGVNARSFSRSFRVFGCLI
GNVPISPIQSFPELTVCEVDPDLLAHNTPLSILLYDDDNLGDAMESSFIN
KRENFTIFPGDVIPYQPIDTYEIDEELASIRTSVQWSEDLLDIENGLRYE
LCLMTAMRHESHLLPGWIEYYRRMGVDHFYIYENNAETPLDLRMYAHFVE
VVRWPWSRSQMQNNNHFLKASAGRCKYVAFFDVDEYAMVGDVRPGALRSF
VFQKTFMEGYQQISFPFLNMVNNGYVRRPTGYLPELYTTREKNQSSRLGK
VLIDTDNKWVWHGVHNVKASTNYTIRAYWNQTREYEPTSMMHNSMLVHFT
HRSWEEYCAKNKAGGASTLTAMPEREMNVSNPDPKYMERDGEEFVFFRNL
WREVMKHPDRKGITLMWKNIKGERCSQLYCPNCIFLRLGHAQCLDDYAF*
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mRNA from alignment at tig00000850_pilon:2203999..2205498+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3843.t1 ID=Ggra3843.t1|Name=Ggra3843.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000850_pilon:2203999..2205498+ (Gracilaria gracilis GNS1m male)
ATGCATCTAAAAAAGCCAAGACAGACTTCAGGTTTCAAATACCTTTTGCC
TGTCCTTTTTCTCCCGACGATATTCATACCAATATTGAACCGCCCTCCTC
CAAGCTTACCGCCCCCTCTAGCTCCTCTGACTTCTCAGTTTACAGTAACA
TACCCCCCCACTTTCAATGACTGGAAACGCCCGCTCACCATTGCAGCGTA
TGCTCGGAGAATCAACTCCAAATATGAGCTTTCCTTGTTCACGACTGGAG
TCAATGCCCGTTCCTTTAGTCGAAGCTTTAGAGTCTTCGGTTGTTTGATT
GGGAACGTGCCCATAAGCCCAATTCAATCATTTCCAGAACTCACAGTGTG
TGAGGTGGACCCCGACCTTCTAGCCCACAACACTCCACTTTCCATATTGC
TATACGATGACGATAATCTTGGAGATGCCATGGAATCAAGCTTCATCAAT
AAGCGTGAGAACTTCACCATCTTTCCTGGAGACGTTATTCCATATCAACC
CATTGACACGTACGAAATAGACGAGGAGTTGGCTTCCATCCGCACATCGG
TGCAATGGAGCGAAGATCTTCTTGATATTGAAAACGGCCTGAGATACGAG
CTGTGCCTTATGACCGCAATGCGCCATGAGTCGCATCTGCTTCCCGGATG
GATCGAGTACTACCGGAGAATGGGCGTAGACCATTTCTACATCTATGAGA
ACAATGCAGAAACCCCACTTGATCTCAGAATGTATGCCCATTTCGTGGAG
GTAGTGCGCTGGCCCTGGTCTCGATCTCAGATGCAGAACAACAATCACTT
CCTGAAAGCATCGGCAGGTCGATGCAAGTATGTCGCATTCTTCGATGTTG
ATGAATATGCAATGGTTGGTGATGTTCGACCTGGTGCCCTCAGGAGTTTC
GTGTTCCAAAAGACTTTCATGGAAGGGTATCAGCAGATTTCGTTTCCTTT
CTTGAACATGGTCAACAATGGATATGTTCGCCGCCCAACAGGATATTTAC
CAGAGCTTTATACAACCAGAGAAAAGAATCAGAGTTCTAGACTTGGGAAA
GTACTCATAGACACAGATAACAAGTGGGTGTGGCATGGCGTGCACAACGT
AAAAGCCTCGACAAACTACACAATCCGTGCGTATTGGAATCAGACACGAG
AATATGAACCCACGTCGATGATGCACAACTCCATGCTTGTACACTTCACA
CATAGAAGCTGGGAAGAATACTGTGCAAAGAATAAAGCCGGTGGTGCAAG
CACCTTAACAGCCATGCCCGAACGGGAAATGAATGTAAGCAACCCTGACC
CGAAGTACATGGAAAGAGATGGAGAGGAGTTTGTCTTCTTTCGCAATTTG
TGGCGTGAGGTGATGAAGCATCCAGATCGTAAAGGGATAACTCTCATGTG
GAAGAACATCAAGGGCGAGCGGTGTAGCCAACTGTATTGCCCGAATTGCA
TATTCCTTCGCTTAGGACACGCCCAATGCTTGGATGACTACGCCTTTTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2203999..2205498+

>Ggra3843.t1 ID=Ggra3843.t1|Name=Ggra3843.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00000850_pilon:2203999..2205498+ (Gracilaria gracilis GNS1m male)
ATGCATCTAAAAAAGCCAAGACAGACTTCAGGTTTCAAATACCTTTTGCC
TGTCCTTTTTCTCCCGACGATATTCATACCAATATTGAACCGCCCTCCTC
CAAGCTTACCGCCCCCTCTAGCTCCTCTGACTTCTCAGTTTACAGTAACA
TACCCCCCCACTTTCAATGACTGGAAACGCCCGCTCACCATTGCAGCGTA
TGCTCGGAGAATCAACTCCAAATATGAGCTTTCCTTGTTCACGACTGGAG
TCAATGCCCGTTCCTTTAGTCGAAGCTTTAGAGTCTTCGGTTGTTTGATT
GGGAACGTGCCCATAAGCCCAATTCAATCATTTCCAGAACTCACAGTGTG
TGAGGTGGACCCCGACCTTCTAGCCCACAACACTCCACTTTCCATATTGC
TATACGATGACGATAATCTTGGAGATGCCATGGAATCAAGCTTCATCAAT
AAGCGTGAGAACTTCACCATCTTTCCTGGAGACGTTATTCCATATCAACC
CATTGACACGTACGAAATAGACGAGGAGTTGGCTTCCATCCGCACATCGG
TGCAATGGAGCGAAGATCTTCTTGATATTGAAAACGGCCTGAGATACGAG
CTGTGCCTTATGACCGCAATGCGCCATGAGTCGCATCTGCTTCCCGGATG
GATCGAGTACTACCGGAGAATGGGCGTAGACCATTTCTACATCTATGAGA
ACAATGCAGAAACCCCACTTGATCTCAGAATGTATGCCCATTTCGTGGAG
GTAGTGCGCTGGCCCTGGTCTCGATCTCAGATGCAGAACAACAATCACTT
CCTGAAAGCATCGGCAGGTCGATGCAAGTATGTCGCATTCTTCGATGTTG
ATGAATATGCAATGGTTGGTGATGTTCGACCTGGTGCCCTCAGGAGTTTC
GTGTTCCAAAAGACTTTCATGGAAGGGTATCAGCAGATTTCGTTTCCTTT
CTTGAACATGGTCAACAATGGATATGTTCGCCGCCCAACAGGATATTTAC
CAGAGCTTTATACAACCAGAGAAAAGAATCAGAGTTCTAGACTTGGGAAA
GTACTCATAGACACAGATAACAAGTGGGTGTGGCATGGCGTGCACAACGT
AAAAGCCTCGACAAACTACACAATCCGTGCGTATTGGAATCAGACACGAG
AATATGAACCCACGTCGATGATGCACAACTCCATGCTTGTACACTTCACA
CATAGAAGCTGGGAAGAATACTGTGCAAAGAATAAAGCCGGTGGTGCAAG
CACCTTAACAGCCATGCCCGAACGGGAAATGAATGTAAGCAACCCTGACC
CGAAGTACATGGAAAGAGATGGAGAGGAGTTTGTCTTCTTTCGCAATTTG
TGGCGTGAGGTGATGAAGCATCCAGATCGTAAAGGGATAACTCTCATGTG
GAAGAACATCAAGGGCGAGCGGTGTAGCCAACTGTATTGCCCGAATTGCA
TATTCCTTCGCTTAGGACACGCCCAATGCTTGGATGACTACGCCTTTTAA
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