Ggra3816.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3816.t1
Unique NameGgra3816.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2126779..2128161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705872.1
PFAMsPP2C
Max annot lvl2759|Eukaryota
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Evalue1.77e-60
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3816Ggra3816Gracilaria gracilis GNS1m malegenetig00000850_pilon 2126779..2128161 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3816.t1.start1Ggra3816.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2126779..2126781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3816.t1.CDS1Ggra3816.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2126779..2128161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3816.t1.exon1Ggra3816.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2126779..2128161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3816.t1.stop1Ggra3816.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2128159..2128161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3816.t1Ggra3816.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2126779..2128161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3816.t1 ID=Ggra3816.t1|Name=Ggra3816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=461bp
MAPPPVFDKLINVKYSRRKSNQTPSGDDEQPSANAQLKATIRRALGTAAN
RTFLTSTPKGQSVPSPTSTSQDNSPVAILPNHPPEPVDPARLTADDGTER
HFDVTTDHAVGACSSAGWQLLPPTTPGAPPLRSRKANQDAYSVMAPFQQS
LLVGVYDGHGAYGRAVSQLVRDRVPITLRETLGSSDARSRNADDRRRNVV
RAFTKAFSDAERTLRDGKHNIDHAFSGTTATCILLDAEQVYVAWAGDSRA
VIGAREGATLRAVDVSWDQKPSRADEKKRVRMAGARVTRWKKNVGPQRVW
LPNEWLPGLAMTRSIGDTVLSKHGVTTTPEVTVTRLGSREQFVVVASDGV
WEFMSSEEVVHMVDSLRSRSLSSEDAARALVKEAGRRWNMHEQVVDDITA
VVVYLNGVSVERRERSIREVLRTRRRMRENGVVGVPMRVSPDGRLLSFDA
ENDGGGDDDE*
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spliced messenger RNA

>Ggra3816.t1 ID=Ggra3816.t1|Name=Ggra3816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000850_pilon:2126779..2128161+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCCCGCCCGTCTTCGACAAGCTCATCAACGTCAAGTATTCGAG
AAGGAAGAGCAATCAGACGCCATCTGGTGACGACGAACAGCCCTCGGCCA
ACGCGCAGCTCAAAGCCACCATCCGTCGAGCGCTCGGCACCGCCGCCAAC
CGCACCTTCCTAACTTCAACTCCCAAGGGACAATCCGTGCCCTCCCCGAC
TTCTACCTCGCAGGATAACTCTCCCGTAGCCATCCTCCCCAATCATCCAC
CCGAGCCCGTCGACCCCGCCAGACTCACCGCCGACGACGGCACCGAGCGA
CACTTCGATGTCACCACGGATCACGCCGTCGGCGCTTGCTCTTCCGCCGG
CTGGCAGCTACTACCGCCAACCACGCCGGGCGCGCCGCCGCTGCGCTCGC
GCAAGGCGAATCAGGACGCGTACAGCGTGATGGCACCGTTTCAACAATCG
TTGTTGGTGGGAGTGTACGATGGTCATGGCGCGTACGGACGCGCGGTGAG
TCAGCTGGTGCGCGACCGCGTGCCCATCACTCTCCGCGAAACGTTGGGCT
CATCGGATGCTCGCAGCCGCAACGCCGACGATCGTCGGCGCAACGTGGTG
CGCGCATTCACTAAGGCGTTCAGTGATGCTGAACGCACGCTACGTGACGG
CAAGCATAACATTGACCACGCCTTTTCTGGAACTACGGCAACTTGCATTC
TGCTGGACGCGGAGCAAGTGTACGTTGCGTGGGCTGGCGATTCTAGGGCT
GTGATTGGCGCCAGAGAAGGCGCGACGCTGCGCGCTGTGGATGTGAGCTG
GGATCAGAAGCCCAGCCGCGCAGATGAGAAGAAGAGAGTTCGTATGGCTG
GAGCGCGAGTGACGCGCTGGAAGAAGAACGTGGGTCCGCAACGCGTGTGG
CTGCCCAACGAATGGCTACCGGGTCTGGCCATGACGCGCAGCATCGGCGA
TACAGTGCTGTCCAAGCACGGGGTGACGACGACGCCGGAAGTGACCGTTA
CGCGGCTAGGCAGCCGCGAACAGTTCGTGGTGGTGGCGTCGGACGGCGTG
TGGGAGTTCATGTCCAGCGAGGAGGTAGTGCACATGGTGGACTCGCTGCG
AAGCCGATCACTGAGCTCGGAGGACGCGGCCAGGGCGCTGGTCAAGGAGG
CCGGCCGTCGCTGGAACATGCACGAGCAGGTGGTGGATGACATCACGGCC
GTGGTGGTGTACCTGAACGGCGTGAGCGTGGAGCGGCGCGAGCGCAGCAT
CCGCGAGGTGCTCCGCACGCGGCGCCGGATGCGCGAGAACGGCGTGGTGG
GCGTGCCCATGCGCGTCTCGCCGGACGGCCGCCTGCTGTCGTTcgacgcc
gaaaacgacggcggcggcgacgacgacgagtga
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protein sequence of Ggra3816.t1

>Ggra3816.t1 ID=Ggra3816.t1|Name=Ggra3816.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=461bp
MAPPPVFDKLINVKYSRRKSNQTPSGDDEQPSANAQLKATIRRALGTAAN
RTFLTSTPKGQSVPSPTSTSQDNSPVAILPNHPPEPVDPARLTADDGTER
HFDVTTDHAVGACSSAGWQLLPPTTPGAPPLRSRKANQDAYSVMAPFQQS
LLVGVYDGHGAYGRAVSQLVRDRVPITLRETLGSSDARSRNADDRRRNVV
RAFTKAFSDAERTLRDGKHNIDHAFSGTTATCILLDAEQVYVAWAGDSRA
VIGAREGATLRAVDVSWDQKPSRADEKKRVRMAGARVTRWKKNVGPQRVW
LPNEWLPGLAMTRSIGDTVLSKHGVTTTPEVTVTRLGSREQFVVVASDGV
WEFMSSEEVVHMVDSLRSRSLSSEDAARALVKEAGRRWNMHEQVVDDITA
VVVYLNGVSVERRERSIREVLRTRRRMRENGVVGVPMRVSPDGRLLSFDA
ENDGGGDDDE*
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mRNA from alignment at tig00000850_pilon:2126779..2128161+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3816.t1 ID=Ggra3816.t1|Name=Ggra3816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1383bp|location=Sequence derived from alignment at tig00000850_pilon:2126779..2128161+ (Gracilaria gracilis GNS1m male)
ATGGCGCCCCCGCCCGTCTTCGACAAGCTCATCAACGTCAAGTATTCGAG
AAGGAAGAGCAATCAGACGCCATCTGGTGACGACGAACAGCCCTCGGCCA
ACGCGCAGCTCAAAGCCACCATCCGTCGAGCGCTCGGCACCGCCGCCAAC
CGCACCTTCCTAACTTCAACTCCCAAGGGACAATCCGTGCCCTCCCCGAC
TTCTACCTCGCAGGATAACTCTCCCGTAGCCATCCTCCCCAATCATCCAC
CCGAGCCCGTCGACCCCGCCAGACTCACCGCCGACGACGGCACCGAGCGA
CACTTCGATGTCACCACGGATCACGCCGTCGGCGCTTGCTCTTCCGCCGG
CTGGCAGCTACTACCGCCAACCACGCCGGGCGCGCCGCCGCTGCGCTCGC
GCAAGGCGAATCAGGACGCGTACAGCGTGATGGCACCGTTTCAACAATCG
TTGTTGGTGGGAGTGTACGATGGTCATGGCGCGTACGGACGCGCGGTGAG
TCAGCTGGTGCGCGACCGCGTGCCCATCACTCTCCGCGAAACGTTGGGCT
CATCGGATGCTCGCAGCCGCAACGCCGACGATCGTCGGCGCAACGTGGTG
CGCGCATTCACTAAGGCGTTCAGTGATGCTGAACGCACGCTACGTGACGG
CAAGCATAACATTGACCACGCCTTTTCTGGAACTACGGCAACTTGCATTC
TGCTGGACGCGGAGCAAGTGTACGTTGCGTGGGCTGGCGATTCTAGGGCT
GTGATTGGCGCCAGAGAAGGCGCGACGCTGCGCGCTGTGGATGTGAGCTG
GGATCAGAAGCCCAGCCGCGCAGATGAGAAGAAGAGAGTTCGTATGGCTG
GAGCGCGAGTGACGCGCTGGAAGAAGAACGTGGGTCCGCAACGCGTGTGG
CTGCCCAACGAATGGCTACCGGGTCTGGCCATGACGCGCAGCATCGGCGA
TACAGTGCTGTCCAAGCACGGGGTGACGACGACGCCGGAAGTGACCGTTA
CGCGGCTAGGCAGCCGCGAACAGTTCGTGGTGGTGGCGTCGGACGGCGTG
TGGGAGTTCATGTCCAGCGAGGAGGTAGTGCACATGGTGGACTCGCTGCG
AAGCCGATCACTGAGCTCGGAGGACGCGGCCAGGGCGCTGGTCAAGGAGG
CCGGCCGTCGCTGGAACATGCACGAGCAGGTGGTGGATGACATCACGGCC
GTGGTGGTGTACCTGAACGGCGTGAGCGTGGAGCGGCGCGAGCGCAGCAT
CCGCGAGGTGCTCCGCACGCGGCGCCGGATGCGCGAGAACGGCGTGGTGG
GCGTGCCCATGCGCGTCTCGCCGGACGGCCGCCTGCTGTCGTTcgacgcc
gaaaacgacggcggcggcgacgacgacgagtga
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Coding sequence (CDS) from alignment at tig00000850_pilon:2126779..2128161+

>Ggra3816.t1 ID=Ggra3816.t1|Name=Ggra3816.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1383bp|location=Sequence derived from alignment at tig00000850_pilon:2126779..2128161+ (Gracilaria gracilis GNS1m male)
ATGGCGCCCCCGCCCGTCTTCGACAAGCTCATCAACGTCAAGTATTCGAG
AAGGAAGAGCAATCAGACGCCATCTGGTGACGACGAACAGCCCTCGGCCA
ACGCGCAGCTCAAAGCCACCATCCGTCGAGCGCTCGGCACCGCCGCCAAC
CGCACCTTCCTAACTTCAACTCCCAAGGGACAATCCGTGCCCTCCCCGAC
TTCTACCTCGCAGGATAACTCTCCCGTAGCCATCCTCCCCAATCATCCAC
CCGAGCCCGTCGACCCCGCCAGACTCACCGCCGACGACGGCACCGAGCGA
CACTTCGATGTCACCACGGATCACGCCGTCGGCGCTTGCTCTTCCGCCGG
CTGGCAGCTACTACCGCCAACCACGCCGGGCGCGCCGCCGCTGCGCTCGC
GCAAGGCGAATCAGGACGCGTACAGCGTGATGGCACCGTTTCAACAATCG
TTGTTGGTGGGAGTGTACGATGGTCATGGCGCGTACGGACGCGCGGTGAG
TCAGCTGGTGCGCGACCGCGTGCCCATCACTCTCCGCGAAACGTTGGGCT
CATCGGATGCTCGCAGCCGCAACGCCGACGATCGTCGGCGCAACGTGGTG
CGCGCATTCACTAAGGCGTTCAGTGATGCTGAACGCACGCTACGTGACGG
CAAGCATAACATTGACCACGCCTTTTCTGGAACTACGGCAACTTGCATTC
TGCTGGACGCGGAGCAAGTGTACGTTGCGTGGGCTGGCGATTCTAGGGCT
GTGATTGGCGCCAGAGAAGGCGCGACGCTGCGCGCTGTGGATGTGAGCTG
GGATCAGAAGCCCAGCCGCGCAGATGAGAAGAAGAGAGTTCGTATGGCTG
GAGCGCGAGTGACGCGCTGGAAGAAGAACGTGGGTCCGCAACGCGTGTGG
CTGCCCAACGAATGGCTACCGGGTCTGGCCATGACGCGCAGCATCGGCGA
TACAGTGCTGTCCAAGCACGGGGTGACGACGACGCCGGAAGTGACCGTTA
CGCGGCTAGGCAGCCGCGAACAGTTCGTGGTGGTGGCGTCGGACGGCGTG
TGGGAGTTCATGTCCAGCGAGGAGGTAGTGCACATGGTGGACTCGCTGCG
AAGCCGATCACTGAGCTCGGAGGACGCGGCCAGGGCGCTGGTCAAGGAGG
CCGGCCGTCGCTGGAACATGCACGAGCAGGTGGTGGATGACATCACGGCC
GTGGTGGTGTACCTGAACGGCGTGAGCGTGGAGCGGCGCGAGCGCAGCAT
CCGCGAGGTGCTCCGCACGCGGCGCCGGATGCGCGAGAACGGCGTGGTGG
GCGTGCCCATGCGCGTCTCGCCGGACGGCCGCCTGCTGTCGTTcgacgcc
gaaaacgacggcggcggcgacgacgacgagtga
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