Ggra3819.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3819.t1
Unique NameGgra3819.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length544
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2135541..2137172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708321.1
Preferred nameEXTL2
PFAMsGlyco_transf_64
Max annot lvl2759|Eukaryota
KEGG koko:K02367,ko:K02369,ko:K02370,ko:K04794
KEGG ReactionR05930,R05935,R05936,R10138,R10139
KEGG Pathwayko00534,ko01100,map00534,map01100
KEGG ModuleM00059
GOsGO:0001888,GO:0003674,GO:0003824,GO:0005488,GO:0005539,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006040,GO:0006044,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008376,GO:0009225,GO:0009987,GO:0010033,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019276,GO:0023052,GO:0030145,GO:0030968,GO:0031984,GO:0033554,GO:0034620,GO:0034641,GO:0034976,GO:0035248,GO:0035966,GO:0035967,GO:0036498,GO:0042175,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0047237,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055086,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0097367,GO:0098827,GO:1901071,GO:1901135,GO:1901360
Evalue1.97e-66
EggNOG OGsCOG5597@1|root,KOG1022@1|root,KOG1022@2759|Eukaryota,KOG1950@2759|Eukaryota
EC2.4.1.223,2.4.1.224,2.4.1.225,3.1.1.29
Descriptionglycogenin glucosyltransferase activity
COG categoryM
CAZyGT47,GT64
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3819Ggra3819Gracilaria gracilis GNS1m malegenetig00000850_pilon 2135541..2137172 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3819.t1.start1Ggra3819.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2135541..2135543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3819.t1.CDS1Ggra3819.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2135541..2137172 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3819.t1.exon1Ggra3819.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2135541..2137172 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3819.t1.stop1Ggra3819.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2137170..2137172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3819.t1Ggra3819.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2135541..2137172 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3819.t1 ID=Ggra3819.t1|Name=Ggra3819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=544bp
MAALTACFFILYLLLLAQRASAFENDALDSIDQPDQNAFATLLCDAETLP
AVEALAHSIRLANHEEPFLIILPSSVPDFVVGRINNLPNTHAYEADSLAY
PFNSTADRMSIHKPCRFLKLQLWGLTRWKKILFLDADTIVRKSVAELFDA
PGFSAVKDPVGMNYNTGVIVIEPSRFVYSLIINNYVHAGSYNVGDQGALN
ALIDFDAWNPLPMRYNTFHTAPQESFEDAKIVHYSGDAKPWNFWKARGHG
RIPTRAFVEWCNMAENTPTAACHMRGNIDYRQEGSTLKKRYKDSVADEHL
SVLLSTFNRDSWRELAVFYAGLDFVKEVYVVWQNMNKTREAAPHEKVKFI
YPDTDSLNNRYLASDLSEDCVYICDDDIYVPAHSLRSGFEVWRQNPARLV
GFYPRMWYPVPGSYSVNIASGYNIVLTKGMFAHRSFLTAYSLFLPKRLAR
VVDEVMNCEDILLNMLAVGMTGLPPLAVMSNETIHDVGKDKGISGPKGSS
HLRTRDYCVQTFMRLGMDQAAPASRGSMLPLARKNHVIGAGDD*
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spliced messenger RNA

>Ggra3819.t1 ID=Ggra3819.t1|Name=Ggra3819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000850_pilon:2135541..2137172+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCACTGACTGCCTGCTTCTTCATTTTATATCTGCTGCTCCTCGC
GCAGCGTGCGTCTGCCTTTGAAAACGATGCGCTTGATTCCATTGATCAAC
CTGACCAAAACGCGTTCGCCACCCTGTTATGCGACGCAGAGACGCTTCCG
GCGGTCGAAGCGCTCGCGCACTCTATTCGACTGGCTAATCACGAAGAACC
GTTTCTTATCATTCTGCCCTCTTCCGTTCCGGACTTTGTGGTCGGTCGTA
TCAATAATTTGCCCAACACGCATGCGTATGAAGCAGATTCTTTGGCGTAC
CCTTTCAATTCCACTGCTGATCGAATGAGCATTCACAAACCATGCCGCTT
TCTCAAACTGCAGCTTTGGGGACTGACCAGGTGGAAAAAGATTCTCTTCT
TGGATGCCGATACAATTGTGCGTAAGAGCGTCGCAGAACTCTTCGATGCT
CCGGGTTTTAGTGCCGTGAAAGATCCGGTGGGCATGAACTACAATACTGG
AGTTATTGTCATTGAACCCTCCCGTTTTGTGTATTCACTCATTATTAACA
ACTACGTACATGCAGGTAGTTACAACGTGGGTGATCAGGGTGCGCTTAAT
GCTCTCATCGATTTTGACGCTTGGAATCCGTTGCCGATGAGATACAACAC
CTTCCATACTGCACCTCAGGAATCGTTTGAAGACGCGAAGATAGTACATT
ACTCGGGAGACGCGAAGCCATGGAACTTTTGGAAGGCTAGAGGACATGGA
AGGATTCCGACGCGTGCTTTTGTAGAGTGGTGTAACATGGCCGAGAACAC
GCCCACTGCTGCGTGTCATATGCGAGGTAATATTGATTATCGACAAGAAG
GGTCGACGCTGAAGAAGCGCTACAAGGATTCGGTTGCGGATGAACATCTT
AGTGTGCTTCTTTCAACGTTCAATCGTGACTCGTGGAGAGAGCTGGCTGT
CTTCTACGCTGGACTGGACTTTGTGAAGGAGGTGTACGTTGTTTGGCAGA
ATATGAACAAGACAAGAGAAGCTGCACCTCATGAAAAAGTGAAGTTCATA
TATCCAGATACTGATTCACTCAACAACCGATACCTTGCGTCTGATCTATC
GGAAGATTGTGTGTATATATGCGATGATGACATCTACGTACCGGCGCATA
GCCTGCGATCCGGGTTTGAGGTATGGAGACAAAACCCGGCGCGACTGGTT
GGCTTTTATCCGCGAATGTGGTATCCAGTGCCGGGATCGTACTCGGTGAA
CATCGCATCGGGATACAACATCGTGCTGACAAAAGGCATGTTTGCTCACC
GCTCTTTCTTAACCGCTTATTCACTGTTCTTGCCTAAACGGCTGGCGCGC
GTTGTTGACGAAGTGATGAACTGCGAGGATATTCTGCTGAATATGTTGGC
GGTCGGGATGACTGGGTTGCCACCATTGGCGGTCATGTCGAATGAAACGA
TTCATGACGTGGGCAAGGACAAGGGGATTTCGGGACCCAAAGGGTCAAGT
CATTTGCGTACTCGAGATTATTGTGTGCAAACGTTTATGCGACTTGGAAT
GGATCAAGCGGCACCAGCGAGTCGTGGAAGCATGTTGCCGCTGGCGAGAA
AGAACCATGTGATCGGAGCTGGTGACGACTAG
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protein sequence of Ggra3819.t1

>Ggra3819.t1 ID=Ggra3819.t1|Name=Ggra3819.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=544bp
MAALTACFFILYLLLLAQRASAFENDALDSIDQPDQNAFATLLCDAETLP
AVEALAHSIRLANHEEPFLIILPSSVPDFVVGRINNLPNTHAYEADSLAY
PFNSTADRMSIHKPCRFLKLQLWGLTRWKKILFLDADTIVRKSVAELFDA
PGFSAVKDPVGMNYNTGVIVIEPSRFVYSLIINNYVHAGSYNVGDQGALN
ALIDFDAWNPLPMRYNTFHTAPQESFEDAKIVHYSGDAKPWNFWKARGHG
RIPTRAFVEWCNMAENTPTAACHMRGNIDYRQEGSTLKKRYKDSVADEHL
SVLLSTFNRDSWRELAVFYAGLDFVKEVYVVWQNMNKTREAAPHEKVKFI
YPDTDSLNNRYLASDLSEDCVYICDDDIYVPAHSLRSGFEVWRQNPARLV
GFYPRMWYPVPGSYSVNIASGYNIVLTKGMFAHRSFLTAYSLFLPKRLAR
VVDEVMNCEDILLNMLAVGMTGLPPLAVMSNETIHDVGKDKGISGPKGSS
HLRTRDYCVQTFMRLGMDQAAPASRGSMLPLARKNHVIGAGDD*
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mRNA from alignment at tig00000850_pilon:2135541..2137172+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3819.t1 ID=Ggra3819.t1|Name=Ggra3819.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00000850_pilon:2135541..2137172+ (Gracilaria gracilis GNS1m male)
ATGGCGGCACTGACTGCCTGCTTCTTCATTTTATATCTGCTGCTCCTCGC
GCAGCGTGCGTCTGCCTTTGAAAACGATGCGCTTGATTCCATTGATCAAC
CTGACCAAAACGCGTTCGCCACCCTGTTATGCGACGCAGAGACGCTTCCG
GCGGTCGAAGCGCTCGCGCACTCTATTCGACTGGCTAATCACGAAGAACC
GTTTCTTATCATTCTGCCCTCTTCCGTTCCGGACTTTGTGGTCGGTCGTA
TCAATAATTTGCCCAACACGCATGCGTATGAAGCAGATTCTTTGGCGTAC
CCTTTCAATTCCACTGCTGATCGAATGAGCATTCACAAACCATGCCGCTT
TCTCAAACTGCAGCTTTGGGGACTGACCAGGTGGAAAAAGATTCTCTTCT
TGGATGCCGATACAATTGTGCGTAAGAGCGTCGCAGAACTCTTCGATGCT
CCGGGTTTTAGTGCCGTGAAAGATCCGGTGGGCATGAACTACAATACTGG
AGTTATTGTCATTGAACCCTCCCGTTTTGTGTATTCACTCATTATTAACA
ACTACGTACATGCAGGTAGTTACAACGTGGGTGATCAGGGTGCGCTTAAT
GCTCTCATCGATTTTGACGCTTGGAATCCGTTGCCGATGAGATACAACAC
CTTCCATACTGCACCTCAGGAATCGTTTGAAGACGCGAAGATAGTACATT
ACTCGGGAGACGCGAAGCCATGGAACTTTTGGAAGGCTAGAGGACATGGA
AGGATTCCGACGCGTGCTTTTGTAGAGTGGTGTAACATGGCCGAGAACAC
GCCCACTGCTGCGTGTCATATGCGAGGTAATATTGATTATCGACAAGAAG
GGTCGACGCTGAAGAAGCGCTACAAGGATTCGGTTGCGGATGAACATCTT
AGTGTGCTTCTTTCAACGTTCAATCGTGACTCGTGGAGAGAGCTGGCTGT
CTTCTACGCTGGACTGGACTTTGTGAAGGAGGTGTACGTTGTTTGGCAGA
ATATGAACAAGACAAGAGAAGCTGCACCTCATGAAAAAGTGAAGTTCATA
TATCCAGATACTGATTCACTCAACAACCGATACCTTGCGTCTGATCTATC
GGAAGATTGTGTGTATATATGCGATGATGACATCTACGTACCGGCGCATA
GCCTGCGATCCGGGTTTGAGGTATGGAGACAAAACCCGGCGCGACTGGTT
GGCTTTTATCCGCGAATGTGGTATCCAGTGCCGGGATCGTACTCGGTGAA
CATCGCATCGGGATACAACATCGTGCTGACAAAAGGCATGTTTGCTCACC
GCTCTTTCTTAACCGCTTATTCACTGTTCTTGCCTAAACGGCTGGCGCGC
GTTGTTGACGAAGTGATGAACTGCGAGGATATTCTGCTGAATATGTTGGC
GGTCGGGATGACTGGGTTGCCACCATTGGCGGTCATGTCGAATGAAACGA
TTCATGACGTGGGCAAGGACAAGGGGATTTCGGGACCCAAAGGGTCAAGT
CATTTGCGTACTCGAGATTATTGTGTGCAAACGTTTATGCGACTTGGAAT
GGATCAAGCGGCACCAGCGAGTCGTGGAAGCATGTTGCCGCTGGCGAGAA
AGAACCATGTGATCGGAGCTGGTGACGACTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:2135541..2137172+

>Ggra3819.t1 ID=Ggra3819.t1|Name=Ggra3819.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00000850_pilon:2135541..2137172+ (Gracilaria gracilis GNS1m male)
ATGGCGGCACTGACTGCCTGCTTCTTCATTTTATATCTGCTGCTCCTCGC
GCAGCGTGCGTCTGCCTTTGAAAACGATGCGCTTGATTCCATTGATCAAC
CTGACCAAAACGCGTTCGCCACCCTGTTATGCGACGCAGAGACGCTTCCG
GCGGTCGAAGCGCTCGCGCACTCTATTCGACTGGCTAATCACGAAGAACC
GTTTCTTATCATTCTGCCCTCTTCCGTTCCGGACTTTGTGGTCGGTCGTA
TCAATAATTTGCCCAACACGCATGCGTATGAAGCAGATTCTTTGGCGTAC
CCTTTCAATTCCACTGCTGATCGAATGAGCATTCACAAACCATGCCGCTT
TCTCAAACTGCAGCTTTGGGGACTGACCAGGTGGAAAAAGATTCTCTTCT
TGGATGCCGATACAATTGTGCGTAAGAGCGTCGCAGAACTCTTCGATGCT
CCGGGTTTTAGTGCCGTGAAAGATCCGGTGGGCATGAACTACAATACTGG
AGTTATTGTCATTGAACCCTCCCGTTTTGTGTATTCACTCATTATTAACA
ACTACGTACATGCAGGTAGTTACAACGTGGGTGATCAGGGTGCGCTTAAT
GCTCTCATCGATTTTGACGCTTGGAATCCGTTGCCGATGAGATACAACAC
CTTCCATACTGCACCTCAGGAATCGTTTGAAGACGCGAAGATAGTACATT
ACTCGGGAGACGCGAAGCCATGGAACTTTTGGAAGGCTAGAGGACATGGA
AGGATTCCGACGCGTGCTTTTGTAGAGTGGTGTAACATGGCCGAGAACAC
GCCCACTGCTGCGTGTCATATGCGAGGTAATATTGATTATCGACAAGAAG
GGTCGACGCTGAAGAAGCGCTACAAGGATTCGGTTGCGGATGAACATCTT
AGTGTGCTTCTTTCAACGTTCAATCGTGACTCGTGGAGAGAGCTGGCTGT
CTTCTACGCTGGACTGGACTTTGTGAAGGAGGTGTACGTTGTTTGGCAGA
ATATGAACAAGACAAGAGAAGCTGCACCTCATGAAAAAGTGAAGTTCATA
TATCCAGATACTGATTCACTCAACAACCGATACCTTGCGTCTGATCTATC
GGAAGATTGTGTGTATATATGCGATGATGACATCTACGTACCGGCGCATA
GCCTGCGATCCGGGTTTGAGGTATGGAGACAAAACCCGGCGCGACTGGTT
GGCTTTTATCCGCGAATGTGGTATCCAGTGCCGGGATCGTACTCGGTGAA
CATCGCATCGGGATACAACATCGTGCTGACAAAAGGCATGTTTGCTCACC
GCTCTTTCTTAACCGCTTATTCACTGTTCTTGCCTAAACGGCTGGCGCGC
GTTGTTGACGAAGTGATGAACTGCGAGGATATTCTGCTGAATATGTTGGC
GGTCGGGATGACTGGGTTGCCACCATTGGCGGTCATGTCGAATGAAACGA
TTCATGACGTGGGCAAGGACAAGGGGATTTCGGGACCCAAAGGGTCAAGT
CATTTGCGTACTCGAGATTATTGTGTGCAAACGTTTATGCGACTTGGAAT
GGATCAAGCGGCACCAGCGAGTCGTGGAAGCATGTTGCCGCTGGCGAGAA
AGAACCATGTGATCGGAGCTGGTGACGACTAG
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