Ggra3840.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3840.t1
Unique NameGgra3840.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2197249..2198918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005648793.1
PFAMsSpoU_methylase,SpoU_sub_bind
Max annot lvl3041|Chlorophyta
KEGG koko:K15507
Evalue1e-44
EggNOG OGsCOG0566@1|root,KOG0838@2759|Eukaryota,37PZ8@33090|Viridiplantae,34KQ6@3041|Chlorophyta
DescriptionRNA 2'-O ribose methyltransferase substrate binding
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3840Ggra3840Gracilaria gracilis GNS1m malegenetig00000850_pilon 2197249..2198918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3840.t1Ggra3840.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2197249..2198918 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3840.t1.start1Ggra3840.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2197249..2197251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3840.t1.CDS1Ggra3840.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2197249..2197457 +
Ggra3840.t1.CDS2Ggra3840.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2197766..2198918 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3840.t1.exon1Ggra3840.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2197249..2197457 +
Ggra3840.t1.exon2Ggra3840.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2197766..2198918 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3840.t1.intron1Ggra3840.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2197458..2197765 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3840.t1.stop1Ggra3840.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2198916..2198918 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3840.t1 ID=Ggra3840.t1|Name=Ggra3840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=454bp
MEDWETGVKEVVEIGDDATKAWEAILARDENARRLRRTVVLDPQERQKKV
ARDEVAGDAVMDVLMSSYLYHMAAFITAAAARLRLRVRAPAVYIHRRQIC
ATWSLREDDSERNVRPPRPRRTARARDEARRYDTRRHDDRRDYDTSRHDA
RRDYDTRRHDARRDYDTRRHDARRDYDTRRHDAHRDTRRTAAPPYAEQEL
SVVRQVRDSGDDVLYGVNPVLNAVYAGRREIRHVFFQRASESSARKRDNA
AALQRIRTGATSLGATISEVDKGVLNVLVGHRKHQGVVAQASSLDYLAER
DLSAQDGVLLALDGVSDPHNVGAVLRTAHFLGAAGVVVSARNCAPLGAAT
SKASAGAAETVAAFATPSLPRLLRRLREDGWRVVALAADGGRMLRDVPLA
RRTVLVVGGEGDGLRALVRRECDEVVAIDGGCAEVDSLNVSVAAAIALHH
LLP*
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spliced messenger RNA

>Ggra3840.t1 ID=Ggra3840.t1|Name=Ggra3840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000850_pilon:2197249..2198918+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATTGGGAGACCGGTGTGAAGGAAGTGGTGGAAATAGGCGACGA
TGCAACGAAGGCGTGGGAGGCCATATTGGCGCGCGATGAAAACGCCAGAA
GACTGAGACGAACTGTTGTGCTCGATCCGCAGGAAAGGCAAAAAAAAGTA
GCACGGGATGAAGTGGCTGGCGATGCCGTTATGGATGTGCTTATGTCTTC
GTATTTATACCATATGGCCGCCTTCATCACCGCGGCAGCCGCCCGTCTCC
GCCTGCGCGTCCGCGCGCCAGCCGTATACATCCACCGTCGACAGATCTGT
GCCACGTGGTCCCTGCGCGAGGACGACAGCGAGCGGAACGTACGGCCACC
TCGTCCGCGCAGAACGGCACGCGCTCGCGACGAAGCGCGGCGATATGATA
CAAGACGACACGACGATCGTCGCGACTATGATACAAGCCGACATGACGCT
CGTCGCGACTATGATACAAGACGACATGACGCTCGTCGCGACTATGATAC
AAGACGACATGACGCTCGTCGCGACTATGATACAAGACGACATGACGCTC
ATCGCGACACCCGGCGCACCGCTGCACCGCCGTACGCAGAGCAAGAATTG
AGCGTGGTGCGGCAGGTGCGCGACAGCGGCGATGACGTGCTGTACGGCGT
CAACCCCGTTCTCAACGCCGTGTATGCCGGACGTCGCGAAATCCGTCACG
TGTTCTTCCAACGCGCGTCAGAAAGCTCGGCTCGCAAGCGCGACAATGCC
GCGGCCTTACAGCGAATCCGCACGGGCGCCACCTCTCTAGGTGCCACGAT
CAGCGAGGTGGACAAGGGCGTTCTCAATGTGCTTGTAGGGCACCGCAAAC
ATCAAGGCGTCGTCGCACAAGCCTCCTCTCTGGACTACCTGGCCGAACGC
GACCTAAGCGCGCAAGATGGCGTGCTGCTGGCGCTGGACGGCGTATCGGA
CCCGCACAACGTCGGCGCCGTGCTACGCACCGCGCACTTCCTCGGCGCGG
CCGGGGTGGTGGTGTCGGCGCGCAACTGCGCGCCGCTGGGCGCTGCGACC
AGCAAGGCGTCTGCCGGTGCGGCGGAGACGGTGGCGGCTTTCGCCACGCC
GTCGTTGCCGCGGCTGTTGCGCCGACTGCGTGAAGACGGCTGGCGCGTGG
TGGCGCTCGCAGCGGACGGCGGTCGCATGCTGCGCGACGTGCCGCTTGCA
CGCCGCACTGTGCTGGTGGTGGGCGGCGAGGGCGATGGGCTGCGCGCGTT
GGTGCGACGCGAGTGCGATGAGGTGGTGGCCATCGATGGCGGGTGCGCCG
AGGTGGACTCGCTCAACGTGAGCGTGGCGGCGGCCATTGCGCTGCATCAC
CTGCTGCCGTAG
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protein sequence of Ggra3840.t1

>Ggra3840.t1 ID=Ggra3840.t1|Name=Ggra3840.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=454bp
MEDWETGVKEVVEIGDDATKAWEAILARDENARRLRRTVVLDPQERQKKV
ARDEVAGDAVMDVLMSSYLYHMAAFITAAAARLRLRVRAPAVYIHRRQIC
ATWSLREDDSERNVRPPRPRRTARARDEARRYDTRRHDDRRDYDTSRHDA
RRDYDTRRHDARRDYDTRRHDARRDYDTRRHDAHRDTRRTAAPPYAEQEL
SVVRQVRDSGDDVLYGVNPVLNAVYAGRREIRHVFFQRASESSARKRDNA
AALQRIRTGATSLGATISEVDKGVLNVLVGHRKHQGVVAQASSLDYLAER
DLSAQDGVLLALDGVSDPHNVGAVLRTAHFLGAAGVVVSARNCAPLGAAT
SKASAGAAETVAAFATPSLPRLLRRLREDGWRVVALAADGGRMLRDVPLA
RRTVLVVGGEGDGLRALVRRECDEVVAIDGGCAEVDSLNVSVAAAIALHH
LLP*
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mRNA from alignment at tig00000850_pilon:2197249..2198918+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3840.t1 ID=Ggra3840.t1|Name=Ggra3840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1670bp|location=Sequence derived from alignment at tig00000850_pilon:2197249..2198918+ (Gracilaria gracilis GNS1m male)
ATGGAAGATTGGGAGACCGGTGTGAAGGAAGTGGTGGAAATAGGCGACGA
TGCAACGAAGGCGTGGGAGGCCATATTGGCGCGCGATGAAAACGCCAGAA
GACTGAGACGAACTGTTGTGCTCGATCCGCAGGAAAGGCAAAAAAAAGTA
GCACGGGATGAAGTGGCTGGCGATGCCGTTATGGATGTGCTTATGTCTTC
GTATTTATAGTGAGTGAAGCGCGCGTGCGATGCGGATGTTGAAGTTGCGA
CTGCTCGAAGAGATCTTCGGCTGTCGGTCGGGGATCAGCACGGACGAGAT
AACTTTGAGAGCAGCACAGTATCTATGATACGTGTGTAAAGCTTTTGCTC
GTTTTTTACGTTAGTGCGTATGCTTACAGAAGCTAATAGTCTCATATTTA
CTGTTGATCTCTCAGGGCCCCGAGCGCGTCGACGACGGCAGGTGACAAGT
CGCACACATCTGTCCGCGACGACGACAACGCTCTGCCAGGGTAGCCGCTC
CTGTCGCCGCACATCAGCCATATGGCCGCCTTCATCACCGCGGCAGCCGC
CCGTCTCCGCCTGCGCGTCCGCGCGCCAGCCGTATACATCCACCGTCGAC
AGATCTGTGCCACGTGGTCCCTGCGCGAGGACGACAGCGAGCGGAACGTA
CGGCCACCTCGTCCGCGCAGAACGGCACGCGCTCGCGACGAAGCGCGGCG
ATATGATACAAGACGACACGACGATCGTCGCGACTATGATACAAGCCGAC
ATGACGCTCGTCGCGACTATGATACAAGACGACATGACGCTCGTCGCGAC
TATGATACAAGACGACATGACGCTCGTCGCGACTATGATACAAGACGACA
TGACGCTCATCGCGACACCCGGCGCACCGCTGCACCGCCGTACGCAGAGC
AAGAATTGAGCGTGGTGCGGCAGGTGCGCGACAGCGGCGATGACGTGCTG
TACGGCGTCAACCCCGTTCTCAACGCCGTGTATGCCGGACGTCGCGAAAT
CCGTCACGTGTTCTTCCAACGCGCGTCAGAAAGCTCGGCTCGCAAGCGCG
ACAATGCCGCGGCCTTACAGCGAATCCGCACGGGCGCCACCTCTCTAGGT
GCCACGATCAGCGAGGTGGACAAGGGCGTTCTCAATGTGCTTGTAGGGCA
CCGCAAACATCAAGGCGTCGTCGCACAAGCCTCCTCTCTGGACTACCTGG
CCGAACGCGACCTAAGCGCGCAAGATGGCGTGCTGCTGGCGCTGGACGGC
GTATCGGACCCGCACAACGTCGGCGCCGTGCTACGCACCGCGCACTTCCT
CGGCGCGGCCGGGGTGGTGGTGTCGGCGCGCAACTGCGCGCCGCTGGGCG
CTGCGACCAGCAAGGCGTCTGCCGGTGCGGCGGAGACGGTGGCGGCTTTC
GCCACGCCGTCGTTGCCGCGGCTGTTGCGCCGACTGCGTGAAGACGGCTG
GCGCGTGGTGGCGCTCGCAGCGGACGGCGGTCGCATGCTGCGCGACGTGC
CGCTTGCACGCCGCACTGTGCTGGTGGTGGGCGGCGAGGGCGATGGGCTG
CGCGCGTTGGTGCGACGCGAGTGCGATGAGGTGGTGGCCATCGATGGCGG
GTGCGCCGAGGTGGACTCGCTCAACGTGAGCGTGGCGGCGGCCATTGCGC
TGCATCACCTGCTGCCGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:2197249..2198918+

>Ggra3840.t1 ID=Ggra3840.t1|Name=Ggra3840.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00000850_pilon:2197249..2198918+ (Gracilaria gracilis GNS1m male)
ATGGAAGATTGGGAGACCGGTGTGAAGGAAGTGGTGGAAATAGGCGACGA
TGCAACGAAGGCGTGGGAGGCCATATTGGCGCGCGATGAAAACGCCAGAA
GACTGAGACGAACTGTTGTGCTCGATCCGCAGGAAAGGCAAAAAAAAGTA
GCACGGGATGAAGTGGCTGGCGATGCCGTTATGGATGTGCTTATGTCTTC
GTATTTATACCATATGGCCGCCTTCATCACCGCGGCAGCCGCCCGTCTCC
GCCTGCGCGTCCGCGCGCCAGCCGTATACATCCACCGTCGACAGATCTGT
GCCACGTGGTCCCTGCGCGAGGACGACAGCGAGCGGAACGTACGGCCACC
TCGTCCGCGCAGAACGGCACGCGCTCGCGACGAAGCGCGGCGATATGATA
CAAGACGACACGACGATCGTCGCGACTATGATACAAGCCGACATGACGCT
CGTCGCGACTATGATACAAGACGACATGACGCTCGTCGCGACTATGATAC
AAGACGACATGACGCTCGTCGCGACTATGATACAAGACGACATGACGCTC
ATCGCGACACCCGGCGCACCGCTGCACCGCCGTACGCAGAGCAAGAATTG
AGCGTGGTGCGGCAGGTGCGCGACAGCGGCGATGACGTGCTGTACGGCGT
CAACCCCGTTCTCAACGCCGTGTATGCCGGACGTCGCGAAATCCGTCACG
TGTTCTTCCAACGCGCGTCAGAAAGCTCGGCTCGCAAGCGCGACAATGCC
GCGGCCTTACAGCGAATCCGCACGGGCGCCACCTCTCTAGGTGCCACGAT
CAGCGAGGTGGACAAGGGCGTTCTCAATGTGCTTGTAGGGCACCGCAAAC
ATCAAGGCGTCGTCGCACAAGCCTCCTCTCTGGACTACCTGGCCGAACGC
GACCTAAGCGCGCAAGATGGCGTGCTGCTGGCGCTGGACGGCGTATCGGA
CCCGCACAACGTCGGCGCCGTGCTACGCACCGCGCACTTCCTCGGCGCGG
CCGGGGTGGTGGTGTCGGCGCGCAACTGCGCGCCGCTGGGCGCTGCGACC
AGCAAGGCGTCTGCCGGTGCGGCGGAGACGGTGGCGGCTTTCGCCACGCC
GTCGTTGCCGCGGCTGTTGCGCCGACTGCGTGAAGACGGCTGGCGCGTGG
TGGCGCTCGCAGCGGACGGCGGTCGCATGCTGCGCGACGTGCCGCTTGCA
CGCCGCACTGTGCTGGTGGTGGGCGGCGAGGGCGATGGGCTGCGCGCGTT
GGTGCGACGCGAGTGCGATGAGGTGGTGGCCATCGATGGCGGGTGCGCCG
AGGTGGACTCGCTCAACGTGAGCGTGGCGGCGGCCATTGCGCTGCATCAC
CTGCTGCCGTAG
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