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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 6669.EFX71861 |
| Preferred name | GRIA2 |
| PFAMs | ANF_receptor,Lig_chan,Lig_chan-Glu_bd |
| Max annot lvl | 33208|Metazoa |
| KEGG ko | ko:K05197,ko:K05198,ko:K05199,ko:K05200,ko:K05313 |
| KEGG TC | 1.A.10.1.1,1.A.10.1.13,1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17,1.A.10.1.2,1.A.10.1.4 |
| KEGG Pathway | ko04024,ko04080,ko04713,ko04720,ko04723,ko04724,ko04728,ko04730,ko05014,ko05030,ko05031,ko05033,ko05202,map04024,map04080,map04713,map04720,map04723,map04724,map04728,map04730,map05014,map05030,map05031,map05033,map05202 |
| GOs | GO:0000149,GO:0001101,GO:0001508,GO:0001540,GO:0001664,GO:0001919,GO:0001965,GO:0003008,GO:0003674,GO:0004888,GO:0004970,GO:0004971,GO:0005102,GO:0005215,GO:0005216,GO:0005230,GO:0005231,GO:0005234,GO:0005261,GO:0005267,GO:0005272,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005793,GO:0005798,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006873,GO:0006874,GO:0006875,GO:0006888,GO:0006897,GO:0006898,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007215,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007417,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008021,GO:0008022,GO:0008066,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008179,GO:0008324,GO:0008328,GO:0009410,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010646,GO:0010647,GO:0010648,GO:0012505,GO:0012506,GO:0012507,GO:0014069,GO:0014070,GO:0014075,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015267,GO:0015276,GO:0015277,GO:0015318,GO:0015672,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0017022,GO:0019222,GO:0019226,GO:0019228,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0021510,GO:0022607,GO:0022803,GO:0022824,GO:0022834,GO:0022835,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030001,GO:0030003,GO:0030133,GO:0030134,GO:0030135,GO:0030139,GO:0030165,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030594,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030666,GO:0030672,GO:0031090,GO:0031224,GO:0031226,GO:0031252,GO:0031253,GO:0031256,GO:0031267,GO:0031323,GO:0031410,GO:0031489,GO:0031594,GO:0031623,GO:0031681,GO:0031690,GO:0031698,GO:0031982,GO:0031984,GO:0032279,GO:0032281,GO:0032355,GO:0032501,GO:0032502,GO:0032589,GO:0032590,GO:0032591,GO:0032838,GO:0032839,GO:0032870,GO:0032983,GO:0032991,GO:0033036,GO:0033116,GO:0033218,GO:0033267,GO:0033993,GO:0034220,GO:0034702,GO:0034703,GO:0034705,GO:0034706,GO:0035235,GO:0035249,GO:0035637,GO:0035725,GO:0036477,GO:0038023,GO:0042175,GO:0042220,GO:0042221,GO:0042277,GO:0042391,GO:0042493,GO:0042592,GO:0042734,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043025,GO:0043083,GO:0043112,GO:0043170,GO:0043195,GO:0043197,GO:0043198,GO:0043200,GO:0043204,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043235,GO:0043279,GO:0043331,GO:0043434,GO:0043679,GO:0043933,GO:0044085,GO:0044237,GO:0044260,GO:0044297,GO:0044306,GO:0044308,GO:0044309,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0045211,GO:0045838,GO:0046677,GO:0046685,GO:0046873,GO:0046907,GO:0046983,GO:0048167,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050803,GO:0050804,GO:0050805,GO:0050806,GO:0050877,GO:0050890,GO:0050896,GO:0051018,GO:0051020,GO:0051117,GO:0051179,GO:0051234,GO:0051259,GO:0051262,GO:0051480,GO:0051602,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051966,GO:0051968,GO:0055037,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060076,GO:0060078,GO:0060079,GO:0060089,GO:0060255,GO:0060292,GO:0060359,GO:0060992,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0070382,GO:0070848,GO:0070887,GO:0071229,GO:0071230,GO:0071310,GO:0071359,GO:0071363,GO:0071375,GO:0071407,GO:0071417,GO:0071418,GO:0071495,GO:0071704,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0072347,GO:0072503,GO:0072507,GO:0090114,GO:0097060,GO:0097110,GO:0097447,GO:0097458,GO:0097708,GO:0098552,GO:0098588,GO:0098590,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098793,GO:0098794,GO:0098796,GO:0098797,GO:0098802,GO:0098805,GO:0098827,GO:0098839,GO:0098843,GO:0098878,GO:0098916,GO:0098936,GO:0098948,GO:0098960,GO:0098984,GO:0099055,GO:0099060,GO:0099061,GO:0099094,GO:0099146,GO:0099177,GO:0099240,GO:0099501,GO:0099503,GO:0099529,GO:0099536,GO:0099537,GO:0099565,GO:0099566,GO:0099568,GO:0099572,GO:0099583,GO:0099634,GO:0099699,GO:0120025,GO:0120038,GO:0120111,GO:0150034,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902495,GO:1904315,GO:1905114,GO:1990351 |
| Evalue | 2.28e-10 |
| EggNOG OGs | KOG1052@1|root,KOG1054@2759|Eukaryota,39MCC@33154|Opisthokonta,3CNZE@33208|Metazoa,3DEZ0@33213|Bilateria,41TZ2@6656|Arthropoda |
| Description | ionotropic glutamate receptor activity |
| COG category | P |
| BRITE | ko00000,ko00001,ko04040 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3797.t1.start1 | Ggra3797.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000850_pilon 1971327..1971329 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3797.t1.stop1 | Ggra3797.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000850_pilon 1973245..1973247 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra3797.t1 ID=Ggra3797.t1|Name=Ggra3797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=490bp MLPQRSTIMRLFIQTLVIHLLLSFHAADTIRGALDHTMLRCCVVQEPPIA LIDETEYSNGGIGGLVAEYLREMQGLLGWKCSSVRAYSNGSTTSFNSFVH MMDRCSENGLIKNDSQCVCDIGASGWFPTYDRYPRVDFLPPFVIEGYRII FHNSISDTEEDDLFFLTAFDLRSWLCIIALIVLFSICKLLDSRFVPRLRG VSFRRTDSRFLRFMRSLRRTGTCYRFLRALLSVFGAIITQTETEDEQRRH GIYRSILHLMLGTIGLILILSYEASMTASLVQERIVSKFQSAEDFRSCQI APEDVCLPGGGAMELFWNRSIAGGSICHENRKPWIGSYREMYKRLDNGSC KYAMLLDSTANTFVNEKYCGQYLLSDKSIFRDGLAMVLPKGSNLTEIMSL ATLKLRGEALLPTMDRFFQGQRVCAAAGSTSLPFRKLRLFFLLAFAACAL YIIFMVFLRRVRYRNTLENGESAAGAEQASDLPAPSTNV* back to topspliced messenger RNA >Ggra3797.t1 ID=Ggra3797.t1|Name=Ggra3797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000850_pilon:1971327..1973247+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCTTCCCCAGCGCTCGACTATTATGAGATTGTTCATTCAAACACTGGT TATTCATCTTCTACTGTCCTTCCATGCAGCGGATACAATCCGTGGAGCTC TCGACCACACAATGCTTCGTTGCTGCGTGGTCCAAGAACCGCCCATAGCA CTCATCGACGAAACGGAATACTCCAATGGAGGCATCGGTGGTTTAGTTGC AGAATATCTTCGTGAGATGCAAGGGCTTCTTGGGTGGAAATGTTCCTCAG TTCGGGCATACTCTAATGGGAGTACAACAAGCTTCAATAGTTTTGTACAC ATGATGGACAGATGTTCGGAGAATGGCTTAATCAAAAACGATTCGCAGTG TGTTTGTGACATCGGAGCCAGTGGTTGGTTCCCCACATATGATCGCTATC CACGAGTCGATTTTCTTCCGCCCTTCGTAATTGAAGGCTATCGAATAATC TTTCATAACTCAATATCTGATACTGAGGAAGACGATCTGTTCTTCCTTAC CGCATTTGACTTGAGATCATGGTTGTGCATTATCGCGTTGATCGTGTTGT TCTCTATATGCAAATTGCTTGACTCTCGCTTTGTACCACGTTTGCGTGGT GTCTCGTTTCGAAGAACAGACTCTCGTTTCCTTCGATTCATGCGTTCTCT CAGGAGGACAGGAACCTGTTACAGGTTTCTCCGGGCTTTGTTGAGCGTCT TCGGTGCAATAATAACACAAACCGAGACTGAAGATGAGCAGAGAAGACAT GGGATATATCGATCAATTCTTCATTTGATGCTTGGCACTATAGGACTCAT TCTGATTTTGTCCTATGAAGCGAGCATGACTGCTTCCCTCGTACAGGAGA GAATTGTGTCAAAGTTCCAATCTGCGGAGGACTTTAGGAGTTGTCAAATC GCACCAGAAGATGTATGTCTGCCTGGCGGGGGGGCAATGGAGTTGTTCTG GAACCGTTCAATAGCTGGTGGAAGTATTTGTCATGAAAATAGGAAACCTT GGATAGGATCTTATCGCGAGATGTACAAACGTTTAGATAATGGGAGTTGC AAGTATGCAATGCTTCTGGATTCTACAGCCAACACGTTCGTCAACGAGAA GTACTGCGGTCAATATTTGCTGAGCGACAAGAGCATTTTCAGAGATGGGC TGGCAATGGTGCTTCCAAAAGGATCGAACTTGACGGAGATTATGTCTCTC GCTACGTTGAAACTAAGAGGTGAGGCACTGCTTCCAACTATGGATCGGTT CTTTCAGGGCCAGCGGGTATGCGCTGCGGCGGGCTCTACGTCACTACCGT TTAGGAAACTGCGTCTTTTCTTTCTTCTGGCTTTCGCGGCATGTGCTCTG TACATCATATTCATGGTGTTCCTCAGAAGGGTGAGGTACCGGAACACTTT GGAGAATGGGGAAAGTGCTGCGGGAGCTGAACAAGCTTCCGACTTGCCAG CCCCTTCGACGAACGTGTAG back to topprotein sequence of Ggra3797.t1 >Ggra3797.t1 ID=Ggra3797.t1|Name=Ggra3797.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=490bp
MLPQRSTIMRLFIQTLVIHLLLSFHAADTIRGALDHTMLRCCVVQEPPIA LIDETEYSNGGIGGLVAEYLREMQGLLGWKCSSVRAYSNGSTTSFNSFVH MMDRCSENGLIKNDSQCVCDIGASGWFPTYDRYPRVDFLPPFVIEGYRII FHNSISDTEEDDLFFLTAFDLRSWLCIIALIVLFSICKLLDSRFVPRLRG VSFRRTDSRFLRFMRSLRRTGTCYRFLRALLSVFGAIITQTETEDEQRRH GIYRSILHLMLGTIGLILILSYEASMTASLVQERIVSKFQSAEDFRSCQI APEDVCLPGGGAMELFWNRSIAGGSICHENRKPWIGSYREMYKRLDNGSC KYAMLLDSTANTFVNEKYCGQYLLSDKSIFRDGLAMVLPKGSNLTEIMSL ATLKLRGEALLPTMDRFFQGQRVCAAAGSTSLPFRKLRLFFLLAFAACAL YIIFMVFLRRVRYRNTLENGESAAGAEQASDLPAPSTNV* back to topmRNA from alignment at tig00000850_pilon:1971327..1973247+ Legend: start_codonpolypeptideCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra3797.t1 ID=Ggra3797.t1|Name=Ggra3797.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1921bp|location=Sequence derived from alignment at tig00000850_pilon:1971327..1973247+ (Gracilaria gracilis GNS1m male) ATGCTTCCCCGTAAGTTGAATGAGACATGATTGCTATATAACTGGCTTCG
CATGACCCGAGAATCTCTCTGACAACGATTTCTGTATCGCATGAATCACA
CACAGAGCGCTCGACTATTATGAGATTGTTCATTCAAACACTGGTTATTC
ATCTTCTACTGTCCTTCCATGCAGCGGATACAATCCGTGGAGCTCTCGAC
CACACAATGCTTCGTTGCTGCGTGGTCCAAGAACCGCCCATAGCACTCAT
CGACGAAACGGAATACTCCAATGTACGCGATGATAACTCATCAAGTCTTA
TAAATGAGAGTAAGAAAGTAATCTCACAGTTTTGTTGTCTGTGCCACACT
TTTCCCACATGTATGTCAAGTAGGGAGGCATCGGTGGTTTAGTTGCAGAA
TATCTTCGTGAGATGCAAGGGCTTCTTGGGTGGAAATGTTCCTCAGTTCG
GGCATACTCTAATGGGAGTACAACAAGCTTCAATAGTTTTGTACACATGA
TGGACAGATGTTCGGAGAATGGCTTAATCAAAAACGATTCGCAGTGTGTT
TGTGACATCGGAGCCAGTGGTTGGTTCCCCACATATGATCGCTATCCACG
AGTCGATTTTCTTCCGCCCTTCGTAATTGAAGGCTATCGAATAATCTTTC
ATAACTCAATATCTGATACTGAGGAAGACGATCTGTTCTTCCTTACCGCA
TTTGACTTGAGATCATGGTTGTGCATTATCGCGTTGATCGTGTTGTTCTC
TATATGCAAATTGCTTGACTCTCGCTTTGTACCACGTTTGCGTGGTGTCT
CGTTTCGAAGAACAGACTCTCGTTTCCTTCGATTCATGCGTTCTCTCAGG
AGGACAGGAACCTGTTACAGGTTTCTCCGGGCTTTGTTGAGCGTCTGTAA
GTTTTGAAGATTCTATATCTCGAGGAGAGGGTGTGAACGTATCTCGAAGG
CATCTTACAAACATTCTCGTTTTCTTCATTCCTTTTTATCAGTCGGTGCA
ATAATAACACAAACCGAGACTGAAGATGAGCAGAGAAGACATGGGATATA
TCGATCAATTCTTCATTTGATGCTTGGCACTATAGGACTCATTCTGATTT
TGTCCTATGAAGCGAGCATGACGTAAGTGATTGAAATCTTGATCATGTAG
GAAAGCATTGCATCCATCGTTCTGACTAAGCTAACTGGATGAACCACTTC
ATAGTGCTTCCCTCGTACAGGAGAGAATTGTGTCAAAGTTCCAATCTGCG
GAGGACTTTAGGAGTTGTCAAATCGCACCAGAAGATGTATGTCTGCCTGG
CGGGGGGGCAATGGAGTTGTTCTGGAACCGTTCAATAGCTGGTGGAAGGT
ATGGGTCTCATTCCTTTGTTGACTAAGCGCAAACACGCTTTATCAGATTC
TAACGAACTTGTGTGCCGTCGGAAGTATTTGTCATGAAAATAGGAAACCT
TGGATAGGATCTTATCGCGAGATGTACAAACGTTTAGATAATGGGAGTTG
CAAGTATGCAATGCTTCTGGATTCTACAGCCAACACGTTCGTCAACGAGA
AGTACTGCGGTCAATATTTGCTGAGCGACAAGAGCATTTTCAGAGATGGG
CTGGCAATGGTGCTTCCAAAAGGATCGAACTTGACGGAGATTATGTCTCT
CGCTACGTTGAAACTAAGAGGTGAGGCACTGCTTCCAACTATGGATCGGT
TCTTTCAGGGCCAGCGGGTATGCGCTGCGGCGGGCTCTACGTCACTACCG
TTTAGGAAACTGCGTCTTTTCTTTCTTCTGGCTTTCGCGGCATGTGCTCT
GTACATCATATTCATGGTGTTCCTCAGAAGGGTGAGGTACCGGAACACTT
TGGAGAATGGGGAAAGTGCTGCGGGAGCTGAACAAGCTTCCGACTTGCCA
GCCCCTTCGACGAACGTGTAG back to topCoding sequence (CDS) from alignment at tig00000850_pilon:1971327..1973247+ >Ggra3797.t1 ID=Ggra3797.t1|Name=Ggra3797.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00000850_pilon:1971327..1973247+ (Gracilaria gracilis GNS1m male) ATGCTTCCCCAGCGCTCGACTATTATGAGATTGTTCATTCAAACACTGGT TATTCATCTTCTACTGTCCTTCCATGCAGCGGATACAATCCGTGGAGCTC TCGACCACACAATGCTTCGTTGCTGCGTGGTCCAAGAACCGCCCATAGCA CTCATCGACGAAACGGAATACTCCAATGGAGGCATCGGTGGTTTAGTTGC AGAATATCTTCGTGAGATGCAAGGGCTTCTTGGGTGGAAATGTTCCTCAG TTCGGGCATACTCTAATGGGAGTACAACAAGCTTCAATAGTTTTGTACAC ATGATGGACAGATGTTCGGAGAATGGCTTAATCAAAAACGATTCGCAGTG TGTTTGTGACATCGGAGCCAGTGGTTGGTTCCCCACATATGATCGCTATC CACGAGTCGATTTTCTTCCGCCCTTCGTAATTGAAGGCTATCGAATAATC TTTCATAACTCAATATCTGATACTGAGGAAGACGATCTGTTCTTCCTTAC CGCATTTGACTTGAGATCATGGTTGTGCATTATCGCGTTGATCGTGTTGT TCTCTATATGCAAATTGCTTGACTCTCGCTTTGTACCACGTTTGCGTGGT GTCTCGTTTCGAAGAACAGACTCTCGTTTCCTTCGATTCATGCGTTCTCT CAGGAGGACAGGAACCTGTTACAGGTTTCTCCGGGCTTTGTTGAGCGTCT TCGGTGCAATAATAACACAAACCGAGACTGAAGATGAGCAGAGAAGACAT GGGATATATCGATCAATTCTTCATTTGATGCTTGGCACTATAGGACTCAT TCTGATTTTGTCCTATGAAGCGAGCATGACTGCTTCCCTCGTACAGGAGA GAATTGTGTCAAAGTTCCAATCTGCGGAGGACTTTAGGAGTTGTCAAATC GCACCAGAAGATGTATGTCTGCCTGGCGGGGGGGCAATGGAGTTGTTCTG GAACCGTTCAATAGCTGGTGGAAGTATTTGTCATGAAAATAGGAAACCTT GGATAGGATCTTATCGCGAGATGTACAAACGTTTAGATAATGGGAGTTGC AAGTATGCAATGCTTCTGGATTCTACAGCCAACACGTTCGTCAACGAGAA GTACTGCGGTCAATATTTGCTGAGCGACAAGAGCATTTTCAGAGATGGGC TGGCAATGGTGCTTCCAAAAGGATCGAACTTGACGGAGATTATGTCTCTC GCTACGTTGAAACTAAGAGGTGAGGCACTGCTTCCAACTATGGATCGGTT CTTTCAGGGCCAGCGGGTATGCGCTGCGGCGGGCTCTACGTCACTACCGT TTAGGAAACTGCGTCTTTTCTTTCTTCTGGCTTTCGCGGCATGTGCTCTG TACATCATATTCATGGTGTTCCTCAGAAGGGTGAGGTACCGGAACACTTT GGAGAATGGGGAAAGTGCTGCGGGAGCTGAACAAGCTTCCGACTTGCCAG CCCCTTCGACGAACGTGTAG back to top
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