Ggra380.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra380.t1
Unique NameGgra380.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:220699..221991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708105.1
PFAMsSpoIIE
Max annot lvl2759|Eukaryota
KEGG koko:K17508
Evalue1.11e-64
EggNOG OGsCOG0631@1|root,KOG1379@2759|Eukaryota
EC3.1.3.16
Descriptionphosphoprotein phosphatase activity
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra380Ggra380Gracilaria gracilis GNS1m malegenetig00000950_pilon 220699..221991 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra380.t1.start1Ggra380.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 220699..220701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra380.t1.CDS1Ggra380.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 220699..221991 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra380.t1.exon1Ggra380.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 220699..221991 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra380.t1.stop1Ggra380.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 221989..221991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra380.t1Ggra380.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 220699..221991 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra380.t1 ID=Ggra380.t1|Name=Ggra380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=431bp
MLCTATSNTSPVVTSSSSATPADAPRRPNRASLNAGVGGVVAATAVASTL
ISSTSSCASSAADDGAMEFEASSSSPSSPSSASSSCSTSSDTVALSSCTV
STDDSLQHTRAATGVCAPPPLLFRSAVMSIPHPDKADKGGEDAFFVQSNA
LGVFDGVGGWASIGVDAGLYSKQLAQLTAEHLCKQGTCGVKEALKQAAAT
NQAIGSSTACVVGIHEHKLYGVNLGDSGLIVIRDGCVVYKTVEQQHYFNC
PYQIGTDSLDTVEVANSIEVPLRHGDWIIMGTDGLWDNVFADSIVDVVVQ
HERQRQEEQAAQQATPNAADGGAAQGGANKSDSTSSESSVVSDCSATHAA
NGGKSAQMIAEKLGQVAVKIANNERCSSPFAVNARNAGHLFVGGKVDDIT
IISALVVDAGVAAAAATTTTSAATTSANKE*
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spliced messenger RNA

>Ggra380.t1 ID=Ggra380.t1|Name=Ggra380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000950_pilon:220699..221991+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTGTACCGCCACTTCCAACAcgtcgcccgtcgtcacgtcgtcgtc
gtcCGCCACGCCCGCCGACGCGCCGCGCCGACCCAACAGAGCGTCGCTCA
ACGCGGGCGTAGGCGGAGTAGTTGCAGCCACCGCCGTGGCCTCCACGCTA
ATTTCTTCAACCTCCTCGTGCGCCTCCTCCGCCGCCGACGATGGCGCCAT
GGAGTTTGAGGcgtcgtcgtcgtcaccgtcttcaccatcatcagcatcgt
cgtcgtGCAGCACCAGCAGCGACACGGTTGCATTATCATCGTGCACGGTG
AGCACGGACGATTCACTACAACACACGCGCGCCGCCACCGGCGTGTGCGC
GCCGCCGCCGCTGCTGTTTCGCAGCGCGGTGATGAGCATTCCGCACCCGG
ACAAGGCGGACAAGGGCGGCGAGGATGCGTTCTTCGTGCAGTCCAACGCG
CTGGGCGTGTTTGACGGCGTGGGCGGCTGGGCCAGCATCGGCGTGGACGC
CGGCCTTTACTCCAAACAGCTGGCGCAGCTGACGGCGGAGCACCTCTGCA
AGCAGGGCACGTGCGGCGTGAAGGAGGCGCTGAAACAGGCGGCGGCCACC
AACCAGGCGATTGGGTCCAGCACGGCGTGTGTGGTGGGCATTCATGAACA
CAAGCTGTACGGCGTGAACTTGGGCGACTCGGGGCTGATTGTGATTCGCG
ACGGCTGTGTGGTGTACAAGACGGTGGAACAACAGCATTATTTCAACTGC
CCGTATCAGATTGGCACCGACTCGCTGGATACGGTGGAGGTTGCCAACTC
GATTGAAGTGCCGCTGCGGCACGGTGACTGGATCATCATGGGGACGGACG
GGCTGTGGGACAATGTGTTTGCGGACAGCATCGTGGACGTGGTGGTGCAA
CACGAGCGACAACGACAGGAGGAACAAGCGGCGCAACAAGCAACGCCAAA
CGCAGCGGACGGCGGCGCAGCGCAAGGCGGCGCGAACAAGAGCGACAGCA
CGTCGAGCGAAAGCAGCGTGGTGAGCGACTGCAGCGCCACGCACGCAGCC
AATGGCGGCAAGAGCGCGCAGATGATCGCCGAAAAGCTCGGCCAAGTGGC
GGTGAAGATTGCTAATAACGAACGTTGCTCGTCGCCGTTTGCGGTGAATG
CTAGAAACGCTGGCCACCTGTTTGTGGGCGGCAAGGTGGATGATATCACC
ATCATCTCCGCGCTGGTGGTGGAcgccggcgtggccgccgcagccgccac
caccaccaccagcgccgccaccACAAGCGCGAACAAGGAATGA
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protein sequence of Ggra380.t1

>Ggra380.t1 ID=Ggra380.t1|Name=Ggra380.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=431bp
MLCTATSNTSPVVTSSSSATPADAPRRPNRASLNAGVGGVVAATAVASTL
ISSTSSCASSAADDGAMEFEASSSSPSSPSSASSSCSTSSDTVALSSCTV
STDDSLQHTRAATGVCAPPPLLFRSAVMSIPHPDKADKGGEDAFFVQSNA
LGVFDGVGGWASIGVDAGLYSKQLAQLTAEHLCKQGTCGVKEALKQAAAT
NQAIGSSTACVVGIHEHKLYGVNLGDSGLIVIRDGCVVYKTVEQQHYFNC
PYQIGTDSLDTVEVANSIEVPLRHGDWIIMGTDGLWDNVFADSIVDVVVQ
HERQRQEEQAAQQATPNAADGGAAQGGANKSDSTSSESSVVSDCSATHAA
NGGKSAQMIAEKLGQVAVKIANNERCSSPFAVNARNAGHLFVGGKVDDIT
IISALVVDAGVAAAAATTTTSAATTSANKE*
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mRNA from alignment at tig00000950_pilon:220699..221991+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra380.t1 ID=Ggra380.t1|Name=Ggra380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000950_pilon:220699..221991+ (Gracilaria gracilis GNS1m male)
ATGCTTTGTACCGCCACTTCCAACAcgtcgcccgtcgtcacgtcgtcgtc
gtcCGCCACGCCCGCCGACGCGCCGCGCCGACCCAACAGAGCGTCGCTCA
ACGCGGGCGTAGGCGGAGTAGTTGCAGCCACCGCCGTGGCCTCCACGCTA
ATTTCTTCAACCTCCTCGTGCGCCTCCTCCGCCGCCGACGATGGCGCCAT
GGAGTTTGAGGcgtcgtcgtcgtcaccgtcttcaccatcatcagcatcgt
cgtcgtGCAGCACCAGCAGCGACACGGTTGCATTATCATCGTGCACGGTG
AGCACGGACGATTCACTACAACACACGCGCGCCGCCACCGGCGTGTGCGC
GCCGCCGCCGCTGCTGTTTCGCAGCGCGGTGATGAGCATTCCGCACCCGG
ACAAGGCGGACAAGGGCGGCGAGGATGCGTTCTTCGTGCAGTCCAACGCG
CTGGGCGTGTTTGACGGCGTGGGCGGCTGGGCCAGCATCGGCGTGGACGC
CGGCCTTTACTCCAAACAGCTGGCGCAGCTGACGGCGGAGCACCTCTGCA
AGCAGGGCACGTGCGGCGTGAAGGAGGCGCTGAAACAGGCGGCGGCCACC
AACCAGGCGATTGGGTCCAGCACGGCGTGTGTGGTGGGCATTCATGAACA
CAAGCTGTACGGCGTGAACTTGGGCGACTCGGGGCTGATTGTGATTCGCG
ACGGCTGTGTGGTGTACAAGACGGTGGAACAACAGCATTATTTCAACTGC
CCGTATCAGATTGGCACCGACTCGCTGGATACGGTGGAGGTTGCCAACTC
GATTGAAGTGCCGCTGCGGCACGGTGACTGGATCATCATGGGGACGGACG
GGCTGTGGGACAATGTGTTTGCGGACAGCATCGTGGACGTGGTGGTGCAA
CACGAGCGACAACGACAGGAGGAACAAGCGGCGCAACAAGCAACGCCAAA
CGCAGCGGACGGCGGCGCAGCGCAAGGCGGCGCGAACAAGAGCGACAGCA
CGTCGAGCGAAAGCAGCGTGGTGAGCGACTGCAGCGCCACGCACGCAGCC
AATGGCGGCAAGAGCGCGCAGATGATCGCCGAAAAGCTCGGCCAAGTGGC
GGTGAAGATTGCTAATAACGAACGTTGCTCGTCGCCGTTTGCGGTGAATG
CTAGAAACGCTGGCCACCTGTTTGTGGGCGGCAAGGTGGATGATATCACC
ATCATCTCCGCGCTGGTGGTGGAcgccggcgtggccgccgcagccgccac
caccaccaccagcgccgccaccACAAGCGCGAACAAGGAATGA
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Coding sequence (CDS) from alignment at tig00000950_pilon:220699..221991+

>Ggra380.t1 ID=Ggra380.t1|Name=Ggra380.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00000950_pilon:220699..221991+ (Gracilaria gracilis GNS1m male)
ATGCTTTGTACCGCCACTTCCAACAcgtcgcccgtcgtcacgtcgtcgtc
gtcCGCCACGCCCGCCGACGCGCCGCGCCGACCCAACAGAGCGTCGCTCA
ACGCGGGCGTAGGCGGAGTAGTTGCAGCCACCGCCGTGGCCTCCACGCTA
ATTTCTTCAACCTCCTCGTGCGCCTCCTCCGCCGCCGACGATGGCGCCAT
GGAGTTTGAGGcgtcgtcgtcgtcaccgtcttcaccatcatcagcatcgt
cgtcgtGCAGCACCAGCAGCGACACGGTTGCATTATCATCGTGCACGGTG
AGCACGGACGATTCACTACAACACACGCGCGCCGCCACCGGCGTGTGCGC
GCCGCCGCCGCTGCTGTTTCGCAGCGCGGTGATGAGCATTCCGCACCCGG
ACAAGGCGGACAAGGGCGGCGAGGATGCGTTCTTCGTGCAGTCCAACGCG
CTGGGCGTGTTTGACGGCGTGGGCGGCTGGGCCAGCATCGGCGTGGACGC
CGGCCTTTACTCCAAACAGCTGGCGCAGCTGACGGCGGAGCACCTCTGCA
AGCAGGGCACGTGCGGCGTGAAGGAGGCGCTGAAACAGGCGGCGGCCACC
AACCAGGCGATTGGGTCCAGCACGGCGTGTGTGGTGGGCATTCATGAACA
CAAGCTGTACGGCGTGAACTTGGGCGACTCGGGGCTGATTGTGATTCGCG
ACGGCTGTGTGGTGTACAAGACGGTGGAACAACAGCATTATTTCAACTGC
CCGTATCAGATTGGCACCGACTCGCTGGATACGGTGGAGGTTGCCAACTC
GATTGAAGTGCCGCTGCGGCACGGTGACTGGATCATCATGGGGACGGACG
GGCTGTGGGACAATGTGTTTGCGGACAGCATCGTGGACGTGGTGGTGCAA
CACGAGCGACAACGACAGGAGGAACAAGCGGCGCAACAAGCAACGCCAAA
CGCAGCGGACGGCGGCGCAGCGCAAGGCGGCGCGAACAAGAGCGACAGCA
CGTCGAGCGAAAGCAGCGTGGTGAGCGACTGCAGCGCCACGCACGCAGCC
AATGGCGGCAAGAGCGCGCAGATGATCGCCGAAAAGCTCGGCCAAGTGGC
GGTGAAGATTGCTAATAACGAACGTTGCTCGTCGCCGTTTGCGGTGAATG
CTAGAAACGCTGGCCACCTGTTTGTGGGCGGCAAGGTGGATGATATCACC
ATCATCTCCGCGCTGGTGGTGGAcgccggcgtggccgccgcagccgccac
caccaccaccagcgccgccaccACAAGCGCGAACAAGGAATGA
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