Ggra3796.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3796.t1
Unique NameGgra3796.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1884906..1885286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9778.XP_004369194.1
Preferred nameCRYZ
PFAMsADH_N,ADH_zinc_N
Max annot lvl33208|Metazoa
KEGG koko:K00344
GOsGO:0000166,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003824,GO:0003960,GO:0005198,GO:0005212,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006805,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0009056,GO:0009410,GO:0009987,GO:0016043,GO:0016491,GO:0016651,GO:0016655,GO:0022607,GO:0032501,GO:0036094,GO:0042178,GO:0042221,GO:0043167,GO:0043168,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050661,GO:0050662,GO:0050877,GO:0050896,GO:0050953,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0055114,GO:0065003,GO:0070402,GO:0070887,GO:0071466,GO:0071840,GO:0097159,GO:1901265,GO:1901363
Evalue1.62e-15
EggNOG OGsCOG0604@1|root,KOG1198@2759|Eukaryota,39JG1@33154|Opisthokonta,3BDWX@33208|Metazoa,3CW7R@33213|Bilateria,485F7@7711|Chordata,48ZFQ@7742|Vertebrata,3JCMM@40674|Mammalia,34WY0@311790|Afrotheria
EC1.6.5.5
DescriptionZinc-binding dehydrogenase
COG categoryC
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3796Ggra3796Gracilaria gracilis GNS1m malegenetig00000850_pilon 1884906..1885286 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3796.t1.start1Ggra3796.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1884906..1884908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3796.t1.CDS1Ggra3796.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1884906..1885286 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3796.t1.exon1Ggra3796.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1884906..1885286 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3796.t1.stop1Ggra3796.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1885284..1885286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3796.t1Ggra3796.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1884906..1885286 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3796.t1 ID=Ggra3796.t1|Name=Ggra3796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=127bp
MKAAQVTAFGSPAEVLSVSEDVKPPSHPPKNHVLIRVHAVSLSPSDYRML
TGAGDLIKKPPKNQWPYIPGGDLAGIVEEVGEQVSGFQKGDEVVATWDVY
GIGALAELAVVHVKFVYRKPKNLSFV*
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spliced messenger RNA

>Ggra3796.t1 ID=Ggra3796.t1|Name=Ggra3796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp|location=Sequence derived from alignment at tig00000850_pilon:1884906..1885286+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCAGCTCAAGTCACCGCTTTCGGCAGCCCCGCTGAAGTACTCTC
CGTCTCTGAAGACGTCAAACCTCCATCGCATCCCCCAAAAAATCACGTTC
TGATCCGTGTGCACGCTGTCTCCCTAAGCCCCAGCGACTATCGCATGCTC
ACAGGAGCTGGTGATCTCATAAAAAAGCCACCCAAGAACCAATGGCCGTA
CATCCCTGGCGGAGATCTGGCTGGAATCGTTGAAGAAGTTGGGGAGCAAG
TCTCTGGTTTCCAGAAGGGGGATGAAGTCGTTGCTACGTGGGACGTTTAT
GGTATCGGTGCTTTGGCAGAGCTGGCTGTCGTCCACGTCAAGTTTGTCTA
TCGAAAGCCGAAGAACCTCTCGTTCGTTTGA
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protein sequence of Ggra3796.t1

>Ggra3796.t1 ID=Ggra3796.t1|Name=Ggra3796.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=127bp
MKAAQVTAFGSPAEVLSVSEDVKPPSHPPKNHVLIRVHAVSLSPSDYRML
TGAGDLIKKPPKNQWPYIPGGDLAGIVEEVGEQVSGFQKGDEVVATWDVY
GIGALAELAVVHVKFVYRKPKNLSFV*
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mRNA from alignment at tig00000850_pilon:1884906..1885286+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3796.t1 ID=Ggra3796.t1|Name=Ggra3796.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp|location=Sequence derived from alignment at tig00000850_pilon:1884906..1885286+ (Gracilaria gracilis GNS1m male)
ATGAAGGCAGCTCAAGTCACCGCTTTCGGCAGCCCCGCTGAAGTACTCTC
CGTCTCTGAAGACGTCAAACCTCCATCGCATCCCCCAAAAAATCACGTTC
TGATCCGTGTGCACGCTGTCTCCCTAAGCCCCAGCGACTATCGCATGCTC
ACAGGAGCTGGTGATCTCATAAAAAAGCCACCCAAGAACCAATGGCCGTA
CATCCCTGGCGGAGATCTGGCTGGAATCGTTGAAGAAGTTGGGGAGCAAG
TCTCTGGTTTCCAGAAGGGGGATGAAGTCGTTGCTACGTGGGACGTTTAT
GGTATCGGTGCTTTGGCAGAGCTGGCTGTCGTCCACGTCAAGTTTGTCTA
TCGAAAGCCGAAGAACCTCTCGTTCGTTTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1884906..1885286+

>Ggra3796.t1 ID=Ggra3796.t1|Name=Ggra3796.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=381bp|location=Sequence derived from alignment at tig00000850_pilon:1884906..1885286+ (Gracilaria gracilis GNS1m male)
ATGAAGGCAGCTCAAGTCACCGCTTTCGGCAGCCCCGCTGAAGTACTCTC
CGTCTCTGAAGACGTCAAACCTCCATCGCATCCCCCAAAAAATCACGTTC
TGATCCGTGTGCACGCTGTCTCCCTAAGCCCCAGCGACTATCGCATGCTC
ACAGGAGCTGGTGATCTCATAAAAAAGCCACCCAAGAACCAATGGCCGTA
CATCCCTGGCGGAGATCTGGCTGGAATCGTTGAAGAAGTTGGGGAGCAAG
TCTCTGGTTTCCAGAAGGGGGATGAAGTCGTTGCTACGTGGGACGTTTAT
GGTATCGGTGCTTTGGCAGAGCTGGCTGTCGTCCACGTCAAGTTTGTCTA
TCGAAAGCCGAAGAACCTCTCGTTCGTTTGA
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