Ggra3793.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3793.t1
Unique NameGgra3793.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1857687..1860325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3793Ggra3793Gracilaria gracilis GNS1m malegenetig00000850_pilon 1857687..1860325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3793.t1Ggra3793.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1857687..1860325 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3793.t1.stop1Ggra3793.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1857687..1857689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3793.t1.CDS1Ggra3793.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1857687..1858041 -
Ggra3793.t1.CDS2Ggra3793.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1858134..1858270 -
Ggra3793.t1.CDS3Ggra3793.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1859907..1859934 -
Ggra3793.t1.CDS4Ggra3793.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1860035..1860055 -
Ggra3793.t1.CDS5Ggra3793.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1860261..1860325 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3793.t1.exon1Ggra3793.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1857687..1858041 -
Ggra3793.t1.exon2Ggra3793.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1858134..1858270 -
Ggra3793.t1.exon3Ggra3793.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1859907..1859934 -
Ggra3793.t1.exon4Ggra3793.t1.exon4Gracilaria gracilis GNS1m maleexontig00000850_pilon 1860035..1860055 -
Ggra3793.t1.exon5Ggra3793.t1.exon5Gracilaria gracilis GNS1m maleexontig00000850_pilon 1860261..1860325 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3793.t1.intron1Ggra3793.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1858042..1858133 -
Ggra3793.t1.intron2Ggra3793.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1858271..1859906 -
Ggra3793.t1.intron3Ggra3793.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1859935..1860034 -
Ggra3793.t1.intron4Ggra3793.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1860056..1860260 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3793.t1.start1Ggra3793.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1860323..1860325 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3793.t1 ID=Ggra3793.t1|Name=Ggra3793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=202bp
MLRVQHVVGGRRRDVTGALSGLQLFVLVSIHFLVFILVLKALSMRPPNIC
LECIPDGIQLNHGGSQNVQEVSRSLKAIIMNDLWLLHDDLEQSLPRNIND
APDEQLLPGLRRVREVSGARIPTLLLYLRCVDLLNGNGSSNSMALSPALD
DAPDEPAVMSIRSVNNTPSDQVLRGHRTTLFSFRTQHAGFSSMRNNSLRQ
L*
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spliced messenger RNA

>Ggra3793.t1 ID=Ggra3793.t1|Name=Ggra3793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000850_pilon:1857687..1860325- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCGTACAGCACGTCGTCGGAGGTCGCCGCCGTGACGTGACTGG
GGCCTTATCCGGCCTTCAGCTCTTTGTTCTTGTTAGCATTCATTTTCTTG
TATTTATTCTCGTACTCAAGGCTCTCTCCATGAGACCCCCTAATATTTGC
CTGGAATGCATTCCGGATGGGATACAACTTAACCATGGTGGATCACAAAA
TGTTCAAGAAGTCTCGCGATCTTTGAAGGCCATCATCATGAACGATCTCT
GGCTACTGCATGACGATTTGGAGCAATCGCTGCCAAGGAACATTAACGAT
GCACCAGACGAGCAGCTGCTTCCAGGGTTGCGCCGCGTTAGGGAAGTATC
TGGTGCCCGCATCCCCACCCTCCTCCTTTATTTACGCTGTGTAGACTTGT
TGAATGGAAATGGGTCGTCCAATTCAATGGCCTTGTCCCCAGCTCTGGAT
GATGCCCCGGACGAGCCGGCGGTTATGAGTATCCGCAGCGTTAATAACAC
ACCGAGTGACCAAGTTTTAAGGGGACACCGTACTACCTTATTCTCTTTCC
GAACTCAACATGCAGGATTCTCGTCGATGCGGAACAATTCACTGCGCCAG
CTTTGA
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protein sequence of Ggra3793.t1

>Ggra3793.t1 ID=Ggra3793.t1|Name=Ggra3793.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MLRVQHVVGGRRRDVTGALSGLQLFVLVSIHFLVFILVLKALSMRPPNIC
LECIPDGIQLNHGGSQNVQEVSRSLKAIIMNDLWLLHDDLEQSLPRNIND
APDEQLLPGLRRVREVSGARIPTLLLYLRCVDLLNGNGSSNSMALSPALD
DAPDEPAVMSIRSVNNTPSDQVLRGHRTTLFSFRTQHAGFSSMRNNSLRQ
L*
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mRNA from alignment at tig00000850_pilon:1857687..1860325-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3793.t1 ID=Ggra3793.t1|Name=Ggra3793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2639bp|location=Sequence derived from alignment at tig00000850_pilon:1857687..1860325- (Gracilaria gracilis GNS1m male)
ATGCTGCGCGTACAGCACGTCGTCGGAGGTCGCCGCCGTGACGTGACTGG
GGCCTTATCCGGCCTGTACTTAAACGCCACGACCTCTTCCCGCGCGGTGC
AAACCGTTTTATTTCGGTTCCTCTGTTCTATCGCTAAGAGCACGAGGTGC
TTGCTTGGCTCTCGAGTAATATCCAGAGCACAAAAGATGGCTCGCCCAGC
ATGTGCTCTGGATAGCACACTGCAGCCATAAATTGCAAATCTTTACTTCG
TTGCGGTGTTGTTGTCGCAGTCAGCTCTTTGTTCTTGTTAGGTGCGTCTG
GCTCTTTGGCGTTGCCTCAACTCTATTCTTTTCCTGTTTTTCGTTAACCT
TTTTGCTATTCTCTTCTTATCGATTTCCGTCTTTCCTTCAGCATTCATTT
TCTTGTATTTATTCTCGTAGTCTCTATACATAATAAAATCCTTTTCCACT
AAGAGTTTCCTACATGCCGGAAATTTATCGTTATGCTTCTTTTCATGGAG
GCGCTGATGCTCAGCAATCGTATCTATCACTTCCCTTTCGGAAAGGCCAA
AGAGGTCAGGAATCTGAGAGGTATTAAGTTCATTAACCGAAATCCGCGAA
CTTAAGCACGAATTGTGAAACACATGTTTGCAGTTCTTAACTTCCACGAG
ACCTTCCAAATCTTCAAGACAAATAGAGCACTTTCTCGGATGACTCAAAC
GCGGCTTCAAACTGAAACCTTGCTGGCTCATCGTAGAAGACGGATTTGTA
GTCAACGTCATAACATCGAAGCTCGACGGTCATGGTAAAGGCTCGGTCTC
CAAGAAGGCCTTAGCAGCTCTACTTCGAACGCAACAAGTCCATGAAAGCC
AAACAATGTGGCTATGATCTGTAATCTGCGACACGTAAATACCACAATTT
CTTTACACATGTTAAAGTCGTACAGTGTGTAGACCTATATGATTTATACG
TCAACGAAATATCTGCCTGACCTCCACCCTCACCTTGGCTGTGCCTTATC
CGGATTTAGTACGTCCGCTCGCCTATTCTACGTATCCCACGTTCACCTTT
CCGTATTTGCACAGGACAGGCCGGTACCTCCACGAAAGAACATCATGAAG
GGAATCCTTTTAGCCGGCTCGCCCGATCTCACTCCCATTCGCGGTATGGG
GAGCCTTTCCCAAAGGTTGGCTTGCCCACCTTATCGTTTTGGTTCCCAGC
GCTAGGAGATGCACCAGAAGAGCCGTTGCAACCGCCGGCAGACAACCTCA
ACGATGCACTAGACGAGCCAGTGCTTCCGCGGTTAGGCCACTTTGAGAAG
GTATCCGGAGCAGGCTTGCCCGCTCTTGTCTTACTGTGACGTTGTGTAGA
CTTGTCCATGGCAAATGGGTCGCCCATTGCAATGGCTTTGTGTCCAACGA
CGTAAATGCACCGGGTGAGCCGGTGCAACTGCCAGCGGACAGCCTCAACG
ATGCACCGGACGAGCCAGTGCTTCCGCGTTTGGGTAACGTTGAGGAGGTA
TCTGGGGCAGGGTTTTCTGCTCTTGTCCTCTTTTGACTTTTGTGGACGCG
GCCGTTGAAAATGGCTCGCCGATTGCAATGGATTTGTGTCCAGTGCCCTA
GATGCACCAGACGAGCAGGGGCTTCCGCTGTTGCTCAACGTTGAGGAGGT
ATCCGGAGCATGTTTGCGGCTCTTGTCCTTCAGAGAACCCCACACTCTCC
CGCAATTCTCTGTATTCTGTGGCCAATTTTATCCGTTCTCATTAACGCCA
ATCCCTGCCGCTTCCCGCACAGTCTGGCAATTACAATTTCATCCGCAGAA
CCCACACCCTTACTTAAATTTGGATGCAGTGCCGCGTCCTTGACGTTTAT
GTGGCTTAGACCACCGAGACTGTTTCCCCTGTCACTCCTTCAATCTGGGC
TTATACTCGTTCTCCTAAATCGATCTTTTTAAACTCTGCATACAAACCGC
TTCCAGCATACTTTGTGAATCGCTAGTATGCGCGTCATTGACTTTCACAA
CGCCTGAAAGGAGGGCATTCCCGACCTTCCTCTTGACACGAACAGTCTTT
TTTAGCTCAAGGCTCTCTCCATGAGACCCCCTAATATTTGCCTGGAATGC
ATTCCGGATGGGATACAACTTAACCATGGTGGATCACAAAATGTTCAAGA
AGTCTCGCGATCTTTGAAGGCCATCATCATGAACGATCTCTGGTGCGGTC
CTGCCCAACAGCAACAGTAATCTAATTGTGTTGTGGCACGCAATAGTTAA
GCTTTCGCAAAGGCTTTTTCTTATCCTTTTATAGGCTACTGCATGACGAT
TTGGAGCAATCGCTGCCAAGGAACATTAACGATGCACCAGACGAGCAGCT
GCTTCCAGGGTTGCGCCGCGTTAGGGAAGTATCTGGTGCCCGCATCCCCA
CCCTCCTCCTTTATTTACGCTGTGTAGACTTGTTGAATGGAAATGGGTCG
TCCAATTCAATGGCCTTGTCCCCAGCTCTGGATGATGCCCCGGACGAGCC
GGCGGTTATGAGTATCCGCAGCGTTAATAACACACCGAGTGACCAAGTTT
TAAGGGGACACCGTACTACCTTATTCTCTTTCCGAACTCAACATGCAGGA
TTCTCGTCGATGCGGAACAATTCACTGCGCCAGCTTTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1857687..1860325-

>Ggra3793.t1 ID=Ggra3793.t1|Name=Ggra3793.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000850_pilon:1857687..1860325- (Gracilaria gracilis GNS1m male)
ATGCTGCGCGTACAGCACGTCGTCGGAGGTCGCCGCCGTGACGTGACTGG
GGCCTTATCCGGCCTTCAGCTCTTTGTTCTTGTTAGCATTCATTTTCTTG
TATTTATTCTCGTACTCAAGGCTCTCTCCATGAGACCCCCTAATATTTGC
CTGGAATGCATTCCGGATGGGATACAACTTAACCATGGTGGATCACAAAA
TGTTCAAGAAGTCTCGCGATCTTTGAAGGCCATCATCATGAACGATCTCT
GGCTACTGCATGACGATTTGGAGCAATCGCTGCCAAGGAACATTAACGAT
GCACCAGACGAGCAGCTGCTTCCAGGGTTGCGCCGCGTTAGGGAAGTATC
TGGTGCCCGCATCCCCACCCTCCTCCTTTATTTACGCTGTGTAGACTTGT
TGAATGGAAATGGGTCGTCCAATTCAATGGCCTTGTCCCCAGCTCTGGAT
GATGCCCCGGACGAGCCGGCGGTTATGAGTATCCGCAGCGTTAATAACAC
ACCGAGTGACCAAGTTTTAAGGGGACACCGTACTACCTTATTCTCTTTCC
GAACTCAACATGCAGGATTCTCGTCGATGCGGAACAATTCACTGCGCCAG
CTTTGA
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