Ggra3825.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3825.t2
Unique NameGgra3825.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2145565..2146526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog691883.XP_009494240.1
Preferred nameCTNS
PFAMsPQ-loop
Max annot lvl33154|Opisthokonta
KEGG koko:K12386,ko:K16686,ko:K17436
KEGG Pathwayko04142,ko04214,ko04390,ko04391,ko04392,map04142,map04214,map04390,map04391,map04392
KEGG ModuleM00683
GOsGO:0000099,GO:0000101,GO:0000323,GO:0001654,GO:0002088,GO:0003008,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005856,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006518,GO:0006520,GO:0006575,GO:0006725,GO:0006749,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0006897,GO:0006909,GO:0006996,GO:0007033,GO:0007040,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007616,GO:0007625,GO:0007626,GO:0007628,GO:0007632,GO:0008150,GO:0008152,GO:0008306,GO:0008344,GO:0008509,GO:0008514,GO:0008542,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010310,GO:0010727,GO:0010728,GO:0010730,GO:0010918,GO:0012505,GO:0015075,GO:0015171,GO:0015179,GO:0015184,GO:0015318,GO:0015562,GO:0015711,GO:0015804,GO:0015807,GO:0015811,GO:0015849,GO:0016020,GO:0016043,GO:0016192,GO:0017144,GO:0019222,GO:0019637,GO:0019693,GO:0019752,GO:0022857,GO:0030534,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0034220,GO:0034639,GO:0034641,GO:0042391,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045111,GO:0045838,GO:0046034,GO:0046483,GO:0046942,GO:0046943,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051186,GO:0051193,GO:0051195,GO:0051234,GO:0051881,GO:0055085,GO:0055086,GO:0060322,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072337,GO:0072348,GO:0072349,GO:0072521,GO:0080171,GO:0090659,GO:0097708,GO:0098588,GO:0098656,GO:0098657,GO:0098805,GO:0098852,GO:1901135,GO:1901360,GO:1901564,GO:1901682,GO:1902475,GO:1903426,GO:1903427,GO:1903825,GO:1905039,GO:2000377,GO:2000378
Evalue4.46e-28
EggNOG OGsKOG3145@1|root,KOG3145@2759|Eukaryota,38D22@33154|Opisthokonta
DescriptionL-cystine transmembrane transporter activity
COG categoryE
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3825Ggra3825Gracilaria gracilis GNS1m malegenetig00000850_pilon 2145565..2146526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3825.t2Ggra3825.t2Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2145565..2146526 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3825.t2.start1Ggra3825.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2145565..2145567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3825.t2.CDS1Ggra3825.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2145565..2146249 +
Ggra3825.t2.CDS2Ggra3825.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2146429..2146526 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3825.t2.exon1Ggra3825.t2.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2145565..2146249 +
Ggra3825.t2.exon2Ggra3825.t2.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2146429..2146526 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3825.t2.intron1Ggra3825.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2146250..2146428 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3825.t2.stop1Ggra3825.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2146524..2146526 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3825.t2 ID=Ggra3825.t2|Name=Ggra3825.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp
MAINIVGFISYAIYTFSSFFNQAVGESYKRATGYPPQVEVNDALFALHGA
IMCCALVLQLFMYPPRTPPKPYTIVPAAIAQIAVLVGLLACVLRKLDWYR
YLRVAGAVKVVSSVIKHFPQVYLNYHRTSTVGWSFSMILCDVVGGVFSMA
QQVVRCIMMGNLAPFTSNMAKTALAAESLIFDFYFIAQHLYFYPDHTDKD
VLEMKVGHGDLESGPKAAESKGLDRKLNGLLGLRGSGVSVARTKVFSYGS
ADVVHDHKQV*
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spliced messenger RNA

>Ggra3825.t2 ID=Ggra3825.t2|Name=Ggra3825.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000850_pilon:2145565..2146526+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATTAATATCGTCGGCTTCATATCATATGCCATATACACCTTTTC
TTCATTCTTCAATCAAGCCGTGGGCGAATCGTATAAGCGAGCGACGGGAT
ACCCGCCACAAGTGGAGGTGAACGATGCTTTGTTCGCTCTCCATGGCGCA
ATCATGTGCTGCGCTCTGGTTTTGCAGCTCTTCATGTATCCACCACGAAC
GCCTCCCAAGCCGTATACTATAGTTCCAGCCGCCATTGCGCAGATAGCTG
TTCTCGTGGGATTACTGGCTTGCGTGCTCCGCAAGCTGGACTGGTACAGA
TACCTTCGAGTTGCCGGTGCAGTGAAGGTTGTGTCAAGCGTCATCAAGCA
TTTCCCGCAGGTGTATCTCAACTATCATCGCACCAGCACCGTTGGTTGGA
GCTTTTCAATGATTCTATGTGATGTTGTGGGAGGTGTGTTTAGCATGGCG
CAACAGGTTGTGCGATGCATAATGATGGGCAACCTGGCGCCGTTCACAAG
CAACATGGCTAAGACTGCACTTGCTGCCGAGTCGCTCATATTCGACTTTT
ACTTCATCGCTCAACATTTGTACTTCTATCCGGACCACACAGACAAGGAT
GTGCTTGAAATGAAGGTAGGGCACGGAGATTTGGAGAGCGGACCCAAAGC
TGCGGAGAGCAAAGGGTTGGATCGTAAACTTAACGGTCTCCTTGGTTTAA
GAGGTTCTGGGGTTTCCGTCGCGCGGACTAAGGTGTTCAGCTACGGTTCA
GCTGATGTTGTACATGATCACAAGCAGGTCTAA
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protein sequence of Ggra3825.t2

>Ggra3825.t2 ID=Ggra3825.t2|Name=Ggra3825.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MAINIVGFISYAIYTFSSFFNQAVGESYKRATGYPPQVEVNDALFALHGA
IMCCALVLQLFMYPPRTPPKPYTIVPAAIAQIAVLVGLLACVLRKLDWYR
YLRVAGAVKVVSSVIKHFPQVYLNYHRTSTVGWSFSMILCDVVGGVFSMA
QQVVRCIMMGNLAPFTSNMAKTALAAESLIFDFYFIAQHLYFYPDHTDKD
VLEMKVGHGDLESGPKAAESKGLDRKLNGLLGLRGSGVSVARTKVFSYGS
ADVVHDHKQV*
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mRNA from alignment at tig00000850_pilon:2145565..2146526+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3825.t2 ID=Ggra3825.t2|Name=Ggra3825.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=962bp|location=Sequence derived from alignment at tig00000850_pilon:2145565..2146526+ (Gracilaria gracilis GNS1m male)
ATGGCAATTAATATCGTCGGCTTCATATCATATGCCATATACACCTTTTC
TTCATTCTTCAATCAAGCCGTGGGCGAATCGTATAAGCGAGCGACGGGAT
ACCCGCCACAAGTGGAGGTGAACGATGCTTTGTTCGCTCTCCATGGCGCA
ATCATGTGCTGCGCTCTGGTTTTGCAGCTCTTCATGTATCCACCACGAAC
GCCTCCCAAGCCGTATACTATAGTTCCAGCCGCCATTGCGCAGATAGCTG
TTCTCGTGGGATTACTGGCTTGCGTGCTCCGCAAGCTGGACTGGTACAGA
TACCTTCGAGTTGCCGGTGCAGTGAAGGTTGTGTCAAGCGTCATCAAGCA
TTTCCCGCAGGTGTATCTCAACTATCATCGCACCAGCACCGTTGGTTGGA
GCTTTTCAATGATTCTATGTGATGTTGTGGGAGGTGTGTTTAGCATGGCG
CAACAGGTTGTGCGATGCATAATGATGGGCAACCTGGCGCCGTTCACAAG
CAACATGGCTAAGACTGCACTTGCTGCCGAGTCGCTCATATTCGACTTTT
ACTTCATCGCTCAACATTTGTACTTCTATCCGGACCACACAGACAAGGAT
GTGCTTGAAATGAAGGTAGGGCACGGAGATTTGGAGAGCGGACCCAAAGC
TGCGGAGAGCAAAGGGTTGGATCGTAAACTTAACGGTAATGTTTCGCACA
ATGAGCCAAAGGACCGGGCTCACGATGTGCCAGTGGACCGGCAGCCTTTG
ATGAGTTCACCGGATTCCTAGTCCGACTTGGACGTGTTTCGCATGCTAAC
TTTCGATAGTTCTGTGGTACATTGACTTGTGTGCTCAAAATATTCTCTGT
TTGATGTTAGTCAGGTCTCCTTGGTTTAAGAGGTTCTGGGGTTTCCGTCG
CGCGGACTAAGGTGTTCAGCTACGGTTCAGCTGATGTTGTACATGATCAC
AAGCAGGTCTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2145565..2146526+

>Ggra3825.t2 ID=Ggra3825.t2|Name=Ggra3825.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00000850_pilon:2145565..2146526+ (Gracilaria gracilis GNS1m male)
ATGGCAATTAATATCGTCGGCTTCATATCATATGCCATATACACCTTTTC
TTCATTCTTCAATCAAGCCGTGGGCGAATCGTATAAGCGAGCGACGGGAT
ACCCGCCACAAGTGGAGGTGAACGATGCTTTGTTCGCTCTCCATGGCGCA
ATCATGTGCTGCGCTCTGGTTTTGCAGCTCTTCATGTATCCACCACGAAC
GCCTCCCAAGCCGTATACTATAGTTCCAGCCGCCATTGCGCAGATAGCTG
TTCTCGTGGGATTACTGGCTTGCGTGCTCCGCAAGCTGGACTGGTACAGA
TACCTTCGAGTTGCCGGTGCAGTGAAGGTTGTGTCAAGCGTCATCAAGCA
TTTCCCGCAGGTGTATCTCAACTATCATCGCACCAGCACCGTTGGTTGGA
GCTTTTCAATGATTCTATGTGATGTTGTGGGAGGTGTGTTTAGCATGGCG
CAACAGGTTGTGCGATGCATAATGATGGGCAACCTGGCGCCGTTCACAAG
CAACATGGCTAAGACTGCACTTGCTGCCGAGTCGCTCATATTCGACTTTT
ACTTCATCGCTCAACATTTGTACTTCTATCCGGACCACACAGACAAGGAT
GTGCTTGAAATGAAGGTAGGGCACGGAGATTTGGAGAGCGGACCCAAAGC
TGCGGAGAGCAAAGGGTTGGATCGTAAACTTAACGGTCTCCTTGGTTTAA
GAGGTTCTGGGGTTTCCGTCGCGCGGACTAAGGTGTTCAGCTACGGTTCA
GCTGATGTTGTACATGATCACAAGCAGGTCTAA
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