Ggra3811.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3811.t1
Unique NameGgra3811.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2111377..2112816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705666.1
Preferred nameCYB5D2
PFAMsCyt-b5
Max annot lvl2759|Eukaryota
KEGG rclassRC00109,RC00110,RC00158
KEGG koko:K00287
KEGG ReactionR00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathwayko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG ModuleM00126,M00840
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0012505,GO:0016020,GO:0020037,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046906,GO:0048037,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0097159,GO:1901363,GO:2000026
Evalue1.32e-148
EggNOG OGsKOG1110@1|root,KOG1108@2759|Eukaryota
EC1.5.1.3
Descriptionheme binding
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3811Ggra3811Gracilaria gracilis GNS1m malegenetig00000850_pilon 2111377..2112816 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3811.t1.start1Ggra3811.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2111377..2111379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3811.t1.CDS1Ggra3811.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2111377..2112816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3811.t1.exon1Ggra3811.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2111377..2112816 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3811.t1.stop1Ggra3811.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2112814..2112816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3811.t1Ggra3811.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2111377..2112816 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3811.t1 ID=Ggra3811.t1|Name=Ggra3811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp
MAERSSAFVNNLPLQGSQCIRSSSFIPAVSKRAEQSLEFSRHATKRASRV
IAPTAVLSEQPLDHASSRPSPGSLQHSGVFSVNPDLLDSDNEENLRGFVK
TRGSLVPGQEFVFWWVGDIYGLIDDQPTKHLFSFEGYNIGRMVRVDGGWR
LLSREVGLYKHPRTGRILDMWENPYTGATNQCVHVWNDPVNQQFLLKGPR
GSFKVPTTTYEDDVYWHAEVFLNYKSPLPRSDFPDNVGSDTYQSAEMFQF
FSTKQQLKSEKPSADCVISWVRVGQWLPWMEMGDRSGRLVYHCRGRKLVN
GFADLPDHVQSYILDNHPEYSSAPTSFTTPNETSWTYMRKLLANRGTPRA
DGRIARPASTELQLIRGKDKVAQPPKDLSRDQLRRYNGEGVNLPVLLAVD
GDVYDVSSAKRHYGPGETYHCLVGRDASWALVSGDLSEEALQDSDAHLRD
RLDDKQLSDLKHWSEFFAKNYPRVSRLVD*
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spliced messenger RNA

>Ggra3811.t1 ID=Ggra3811.t1|Name=Ggra3811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000850_pilon:2111377..2112816+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAACGTAGCTCTGCTTTTGTCAACAACTTACCGCTTCAGGGCAG
TCAATGCATCAGGTCTTCTTCATTCATCCCAGCCGTTTCCAAGCGCGCTG
AACAATCGCTCGAATTCAGTCGTCATGCTACCAAGCGGGCGTCGAGAGTC
ATCGCACCAACAGCCGTGCTGTCGGAACAGCCACTCGATCACGCGTCGTC
GCGCCCTTCCCCGGGATCTCTTCAGCATTCTGGCGTATTCAGCGTGAATC
CGGACCTGCTCGATAGTGACAATGAAGAAAACTTGCGCGGGTTTGTCAAG
ACCAGAGGCAGTCTTGTACCTGGTCAAGAATTCGTGTTCTGGTGGGTAGG
TGATATATATGGGCTCATTGACGATCAGCCGACAAAGCATCTTTTCTCCT
TTGAGGGTTACAATATTGGGCGAATGGTACGTGTAGATGGTGGATGGAGG
CTGCTTTCGAGGGAAGTGGGATTGTACAAGCATCCTCGAACGGGTCGTAT
TCTTGACATGTGGGAGAATCCATACACCGGTGCTACAAACCAATGCGTAC
ATGTGTGGAATGATCCTGTTAACCAACAGTTTCTGTTGAAGGGACCACGC
GGTTCATTCAAGGTTCCCACCACAACATATGAAGATGATGTGTACTGGCA
TGCTGAAGTGTTCCTCAACTACAAGTCGCCACTGCCTCGGTCAGACTTCC
CCGATAACGTCGGCTCTGATACGTACCAATCTGCCGAAATGTTCCAGTTC
TTCTCGACAAAGCAGCAACTAAAGTCTGAAAAACCGAGTGCGGACTGTGT
CATTAGTTGGGTGAGAGTTGGGCAATGGCTTCCATGGATGGAAATGGGTG
ACAGATCCGGTCGTCTTGTGTATCATTGTCGTGGAAGAAAACTTGTGAAT
GGCTTCGCAGACCTACCGGACCATGTACAATCATACATTCTCGATAACCA
TCCTGAATACAGCTCCGCTCCAACCAGTTTCACCACACCGAATGAGACGA
GCTGGACGTATATGCGGAAGCTGCTTGCAAATCGTGGGACACCTCGAGCA
GACGGTCGCATAGCGCGCCCTGCGTCCACGGAATTGCAACTGATTCGAGG
TAAGGACAAGGTAGCGCAACCACCAAAAGACTTGTCCAGAGATCAATTGC
GACGCTACAACGGGGAGGGTGTGAACCTACCTGTACTTTTGGCTGTAGAT
GGTGATGTATATGACGTGAGCTCTGCGAAGAGACATTATGGTCCCGGTGA
AACCTATCATTGCTTAGTTGGACGCGACGCTAGCTGGGCCCTTGTGAGCG
GAGACCTCTCCGAAGAAGCTCTTCAGGACAGTGATGCTCATCTGAGAGAT
CGTCTCGATGACAAGCAGCTTTCCGACTTGAAGCACTGGAGCGAATTCTT
TGCAAAGAACTACCCGCGCGTCTCAAGGCTTGTCGACTAG
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protein sequence of Ggra3811.t1

>Ggra3811.t1 ID=Ggra3811.t1|Name=Ggra3811.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=480bp
MAERSSAFVNNLPLQGSQCIRSSSFIPAVSKRAEQSLEFSRHATKRASRV
IAPTAVLSEQPLDHASSRPSPGSLQHSGVFSVNPDLLDSDNEENLRGFVK
TRGSLVPGQEFVFWWVGDIYGLIDDQPTKHLFSFEGYNIGRMVRVDGGWR
LLSREVGLYKHPRTGRILDMWENPYTGATNQCVHVWNDPVNQQFLLKGPR
GSFKVPTTTYEDDVYWHAEVFLNYKSPLPRSDFPDNVGSDTYQSAEMFQF
FSTKQQLKSEKPSADCVISWVRVGQWLPWMEMGDRSGRLVYHCRGRKLVN
GFADLPDHVQSYILDNHPEYSSAPTSFTTPNETSWTYMRKLLANRGTPRA
DGRIARPASTELQLIRGKDKVAQPPKDLSRDQLRRYNGEGVNLPVLLAVD
GDVYDVSSAKRHYGPGETYHCLVGRDASWALVSGDLSEEALQDSDAHLRD
RLDDKQLSDLKHWSEFFAKNYPRVSRLVD*
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mRNA from alignment at tig00000850_pilon:2111377..2112816+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3811.t1 ID=Ggra3811.t1|Name=Ggra3811.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000850_pilon:2111377..2112816+ (Gracilaria gracilis GNS1m male)
ATGGCAGAACGTAGCTCTGCTTTTGTCAACAACTTACCGCTTCAGGGCAG
TCAATGCATCAGGTCTTCTTCATTCATCCCAGCCGTTTCCAAGCGCGCTG
AACAATCGCTCGAATTCAGTCGTCATGCTACCAAGCGGGCGTCGAGAGTC
ATCGCACCAACAGCCGTGCTGTCGGAACAGCCACTCGATCACGCGTCGTC
GCGCCCTTCCCCGGGATCTCTTCAGCATTCTGGCGTATTCAGCGTGAATC
CGGACCTGCTCGATAGTGACAATGAAGAAAACTTGCGCGGGTTTGTCAAG
ACCAGAGGCAGTCTTGTACCTGGTCAAGAATTCGTGTTCTGGTGGGTAGG
TGATATATATGGGCTCATTGACGATCAGCCGACAAAGCATCTTTTCTCCT
TTGAGGGTTACAATATTGGGCGAATGGTACGTGTAGATGGTGGATGGAGG
CTGCTTTCGAGGGAAGTGGGATTGTACAAGCATCCTCGAACGGGTCGTAT
TCTTGACATGTGGGAGAATCCATACACCGGTGCTACAAACCAATGCGTAC
ATGTGTGGAATGATCCTGTTAACCAACAGTTTCTGTTGAAGGGACCACGC
GGTTCATTCAAGGTTCCCACCACAACATATGAAGATGATGTGTACTGGCA
TGCTGAAGTGTTCCTCAACTACAAGTCGCCACTGCCTCGGTCAGACTTCC
CCGATAACGTCGGCTCTGATACGTACCAATCTGCCGAAATGTTCCAGTTC
TTCTCGACAAAGCAGCAACTAAAGTCTGAAAAACCGAGTGCGGACTGTGT
CATTAGTTGGGTGAGAGTTGGGCAATGGCTTCCATGGATGGAAATGGGTG
ACAGATCCGGTCGTCTTGTGTATCATTGTCGTGGAAGAAAACTTGTGAAT
GGCTTCGCAGACCTACCGGACCATGTACAATCATACATTCTCGATAACCA
TCCTGAATACAGCTCCGCTCCAACCAGTTTCACCACACCGAATGAGACGA
GCTGGACGTATATGCGGAAGCTGCTTGCAAATCGTGGGACACCTCGAGCA
GACGGTCGCATAGCGCGCCCTGCGTCCACGGAATTGCAACTGATTCGAGG
TAAGGACAAGGTAGCGCAACCACCAAAAGACTTGTCCAGAGATCAATTGC
GACGCTACAACGGGGAGGGTGTGAACCTACCTGTACTTTTGGCTGTAGAT
GGTGATGTATATGACGTGAGCTCTGCGAAGAGACATTATGGTCCCGGTGA
AACCTATCATTGCTTAGTTGGACGCGACGCTAGCTGGGCCCTTGTGAGCG
GAGACCTCTCCGAAGAAGCTCTTCAGGACAGTGATGCTCATCTGAGAGAT
CGTCTCGATGACAAGCAGCTTTCCGACTTGAAGCACTGGAGCGAATTCTT
TGCAAAGAACTACCCGCGCGTCTCAAGGCTTGTCGACTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:2111377..2112816+

>Ggra3811.t1 ID=Ggra3811.t1|Name=Ggra3811.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000850_pilon:2111377..2112816+ (Gracilaria gracilis GNS1m male)
ATGGCAGAACGTAGCTCTGCTTTTGTCAACAACTTACCGCTTCAGGGCAG
TCAATGCATCAGGTCTTCTTCATTCATCCCAGCCGTTTCCAAGCGCGCTG
AACAATCGCTCGAATTCAGTCGTCATGCTACCAAGCGGGCGTCGAGAGTC
ATCGCACCAACAGCCGTGCTGTCGGAACAGCCACTCGATCACGCGTCGTC
GCGCCCTTCCCCGGGATCTCTTCAGCATTCTGGCGTATTCAGCGTGAATC
CGGACCTGCTCGATAGTGACAATGAAGAAAACTTGCGCGGGTTTGTCAAG
ACCAGAGGCAGTCTTGTACCTGGTCAAGAATTCGTGTTCTGGTGGGTAGG
TGATATATATGGGCTCATTGACGATCAGCCGACAAAGCATCTTTTCTCCT
TTGAGGGTTACAATATTGGGCGAATGGTACGTGTAGATGGTGGATGGAGG
CTGCTTTCGAGGGAAGTGGGATTGTACAAGCATCCTCGAACGGGTCGTAT
TCTTGACATGTGGGAGAATCCATACACCGGTGCTACAAACCAATGCGTAC
ATGTGTGGAATGATCCTGTTAACCAACAGTTTCTGTTGAAGGGACCACGC
GGTTCATTCAAGGTTCCCACCACAACATATGAAGATGATGTGTACTGGCA
TGCTGAAGTGTTCCTCAACTACAAGTCGCCACTGCCTCGGTCAGACTTCC
CCGATAACGTCGGCTCTGATACGTACCAATCTGCCGAAATGTTCCAGTTC
TTCTCGACAAAGCAGCAACTAAAGTCTGAAAAACCGAGTGCGGACTGTGT
CATTAGTTGGGTGAGAGTTGGGCAATGGCTTCCATGGATGGAAATGGGTG
ACAGATCCGGTCGTCTTGTGTATCATTGTCGTGGAAGAAAACTTGTGAAT
GGCTTCGCAGACCTACCGGACCATGTACAATCATACATTCTCGATAACCA
TCCTGAATACAGCTCCGCTCCAACCAGTTTCACCACACCGAATGAGACGA
GCTGGACGTATATGCGGAAGCTGCTTGCAAATCGTGGGACACCTCGAGCA
GACGGTCGCATAGCGCGCCCTGCGTCCACGGAATTGCAACTGATTCGAGG
TAAGGACAAGGTAGCGCAACCACCAAAAGACTTGTCCAGAGATCAATTGC
GACGCTACAACGGGGAGGGTGTGAACCTACCTGTACTTTTGGCTGTAGAT
GGTGATGTATATGACGTGAGCTCTGCGAAGAGACATTATGGTCCCGGTGA
AACCTATCATTGCTTAGTTGGACGCGACGCTAGCTGGGCCCTTGTGAGCG
GAGACCTCTCCGAAGAAGCTCTTCAGGACAGTGATGCTCATCTGAGAGAT
CGTCTCGATGACAAGCAGCTTTCCGACTTGAAGCACTGGAGCGAATTCTT
TGCAAAGAACTACCCGCGCGTCTCAAGGCTTGTCGACTAG
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