Ggra3817.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3817.t1
Unique NameGgra3817.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length522
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2128647..2130212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002671352.1
Preferred nameRFT1
PFAMsRft-1
Max annot lvl2759|Eukaryota
KEGG koko:K02738,ko:K06316,ko:K11369
KEGG TC2.A.66.3
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006810,GO:0006869,GO:0008150,GO:0009987,GO:0010876,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0031224,GO:0031984,GO:0033036,GO:0034203,GO:0034204,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071840,GO:0097035,GO:0098827,GO:1901264
Evalue4.05e-25
EggNOG OGsKOG2864@1|root,KOG2864@2759|Eukaryota
EC3.4.25.1
Descriptionglycolipid translocation
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03036,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3817Ggra3817Gracilaria gracilis GNS1m malegenetig00000850_pilon 2128647..2130212 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3817.t1.start1Ggra3817.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2128647..2128649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3817.t1.CDS1Ggra3817.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2128647..2130212 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3817.t1.exon1Ggra3817.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2128647..2130212 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3817.t1.stop1Ggra3817.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2130210..2130212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3817.t1Ggra3817.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2128647..2130212 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3817.t1 ID=Ggra3817.t1|Name=Ggra3817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=522bp
MFSSTDVARAAASGVRSHLLYQVSARLLSFLIKALAVRALGPSHFAFVEI
RLYLFVGITLLPTISGFRPVALRVASDARCAALCYFCSLLTIVLALVFGS
AMMYVQPEHWRASLLVVTSLIARAFAEPPLVFARRRQLYAQSSRARAVAT
VISAFSQTVAIRMVTSPKYASMAGALGHLTYSLSLGITMFLACGPERIPF
LSPSAFREAFRFEDLAMAIVSTGEGAIKYLLENGEGIILDVTCHDLAKAS
YKLVSNLGSVMARFFSEALEEQSFNVFHRLAPAFRKKGNESESETRRACL
DTLFIAHKAALVVSVLFALVGPAYSYPLLRFLYGPEYADHTSAPFLLDLY
FIYLVFMAANGVTEAFVSASASTSELKARTKFSTCLSFMYMAAMWYAAAS
YQAAGIIIVNCANMALRTCYSAWFFGRLTSYSPLAFFKSLPNVGILLLLF
VARHISKLSEAHFFGTASERIPFDTTFVDLVLRLLKHSLSGFLALGLFAT
GVLLFERKFLSKLWSFRSHQD*
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spliced messenger RNA

>Ggra3817.t1 ID=Ggra3817.t1|Name=Ggra3817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000850_pilon:2128647..2130212+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCTTCCACCGATGTGGCGCGCGCCGCCGCCAGCGGCGTGCGCTC
GCACCTGCTCTACCAAGTGAGTGCGCGCCTGCTGTCATTCCTCATCAAGG
CGCTGGCTGTGCGCGCCTTAGGTCCCTCGCACTTTGCCTTCGTCGAGATT
CGTCTCTACCTGTTCGTCGGTATTACCTTGCTTCCAACTATAAGCGGTTT
CCGCCCCGTCGCGCTCCGCGTCGCGTCAGATGCGCGATGTGCCGCCCTTT
GTTACTTTTGTTCTCTGCTAACTATTGTGCTCGCGCTCGTCTTTGGCTCC
GCCATGATGTACGTGCAGCCTGAGCATTGGCGCGCCAGTCTGCTGGTCGT
CACCAGTCTCATAGCGCGCGCTTTTGCCGAACCGCCGCTGGTGTTCGCAC
GCCGACGACAGCTTTATGCCCAGTCTTCTCGCGCGCGCGCAGTCGCCACT
GTCATAAGCGCATTCAGTCAGACTGTTGCTATCAGGATGGTCACAAGCCC
AAAATACGCTTCCATGGCTGGCGCGCTCGGCCATCTTACCTACTCGCTTA
GCCTGGGCATCACCATGTTCCTCGCATGCGGCCCAGAACGTATTCCGTTT
CTTTCACCCTCGGCCTTTCGCGAAGCCTTTAGGTTCGAGGACCTCGCCAT
GGCCATTGTTTCCACCGGCGAAGGTGCCATCAAGTACCTTCTGGAAAATG
GTGAGGGCATAATCCTCGACGTTACTTGCCATGATCTTGCCAAGGCCTCA
TACAAACTTGTTTCCAATTTGGGCAGCGTTATGGCCAGGTTTTTTAGCGA
GGCTTTGGAGGAACAGTCCTTCAATGTGTTTCACAGGCTTGCTCCGGCCT
TTCGGAAGAAAGGCAATGAGAGTGAAAGCGAAACACGAAGAGCTTGTCTT
GACACCCTGTTTATTGCGCACAAAGCCGCACTGGTCGTTTCCGTTTTGTT
TGCGCTTGTGGGGCCCGCGTATTCGTATCCGTTGTTGCGGTTTTTGTATG
GCCCAGAGTATGCGGACCATACCAGTGCTCCTTTCTTGCTAGACCTCTAT
TTCATCTACCTGGTTTTCATGGCTGCGAATGGAGTGACTGAGGCTTTTGT
TTCGGCCTCTGCCTCCACATCTGAACTGAAGGCGCGCACCAAATTTAGTA
CATGTTTGAGTTTCATGTACATGGCTGCCATGTGGTATGCAGCCGCTTCA
TACCAAGCTGCTGGAATAATCATAGTCAACTGCGCGAACATGGCCCTACG
AACATGCTACTCTGCCTGGTTTTTCGGTAGGCTTACCTCATATTCACCAC
TGGCCTTCTTCAAATCCTTGCCGAATGTGGGCATTTTGCTCCTTCTTTTT
GTGGCGAGACATATCTCAAAACTGAGCGAAGCTCATTTCTTTGGTACGGC
CTCGGAAAGGATACCATTCGACACCACTTTCGTCGACCTCGTGCTTAGAC
TTTTGAAGCACTCGCTCAGTGGGTTTCTCGCATTGGGGTTGTTTGCGACT
GGGGTACTCTTATTTGAAAGAAAATTCTTGTCTAAGTTATGGTCGTTTCG
CTCTCATCAGGACTAA
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protein sequence of Ggra3817.t1

>Ggra3817.t1 ID=Ggra3817.t1|Name=Ggra3817.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=522bp
MFSSTDVARAAASGVRSHLLYQVSARLLSFLIKALAVRALGPSHFAFVEI
RLYLFVGITLLPTISGFRPVALRVASDARCAALCYFCSLLTIVLALVFGS
AMMYVQPEHWRASLLVVTSLIARAFAEPPLVFARRRQLYAQSSRARAVAT
VISAFSQTVAIRMVTSPKYASMAGALGHLTYSLSLGITMFLACGPERIPF
LSPSAFREAFRFEDLAMAIVSTGEGAIKYLLENGEGIILDVTCHDLAKAS
YKLVSNLGSVMARFFSEALEEQSFNVFHRLAPAFRKKGNESESETRRACL
DTLFIAHKAALVVSVLFALVGPAYSYPLLRFLYGPEYADHTSAPFLLDLY
FIYLVFMAANGVTEAFVSASASTSELKARTKFSTCLSFMYMAAMWYAAAS
YQAAGIIIVNCANMALRTCYSAWFFGRLTSYSPLAFFKSLPNVGILLLLF
VARHISKLSEAHFFGTASERIPFDTTFVDLVLRLLKHSLSGFLALGLFAT
GVLLFERKFLSKLWSFRSHQD*
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mRNA from alignment at tig00000850_pilon:2128647..2130212+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3817.t1 ID=Ggra3817.t1|Name=Ggra3817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000850_pilon:2128647..2130212+ (Gracilaria gracilis GNS1m male)
ATGTTTTCTTCCACCGATGTGGCGCGCGCCGCCGCCAGCGGCGTGCGCTC
GCACCTGCTCTACCAAGTGAGTGCGCGCCTGCTGTCATTCCTCATCAAGG
CGCTGGCTGTGCGCGCCTTAGGTCCCTCGCACTTTGCCTTCGTCGAGATT
CGTCTCTACCTGTTCGTCGGTATTACCTTGCTTCCAACTATAAGCGGTTT
CCGCCCCGTCGCGCTCCGCGTCGCGTCAGATGCGCGATGTGCCGCCCTTT
GTTACTTTTGTTCTCTGCTAACTATTGTGCTCGCGCTCGTCTTTGGCTCC
GCCATGATGTACGTGCAGCCTGAGCATTGGCGCGCCAGTCTGCTGGTCGT
CACCAGTCTCATAGCGCGCGCTTTTGCCGAACCGCCGCTGGTGTTCGCAC
GCCGACGACAGCTTTATGCCCAGTCTTCTCGCGCGCGCGCAGTCGCCACT
GTCATAAGCGCATTCAGTCAGACTGTTGCTATCAGGATGGTCACAAGCCC
AAAATACGCTTCCATGGCTGGCGCGCTCGGCCATCTTACCTACTCGCTTA
GCCTGGGCATCACCATGTTCCTCGCATGCGGCCCAGAACGTATTCCGTTT
CTTTCACCCTCGGCCTTTCGCGAAGCCTTTAGGTTCGAGGACCTCGCCAT
GGCCATTGTTTCCACCGGCGAAGGTGCCATCAAGTACCTTCTGGAAAATG
GTGAGGGCATAATCCTCGACGTTACTTGCCATGATCTTGCCAAGGCCTCA
TACAAACTTGTTTCCAATTTGGGCAGCGTTATGGCCAGGTTTTTTAGCGA
GGCTTTGGAGGAACAGTCCTTCAATGTGTTTCACAGGCTTGCTCCGGCCT
TTCGGAAGAAAGGCAATGAGAGTGAAAGCGAAACACGAAGAGCTTGTCTT
GACACCCTGTTTATTGCGCACAAAGCCGCACTGGTCGTTTCCGTTTTGTT
TGCGCTTGTGGGGCCCGCGTATTCGTATCCGTTGTTGCGGTTTTTGTATG
GCCCAGAGTATGCGGACCATACCAGTGCTCCTTTCTTGCTAGACCTCTAT
TTCATCTACCTGGTTTTCATGGCTGCGAATGGAGTGACTGAGGCTTTTGT
TTCGGCCTCTGCCTCCACATCTGAACTGAAGGCGCGCACCAAATTTAGTA
CATGTTTGAGTTTCATGTACATGGCTGCCATGTGGTATGCAGCCGCTTCA
TACCAAGCTGCTGGAATAATCATAGTCAACTGCGCGAACATGGCCCTACG
AACATGCTACTCTGCCTGGTTTTTCGGTAGGCTTACCTCATATTCACCAC
TGGCCTTCTTCAAATCCTTGCCGAATGTGGGCATTTTGCTCCTTCTTTTT
GTGGCGAGACATATCTCAAAACTGAGCGAAGCTCATTTCTTTGGTACGGC
CTCGGAAAGGATACCATTCGACACCACTTTCGTCGACCTCGTGCTTAGAC
TTTTGAAGCACTCGCTCAGTGGGTTTCTCGCATTGGGGTTGTTTGCGACT
GGGGTACTCTTATTTGAAAGAAAATTCTTGTCTAAGTTATGGTCGTTTCG
CTCTCATCAGGACTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2128647..2130212+

>Ggra3817.t1 ID=Ggra3817.t1|Name=Ggra3817.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1566bp|location=Sequence derived from alignment at tig00000850_pilon:2128647..2130212+ (Gracilaria gracilis GNS1m male)
ATGTTTTCTTCCACCGATGTGGCGCGCGCCGCCGCCAGCGGCGTGCGCTC
GCACCTGCTCTACCAAGTGAGTGCGCGCCTGCTGTCATTCCTCATCAAGG
CGCTGGCTGTGCGCGCCTTAGGTCCCTCGCACTTTGCCTTCGTCGAGATT
CGTCTCTACCTGTTCGTCGGTATTACCTTGCTTCCAACTATAAGCGGTTT
CCGCCCCGTCGCGCTCCGCGTCGCGTCAGATGCGCGATGTGCCGCCCTTT
GTTACTTTTGTTCTCTGCTAACTATTGTGCTCGCGCTCGTCTTTGGCTCC
GCCATGATGTACGTGCAGCCTGAGCATTGGCGCGCCAGTCTGCTGGTCGT
CACCAGTCTCATAGCGCGCGCTTTTGCCGAACCGCCGCTGGTGTTCGCAC
GCCGACGACAGCTTTATGCCCAGTCTTCTCGCGCGCGCGCAGTCGCCACT
GTCATAAGCGCATTCAGTCAGACTGTTGCTATCAGGATGGTCACAAGCCC
AAAATACGCTTCCATGGCTGGCGCGCTCGGCCATCTTACCTACTCGCTTA
GCCTGGGCATCACCATGTTCCTCGCATGCGGCCCAGAACGTATTCCGTTT
CTTTCACCCTCGGCCTTTCGCGAAGCCTTTAGGTTCGAGGACCTCGCCAT
GGCCATTGTTTCCACCGGCGAAGGTGCCATCAAGTACCTTCTGGAAAATG
GTGAGGGCATAATCCTCGACGTTACTTGCCATGATCTTGCCAAGGCCTCA
TACAAACTTGTTTCCAATTTGGGCAGCGTTATGGCCAGGTTTTTTAGCGA
GGCTTTGGAGGAACAGTCCTTCAATGTGTTTCACAGGCTTGCTCCGGCCT
TTCGGAAGAAAGGCAATGAGAGTGAAAGCGAAACACGAAGAGCTTGTCTT
GACACCCTGTTTATTGCGCACAAAGCCGCACTGGTCGTTTCCGTTTTGTT
TGCGCTTGTGGGGCCCGCGTATTCGTATCCGTTGTTGCGGTTTTTGTATG
GCCCAGAGTATGCGGACCATACCAGTGCTCCTTTCTTGCTAGACCTCTAT
TTCATCTACCTGGTTTTCATGGCTGCGAATGGAGTGACTGAGGCTTTTGT
TTCGGCCTCTGCCTCCACATCTGAACTGAAGGCGCGCACCAAATTTAGTA
CATGTTTGAGTTTCATGTACATGGCTGCCATGTGGTATGCAGCCGCTTCA
TACCAAGCTGCTGGAATAATCATAGTCAACTGCGCGAACATGGCCCTACG
AACATGCTACTCTGCCTGGTTTTTCGGTAGGCTTACCTCATATTCACCAC
TGGCCTTCTTCAAATCCTTGCCGAATGTGGGCATTTTGCTCCTTCTTTTT
GTGGCGAGACATATCTCAAAACTGAGCGAAGCTCATTTCTTTGGTACGGC
CTCGGAAAGGATACCATTCGACACCACTTTCGTCGACCTCGTGCTTAGAC
TTTTGAAGCACTCGCTCAGTGGGTTTCTCGCATTGGGGTTGTTTGCGACT
GGGGTACTCTTATTTGAAAGAAAATTCTTGTCTAAGTTATGGTCGTTTCG
CTCTCATCAGGACTAA
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