Ggra3823.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3823.t2
Unique Name	Ggra3823.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:2141517..2142905 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1038862.KB893843_gene417
Preferred name	MA20_34775
PFAMs	M20_dimer,Peptidase_M20,Peptidase_M28
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00064
KEGG ko	ko:K02083
KEGG Reaction	R02423
KEGG Pathway	ko00230,ko01120,map00230,map01120
Evalue	2.51e-84
EggNOG OGs	COG0624@1\|root,COG0624@2\|Bacteria,1MVUX@1224\|Proteobacteria,2TR5X@28211\|Alphaproteobacteria,3JRW7@41294\|Bradyrhizobiaceae
EC	3.5.3.9
Description	Peptidase family M28
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3823	Ggra3823	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 2141517..2142905 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3823.t2.stop1	Ggra3823.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 2141517..2141519 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3823.t2.CDS1	Ggra3823.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 2141517..2142905 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3823.t2.exon1	Ggra3823.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 2141517..2142905 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3823.t2.start1	Ggra3823.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 2142903..2142905 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3823.t2	Ggra3823.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 2141517..2142905 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:2141517..2142905-
coding sequence from alignment at tig00000850_pilon:2141517..2142905-

mRNA sequence

>Ggra3823.t2 ID=Ggra3823.t2|Name=Ggra3823.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=463bp
MTAASFSSTPVVATLPFLLVCALFVVTYRPLLRSNFPQYTPPLTNGTDDV
LQAAANDVVGQLHALSRLSESDTFLNRPFLSKASADAQRELLRLMRDAGL
NAFVDGAGNVRGILSCSQEGGSRRTLLMGSHHDTVANAGHYDGMLGVLTA
IAVTRLYRTSICSLPFDLSVVAFDDEEGNNAFSVTNFGARAFIGNDLSHV
THKQPFKDAYNSIFSTDNVDASVRSAALTPAEINNLAGYLELHIEQGPVL
EQLNRPVAAVNAIAGQTRMRVRLDGHAAHAGTVPMKQRRDALTAAAQLVL
DIESLGLAHSDDHLVATVGRLEVAPGATNVVPGEVSFSVDVRSRTDAVRK
DVVQRIVDAIESVGKKRGIAVQVDVVHDVDAVQMSDWLVNILKEVAGGDT
LTSGAGHDAQFMAKVTDAGMLFVRCRQGISHSPEEYVRNEDVYYGLVALN
TAVERIADKGNH*

spliced messenger RNA

>Ggra3823.t2 ID=Ggra3823.t2|Name=Ggra3823.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000850_pilon:2141517..2142905- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCGCTTCCTTCTCTTCGACTCCCGTCGTTGCTACGCTGCCTTT
TTTGTTGGTTTGTGCCTTGTTTGTCGTTACTTACCGCCCTCTACTTCGGT
CTAACTTTCCGCAATACACACCTCCGCTAACTAACGGCACGGACGACGTT
TTGCAGGCTGCAGCAAATGATGTGGTTGGTCAACTGCACGCTCTCTCACG
CTTAAGTGAGTCGGATACATTTCTCAACCGCCCCTTTCTTTCAAAGGCTT
CGGCCGACGCTCAACGTGAACTACTCCGCTTGATGCGTGACGCGGGGCTC
AACGCATTCGTTGATGGTGCGGGTAATGTTCGCGGTATCCTGTCATGCTC
TCAAGAAGGCGGCTCTCGTCGAACCTTATTGATGGGTAGTCATCATGATA
CTGTCGCCAATGCCGGTCACTACGATGGCATGTTGGGCGTGCTTACTGCC
ATTGCTGTCACTCGCTTGTATCGTACTTCTATATGTTCTCTTCCATTCGA
CCTTTCAGTCGTAGCCTTTGACGATGAGGAGGGTAACAATGCTTTCTCCG
TCACAAATTTTGGCGCTCGTGCTTTCATTGGAAACGACTTATCACACGTA
ACCCACAAGCAACCGTTTAAAGACGCCTACAATTCTATCTTCTCAACGGA
TAACGTGGACGCTTCTGTGCGTTCGGCTGCGCTCACTCCTGCCGAGATCA
ACAACTTGGCGGGTTATCTAGAACTGCATATTGAACAGGGCCCGGTGCTT
GAGCAGTTGAATCGTCCGGTGGCAGCTGTAAACGCCATCGCAGGTCAGAC
TCGCATGAGGGTGCGTCTTGATGGCCATGCTGCGCATGCGGGCACTGTAC
CAATGAAGCAACGACGAGACGCGCTCACGGCCGCCGCACAACTGGTGCTG
GACATTGAATCGCTCGGGCTGGCTCATTCTGACGACCATCTAGTAGCTAC
GGTGGGCCGGCTGGAGGTTGCTCCCGGTGCCACCAATGTAGTGCCTGGTG
AGGTGTCTTTTTCTGTAGATGTGCGATCACGGACGGACGCTGTCAGAAAG
GATGTGGTTCAACGCATTGTTGATGCTATTGAGAGCGTTGGCAAAAAACG
TGGTATTGCTGTTCAAGTGGATGTTGTACATGATGTGGATGCTGTACAGA
TGAGTGACTGGCTTGTAAACATTTTGAAGGAAGTTGCTGGAGGTGATACA
CTTACCAGTGGTGCTGGCCATGACGCGCAGTTCATGGCAAAGGTGACTGA
TGCTGGCATGCTTTTCGTGCGATGTAGGCAGGGTATCAGTCACAGCCCCG
AAGAGTATGTCAGAAATGAAGATGTCTATTATGGTTTAGTTGCATTGAAC
ACGGCTGTGGAGCGAATTGCGGACAAAGGAAATCACTGA

protein sequence of Ggra3823.t2

>Ggra3823.t2 ID=Ggra3823.t2|Name=Ggra3823.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=463bp
MTAASFSSTPVVATLPFLLVCALFVVTYRPLLRSNFPQYTPPLTNGTDDV
LQAAANDVVGQLHALSRLSESDTFLNRPFLSKASADAQRELLRLMRDAGL
NAFVDGAGNVRGILSCSQEGGSRRTLLMGSHHDTVANAGHYDGMLGVLTA
IAVTRLYRTSICSLPFDLSVVAFDDEEGNNAFSVTNFGARAFIGNDLSHV
THKQPFKDAYNSIFSTDNVDASVRSAALTPAEINNLAGYLELHIEQGPVL
EQLNRPVAAVNAIAGQTRMRVRLDGHAAHAGTVPMKQRRDALTAAAQLVL
DIESLGLAHSDDHLVATVGRLEVAPGATNVVPGEVSFSVDVRSRTDAVRK
DVVQRIVDAIESVGKKRGIAVQVDVVHDVDAVQMSDWLVNILKEVAGGDT
LTSGAGHDAQFMAKVTDAGMLFVRCRQGISHSPEEYVRNEDVYYGLVALN
TAVERIADKGNH*

mRNA from alignment at tig00000850_pilon:2141517..2142905-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3823.t2 ID=Ggra3823.t2|Name=Ggra3823.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000850_pilon:2141517..2142905- (Gracilaria gracilis GNS1m male)
ATGACTGCCGCTTCCTTCTCTTCGACTCCCGTCGTTGCTACGCTGCCTTT
TTTGTTGGTTTGTGCCTTGTTTGTCGTTACTTACCGCCCTCTACTTCGGT
CTAACTTTCCGCAATACACACCTCCGCTAACTAACGGCACGGACGACGTT
TTGCAGGCTGCAGCAAATGATGTGGTTGGTCAACTGCACGCTCTCTCACG
CTTAAGTGAGTCGGATACATTTCTCAACCGCCCCTTTCTTTCAAAGGCTT
CGGCCGACGCTCAACGTGAACTACTCCGCTTGATGCGTGACGCGGGGCTC
AACGCATTCGTTGATGGTGCGGGTAATGTTCGCGGTATCCTGTCATGCTC
TCAAGAAGGCGGCTCTCGTCGAACCTTATTGATGGGTAGTCATCATGATA
CTGTCGCCAATGCCGGTCACTACGATGGCATGTTGGGCGTGCTTACTGCC
ATTGCTGTCACTCGCTTGTATCGTACTTCTATATGTTCTCTTCCATTCGA
CCTTTCAGTCGTAGCCTTTGACGATGAGGAGGGTAACAATGCTTTCTCCG
TCACAAATTTTGGCGCTCGTGCTTTCATTGGAAACGACTTATCACACGTA
ACCCACAAGCAACCGTTTAAAGACGCCTACAATTCTATCTTCTCAACGGA
TAACGTGGACGCTTCTGTGCGTTCGGCTGCGCTCACTCCTGCCGAGATCA
ACAACTTGGCGGGTTATCTAGAACTGCATATTGAACAGGGCCCGGTGCTT
GAGCAGTTGAATCGTCCGGTGGCAGCTGTAAACGCCATCGCAGGTCAGAC
TCGCATGAGGGTGCGTCTTGATGGCCATGCTGCGCATGCGGGCACTGTAC
CAATGAAGCAACGACGAGACGCGCTCACGGCCGCCGCACAACTGGTGCTG
GACATTGAATCGCTCGGGCTGGCTCATTCTGACGACCATCTAGTAGCTAC
GGTGGGCCGGCTGGAGGTTGCTCCCGGTGCCACCAATGTAGTGCCTGGTG
AGGTGTCTTTTTCTGTAGATGTGCGATCACGGACGGACGCTGTCAGAAAG
GATGTGGTTCAACGCATTGTTGATGCTATTGAGAGCGTTGGCAAAAAACG
TGGTATTGCTGTTCAAGTGGATGTTGTACATGATGTGGATGCTGTACAGA
TGAGTGACTGGCTTGTAAACATTTTGAAGGAAGTTGCTGGAGGTGATACA
CTTACCAGTGGTGCTGGCCATGACGCGCAGTTCATGGCAAAGGTGACTGA
TGCTGGCATGCTTTTCGTGCGATGTAGGCAGGGTATCAGTCACAGCCCCG
AAGAGTATGTCAGAAATGAAGATGTCTATTATGGTTTAGTTGCATTGAAC
ACGGCTGTGGAGCGAATTGCGGACAAAGGAAATCACTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:2141517..2142905-

>Ggra3823.t2 ID=Ggra3823.t2|Name=Ggra3823.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000850_pilon:2141517..2142905- (Gracilaria gracilis GNS1m male)
ATGACTGCCGCTTCCTTCTCTTCGACTCCCGTCGTTGCTACGCTGCCTTT
TTTGTTGGTTTGTGCCTTGTTTGTCGTTACTTACCGCCCTCTACTTCGGT
CTAACTTTCCGCAATACACACCTCCGCTAACTAACGGCACGGACGACGTT
TTGCAGGCTGCAGCAAATGATGTGGTTGGTCAACTGCACGCTCTCTCACG
CTTAAGTGAGTCGGATACATTTCTCAACCGCCCCTTTCTTTCAAAGGCTT
CGGCCGACGCTCAACGTGAACTACTCCGCTTGATGCGTGACGCGGGGCTC
AACGCATTCGTTGATGGTGCGGGTAATGTTCGCGGTATCCTGTCATGCTC
TCAAGAAGGCGGCTCTCGTCGAACCTTATTGATGGGTAGTCATCATGATA
CTGTCGCCAATGCCGGTCACTACGATGGCATGTTGGGCGTGCTTACTGCC
ATTGCTGTCACTCGCTTGTATCGTACTTCTATATGTTCTCTTCCATTCGA
CCTTTCAGTCGTAGCCTTTGACGATGAGGAGGGTAACAATGCTTTCTCCG
TCACAAATTTTGGCGCTCGTGCTTTCATTGGAAACGACTTATCACACGTA
ACCCACAAGCAACCGTTTAAAGACGCCTACAATTCTATCTTCTCAACGGA
TAACGTGGACGCTTCTGTGCGTTCGGCTGCGCTCACTCCTGCCGAGATCA
ACAACTTGGCGGGTTATCTAGAACTGCATATTGAACAGGGCCCGGTGCTT
GAGCAGTTGAATCGTCCGGTGGCAGCTGTAAACGCCATCGCAGGTCAGAC
TCGCATGAGGGTGCGTCTTGATGGCCATGCTGCGCATGCGGGCACTGTAC
CAATGAAGCAACGACGAGACGCGCTCACGGCCGCCGCACAACTGGTGCTG
GACATTGAATCGCTCGGGCTGGCTCATTCTGACGACCATCTAGTAGCTAC
GGTGGGCCGGCTGGAGGTTGCTCCCGGTGCCACCAATGTAGTGCCTGGTG
AGGTGTCTTTTTCTGTAGATGTGCGATCACGGACGGACGCTGTCAGAAAG
GATGTGGTTCAACGCATTGTTGATGCTATTGAGAGCGTTGGCAAAAAACG
TGGTATTGCTGTTCAAGTGGATGTTGTACATGATGTGGATGCTGTACAGA
TGAGTGACTGGCTTGTAAACATTTTGAAGGAAGTTGCTGGAGGTGATACA
CTTACCAGTGGTGCTGGCCATGACGCGCAGTTCATGGCAAAGGTGACTGA
TGCTGGCATGCTTTTCGTGCGATGTAGGCAGGGTATCAGTCACAGCCCCG
AAGAGTATGTCAGAAATGAAGATGTCTATTATGGTTTAGTTGCATTGAAC
ACGGCTGTGGAGCGAATTGCGGACAAAGGAAATCACTGA