Ggra3806.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3806.t1
Unique NameGgra3806.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2092439..2093863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3806Ggra3806Gracilaria gracilis GNS1m malegenetig00000850_pilon 2092439..2093863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3806.t1Ggra3806.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2092439..2093863 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3806.t1.start1Ggra3806.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2092439..2092441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3806.t1.CDS1Ggra3806.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2092439..2092750 +
Ggra3806.t1.CDS2Ggra3806.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2092820..2092913 +
Ggra3806.t1.CDS3Ggra3806.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2093031..2093863 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3806.t1.exon1Ggra3806.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2092439..2092750 +
Ggra3806.t1.exon2Ggra3806.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2092820..2092913 +
Ggra3806.t1.exon3Ggra3806.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 2093031..2093863 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3806.t1.intron1Ggra3806.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2092751..2092819 +
Ggra3806.t1.intron2Ggra3806.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2092914..2093030 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3806.t1.stop1Ggra3806.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2093861..2093863 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3806.t1 ID=Ggra3806.t1|Name=Ggra3806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=413bp
MPIPKAQVFALGAHEERSARLSVLTRLMSVHLVQEGRLVISGSRYALAVA
PERLQINRDHFSARLAPPEHSVPHSTLAQPSSVWIARWVPAAQVEAVSVQ
IANPLGLNQPLYVFHVHWVHPVEVVLEHAANVELAPLVVPIVATGVGQDS
FRVSLGPLPAKDAQLEHSVPLQQQNHLPSALPAPLERSVETVPVFVLNVE
PVLLGIAKEQLLAGVAPVGRLAEPWEPRPEIRVHRAQLGLSALMERPLVP
DVAPVVTPTKLGHHRARGAQLGRLAPLREPPQHLLVSLVPRAPLVKDLFG
AVRGVGQGHLLNRSGQGVAHLAQQELSVWWKLPRRVLAARTVLLGRLVNQ
AQSDALDAAKASSQICPDQELVALAPQEQSAQSLGRYPLMFVSHALLEPA
TLVVADSVSRWL*
back to top

spliced messenger RNA

>Ggra3806.t1 ID=Ggra3806.t1|Name=Ggra3806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000850_pilon:2092439..2093863+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATACCGAAGGCTCAAGTTTTTGCACTTGGTGCCCACGAGGAACG
TTCAGCACGGTTATCGGTGCTGACTCGGCTGATGTCTGTACACCTTGTCC
AAGAGGGACGTTTAGTGATTTCGGGGAGTCGGTATGCACTCGCTGTGGCC
CCGGAACGTTTGCAGATCAACCGGGATCATTTTTCTGCAAGACTTGCCCC
TCCGGAACATTCAGTACCGCACTCAACGCTAGCTCAGCCATCCAGTGTAT
GGATTGCCCGTTGGGTACCCGCAGCTCAGGTGGAAGCAGTTTCTGTTCAG
ATTGCCAACCCGCTGGGGCTCAATCAGCCTCTGTATGTCTTCCATGTCCA
TTGGGTACATCCAGTGGAAGTGGTGCTGGAACATGCAGCCAATGTGGAGC
TGGCACCTCTAGTGGTGCCAATCGTTGCAACAGGTGTAGGCCAGGATTCT
TTTCGGGTCAGCCTGGGTCCGCTTCCTGCCAAAGATGCCCAGCTGGAACA
TTCAGTACCACTTCAGCAGCAGAATCATCTTCCGAGTGCCTTGCCTGCCC
CGCTGGAACGTTCAGTAGAAACGGTGCCAGTGTTTGTACTGAATGTGGAG
CCGGTACTTTTGGGGATCGCGAAAGAGCAACTGCTTGCAGGAGTTGCCCC
GGTGGGACGTTTAGCAGAGCCGTGGGAGCCACGTCCAGAGATACGTGTGC
ACCGTGCCCAATTGGGACTTTCAGCTCTGATGGAGCGACCACTTGTACCG
GATGTAGCCCCGGTAGTTACTCCGACCAAGTTGGGTCATCATCGTGCACG
GGGTGCCCAGCTGGGACGTTTGGCACCGTTGCGGGAGCCACCTCAGCATC
TTCTTGTCTCCCTTGTCCCAAGGGCACCTTTAGTCAAGGATCTGTTCGGA
GCTGTCAGAGGTGTGGGCCAGGGACATTTGCTGAACAGGTCCGGTCAAGG
AGTTGCACATCTTGCCCAGCAGGAACTTTCAGTCTGGTGGAAGCTTCCGA
GACGAGTTCTAGCTGCCAGGACTGTCCTGCTGGGTCGTTTAGTGAATCAG
GCTCAATCAGATGCACTAGATGCCGCCAAGGCTTCTTCTCAGATCTGCCC
AGATCAGGAACTTGTAGCTCTTGCCCCGCAGGAACAGTCAGCACAGTCGT
TGGGGCGATATCCCCTGATGTTTGTGAGCCATGCCCTCCTGGAACCAGCA
ACTTTGGTGGTAGCGGACAGTGTTTCTAGGTGGTTGTGA
back to top

protein sequence of Ggra3806.t1

>Ggra3806.t1 ID=Ggra3806.t1|Name=Ggra3806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=413bp
MPIPKAQVFALGAHEERSARLSVLTRLMSVHLVQEGRLVISGSRYALAVA
PERLQINRDHFSARLAPPEHSVPHSTLAQPSSVWIARWVPAAQVEAVSVQ
IANPLGLNQPLYVFHVHWVHPVEVVLEHAANVELAPLVVPIVATGVGQDS
FRVSLGPLPAKDAQLEHSVPLQQQNHLPSALPAPLERSVETVPVFVLNVE
PVLLGIAKEQLLAGVAPVGRLAEPWEPRPEIRVHRAQLGLSALMERPLVP
DVAPVVTPTKLGHHRARGAQLGRLAPLREPPQHLLVSLVPRAPLVKDLFG
AVRGVGQGHLLNRSGQGVAHLAQQELSVWWKLPRRVLAARTVLLGRLVNQ
AQSDALDAAKASSQICPDQELVALAPQEQSAQSLGRYPLMFVSHALLEPA
TLVVADSVSRWL*
back to top

mRNA from alignment at tig00000850_pilon:2092439..2093863+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3806.t1 ID=Ggra3806.t1|Name=Ggra3806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000850_pilon:2092439..2093863+ (Gracilaria gracilis GNS1m male)
ATGCCGATACCGAAGGCTCAAGTTTTTGCACTTGGTGCCCACGAGGAACG
TTCAGCACGGTTATCGGTGCTGACTCGGCTGATGTCTGTACACCTTGTCC
AAGAGGGACGTTTAGTGATTTCGGGGAGTCGGTATGCACTCGCTGTGGCC
CCGGAACGTTTGCAGATCAACCGGGATCATTTTTCTGCAAGACTTGCCCC
TCCGGAACATTCAGTACCGCACTCAACGCTAGCTCAGCCATCCAGTGTAT
GGATTGCCCGTTGGGTACCCGCAGCTCAGGTGGAAGCAGTTTCTGTTCAG
ATTGCCAACCCGGTACCTTTGCAGATCGGCAGGGATCAGGGACCTGTACA
TCTTGCCCTGCCGGAACCTCCAGCAATGTAGCTGGGGCTCAATCAGCCTC
TGTATGTCTTCCATGTCCATTGGGTACATCCAGTGGAAGTGGTGCTGGAA
CATGCAGCCAATGTGGAGCTGGCACGTTTGCAGATCAGCAAGGTTCGATA
TCATGCAGACGTTGCAGAACTGGAACATTCAGCGAGGAAATTGGTGCTAC
ATCGGCAACTGCTTGTGTGAACTGTCCACCTGGTACTTTCAGCTCTAGTG
GTGCCAATCGTTGCAACAGGTGTAGGCCAGGATTCTTTTCGGGTCAGCCT
GGGTCCGCTTCCTGCCAAAGATGCCCAGCTGGAACATTCAGTACCACTTC
AGCAGCAGAATCATCTTCCGAGTGCCTTGCCTGCCCCGCTGGAACGTTCA
GTAGAAACGGTGCCAGTGTTTGTACTGAATGTGGAGCCGGTACTTTTGGG
GATCGCGAAAGAGCAACTGCTTGCAGGAGTTGCCCCGGTGGGACGTTTAG
CAGAGCCGTGGGAGCCACGTCCAGAGATACGTGTGCACCGTGCCCAATTG
GGACTTTCAGCTCTGATGGAGCGACCACTTGTACCGGATGTAGCCCCGGT
AGTTACTCCGACCAAGTTGGGTCATCATCGTGCACGGGGTGCCCAGCTGG
GACGTTTGGCACCGTTGCGGGAGCCACCTCAGCATCTTCTTGTCTCCCTT
GTCCCAAGGGCACCTTTAGTCAAGGATCTGTTCGGAGCTGTCAGAGGTGT
GGGCCAGGGACATTTGCTGAACAGGTCCGGTCAAGGAGTTGCACATCTTG
CCCAGCAGGAACTTTCAGTCTGGTGGAAGCTTCCGAGACGAGTTCTAGCT
GCCAGGACTGTCCTGCTGGGTCGTTTAGTGAATCAGGCTCAATCAGATGC
ACTAGATGCCGCCAAGGCTTCTTCTCAGATCTGCCCAGATCAGGAACTTG
TAGCTCTTGCCCCGCAGGAACAGTCAGCACAGTCGTTGGGGCGATATCCC
CTGATGTTTGTGAGCCATGCCCTCCTGGAACCAGCAACTTTGGTGGTAGC
GGACAGTGTTTCTAGGTGGTTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:2092439..2093863+

>Ggra3806.t1 ID=Ggra3806.t1|Name=Ggra3806.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1239bp|location=Sequence derived from alignment at tig00000850_pilon:2092439..2093863+ (Gracilaria gracilis GNS1m male)
ATGCCGATACCGAAGGCTCAAGTTTTTGCACTTGGTGCCCACGAGGAACG
TTCAGCACGGTTATCGGTGCTGACTCGGCTGATGTCTGTACACCTTGTCC
AAGAGGGACGTTTAGTGATTTCGGGGAGTCGGTATGCACTCGCTGTGGCC
CCGGAACGTTTGCAGATCAACCGGGATCATTTTTCTGCAAGACTTGCCCC
TCCGGAACATTCAGTACCGCACTCAACGCTAGCTCAGCCATCCAGTGTAT
GGATTGCCCGTTGGGTACCCGCAGCTCAGGTGGAAGCAGTTTCTGTTCAG
ATTGCCAACCCGCTGGGGCTCAATCAGCCTCTGTATGTCTTCCATGTCCA
TTGGGTACATCCAGTGGAAGTGGTGCTGGAACATGCAGCCAATGTGGAGC
TGGCACCTCTAGTGGTGCCAATCGTTGCAACAGGTGTAGGCCAGGATTCT
TTTCGGGTCAGCCTGGGTCCGCTTCCTGCCAAAGATGCCCAGCTGGAACA
TTCAGTACCACTTCAGCAGCAGAATCATCTTCCGAGTGCCTTGCCTGCCC
CGCTGGAACGTTCAGTAGAAACGGTGCCAGTGTTTGTACTGAATGTGGAG
CCGGTACTTTTGGGGATCGCGAAAGAGCAACTGCTTGCAGGAGTTGCCCC
GGTGGGACGTTTAGCAGAGCCGTGGGAGCCACGTCCAGAGATACGTGTGC
ACCGTGCCCAATTGGGACTTTCAGCTCTGATGGAGCGACCACTTGTACCG
GATGTAGCCCCGGTAGTTACTCCGACCAAGTTGGGTCATCATCGTGCACG
GGGTGCCCAGCTGGGACGTTTGGCACCGTTGCGGGAGCCACCTCAGCATC
TTCTTGTCTCCCTTGTCCCAAGGGCACCTTTAGTCAAGGATCTGTTCGGA
GCTGTCAGAGGTGTGGGCCAGGGACATTTGCTGAACAGGTCCGGTCAAGG
AGTTGCACATCTTGCCCAGCAGGAACTTTCAGTCTGGTGGAAGCTTCCGA
GACGAGTTCTAGCTGCCAGGACTGTCCTGCTGGGTCGTTTAGTGAATCAG
GCTCAATCAGATGCACTAGATGCCGCCAAGGCTTCTTCTCAGATCTGCCC
AGATCAGGAACTTGTAGCTCTTGCCCCGCAGGAACAGTCAGCACAGTCGT
TGGGGCGATATCCCCTGATGTTTGTGAGCCATGCCCTCCTGGAACCAGCA
ACTTTGGTGGTAGCGGACAGTGTTTCTAGGTGGTTGTGA
back to top