Ggra3820.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3820.t1
Unique NameGgra3820.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length98
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2137319..2137692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705288.1
Preferred nameURM1
PFAMsUrm1
Max annot lvl2759|Eukaryota
KEGG koko:K12161
KEGG Pathwayko04122,map04122
GOsGO:0000003,GO:0001403,GO:0001932,GO:0001933,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0007114,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016070,GO:0019220,GO:0019222,GO:0019538,GO:0019954,GO:0023051,GO:0023057,GO:0030447,GO:0031323,GO:0031324,GO:0031386,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032446,GO:0032447,GO:0032505,GO:0032872,GO:0032873,GO:0033554,GO:0034227,GO:0034470,GO:0034599,GO:0034641,GO:0034660,GO:0036211,GO:0036267,GO:0040007,GO:0042221,GO:0042325,GO:0042326,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043409,GO:0043412,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045936,GO:0046328,GO:0046329,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051301,GO:0051716,GO:0060255,GO:0065007,GO:0070302,GO:0070303,GO:0070647,GO:0070783,GO:0070887,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:1901360,GO:1901564,GO:1902531,GO:1902532
Evalue5.76e-28
EggNOG OGsCOG5131@1|root,KOG4146@2759|Eukaryota
DescriptiontRNA thio-modification
COG categoryJ
BRITEko00000,ko00001,ko03016,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3820Ggra3820Gracilaria gracilis GNS1m malegenetig00000850_pilon 2137319..2137692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3820.t1Ggra3820.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2137319..2137692 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3820.t1.stop1Ggra3820.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2137319..2137321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3820.t1.CDS1Ggra3820.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2137319..2137586 -
Ggra3820.t1.CDS2Ggra3820.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2137667..2137692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3820.t1.exon1Ggra3820.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2137319..2137586 -
Ggra3820.t1.exon2Ggra3820.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2137667..2137692 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3820.t1.intron1Ggra3820.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2137587..2137666 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3820.t1.start1Ggra3820.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2137690..2137692 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3820.t1 ID=Ggra3820.t1|Name=Ggra3820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=98bp
MTSLHLQFGGGLEALFSHNKQVQVQVSPQSVRTINDLIEYIRTTMIRERH
DMFISQGSLRPGILVLVNDVDWELVDAHRYLLKDGDQISFISTLHGG*
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spliced messenger RNA

>Ggra3820.t1 ID=Ggra3820.t1|Name=Ggra3820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp|location=Sequence derived from alignment at tig00000850_pilon:2137319..2137692- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCGCTCCATCTTCAGTTTGGCGGCGGCCTAGAAGCGCTTTTTTC
GCACAACAAGCAAGTCCAAGTCCAAGTTTCGCCGCAGTCCGTGCGAACCA
TAAACGATCTCATAGAGTACATTCGCACCACCATGATTCGCGAACGACAT
GACATGTTTATTAGCCAAGGCTCCTTACGACCTGGTATTCTGGTGTTGGT
CAATGACGTCGATTGGGAACTGGTCGATGCCCATCGTTACCTTCTCAAAG
ATGGAGATCAAATCTCCTTTATTTCAACTCTCCACGGTGGTTAG
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protein sequence of Ggra3820.t1

>Ggra3820.t1 ID=Ggra3820.t1|Name=Ggra3820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=98bp
MTSLHLQFGGGLEALFSHNKQVQVQVSPQSVRTINDLIEYIRTTMIRERH
DMFISQGSLRPGILVLVNDVDWELVDAHRYLLKDGDQISFISTLHGG*
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mRNA from alignment at tig00000850_pilon:2137319..2137692-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3820.t1 ID=Ggra3820.t1|Name=Ggra3820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=374bp|location=Sequence derived from alignment at tig00000850_pilon:2137319..2137692- (Gracilaria gracilis GNS1m male)
ATGACTTCGCTCCATCTTCAGTTTGGGTAAGTTCTTCCAAAAGTCCACCG
CTGTTACAGTAGCCATCGCTTGAACAAATCCACTAAACCACCCTCGTGTC
TTCCAGCGGCGGCCTAGAAGCGCTTTTTTCGCACAACAAGCAAGTCCAAG
TCCAAGTTTCGCCGCAGTCCGTGCGAACCATAAACGATCTCATAGAGTAC
ATTCGCACCACCATGATTCGCGAACGACATGACATGTTTATTAGCCAAGG
CTCCTTACGACCTGGTATTCTGGTGTTGGTCAATGACGTCGATTGGGAAC
TGGTCGATGCCCATCGTTACCTTCTCAAAGATGGAGATCAAATCTCCTTT
ATTTCAACTCTCCACGGTGGTTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:2137319..2137692-

>Ggra3820.t1 ID=Ggra3820.t1|Name=Ggra3820.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=294bp|location=Sequence derived from alignment at tig00000850_pilon:2137319..2137692- (Gracilaria gracilis GNS1m male)
ATGACTTCGCTCCATCTTCAGTTTGGCGGCGGCCTAGAAGCGCTTTTTTC
GCACAACAAGCAAGTCCAAGTCCAAGTTTCGCCGCAGTCCGTGCGAACCA
TAAACGATCTCATAGAGTACATTCGCACCACCATGATTCGCGAACGACAT
GACATGTTTATTAGCCAAGGCTCCTTACGACCTGGTATTCTGGTGTTGGT
CAATGACGTCGATTGGGAACTGGTCGATGCCCATCGTTACCTTCTCAAAG
ATGGAGATCAAATCTCCTTTATTTCAACTCTCCACGGTGGTTAG
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