Ggra3790.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3790.t1
Unique NameGgra3790.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1780763..1781263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3790Ggra3790Gracilaria gracilis GNS1m malegenetig00000850_pilon 1780763..1781263 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3790.t1.stop1Ggra3790.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1780763..1780765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3790.t1.CDS1Ggra3790.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1780763..1781263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3790.t1.exon1Ggra3790.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1780763..1781263 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3790.t1.start1Ggra3790.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1781261..1781263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3790.t1Ggra3790.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1780763..1781263 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3790.t1 ID=Ggra3790.t1|Name=Ggra3790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=167bp
MAPNPPKHSSSRSSSTPGARRQDNRSPSKKTSPSKSQKARSSAGSSSSHA
RHVSMSPPSSSPHSRQKNDDNIPYSLKDAPAELRPAIKRKQNREHAKRSR
ERKRAEEEEMARKLQKNAERIQVLENQVNVLTQELFNEDKQSGGGSSSRD
VPSSPSTKPGFYGDPF*
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spliced messenger RNA

>Ggra3790.t1 ID=Ggra3790.t1|Name=Ggra3790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000850_pilon:1780763..1781263- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCAAACCCACCGAAGCACTCCAGCAGCCGCTCTTCTTCGACACC
CGGCGCGCGCAGACAAGATAATCGCAGCCCAAGCAAGAAGACATCGCCGT
CTAAATCGCAAAAAGCGCGTTCTTCGGCCGGCTCATCATCGTCACACGCG
AGACATGTCTCGATGTCGCCGCCATCTTCATCGCCTCACTCGCGGCAAAA
AAATGATGACAACATCCCGTACAGTCTAAAGGACGCCCCAGCTGAATTAC
GCCCGGCCATAAAACGGAAGCAGAACAGGGAACATGCTAAAAGAAGCCGT
GAACGGAAGCGAGCAGAGGAGGAGGAGATGGCTCGAAAACTTCAGAAGAA
TGCGGAGCGTATTCAAGTGCTGGAGAATCAAGTGAACGTTTTGACACAAG
AATTGTTCAATGAGGACAAACAATCCGGCGGTGGCAGCAGCAGCAGAGAT
GTGCCGAGCTCTCCTAGCACGAAGCCAGGCTTCTACGGCGATCCATTCTG
A
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protein sequence of Ggra3790.t1

>Ggra3790.t1 ID=Ggra3790.t1|Name=Ggra3790.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MAPNPPKHSSSRSSSTPGARRQDNRSPSKKTSPSKSQKARSSAGSSSSHA
RHVSMSPPSSSPHSRQKNDDNIPYSLKDAPAELRPAIKRKQNREHAKRSR
ERKRAEEEEMARKLQKNAERIQVLENQVNVLTQELFNEDKQSGGGSSSRD
VPSSPSTKPGFYGDPF*
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mRNA from alignment at tig00000850_pilon:1780763..1781263-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3790.t1 ID=Ggra3790.t1|Name=Ggra3790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000850_pilon:1780763..1781263- (Gracilaria gracilis GNS1m male)
ATGGCTCCAAACCCACCGAAGCACTCCAGCAGCCGCTCTTCTTCGACACC
CGGCGCGCGCAGACAAGATAATCGCAGCCCAAGCAAGAAGACATCGCCGT
CTAAATCGCAAAAAGCGCGTTCTTCGGCCGGCTCATCATCGTCACACGCG
AGACATGTCTCGATGTCGCCGCCATCTTCATCGCCTCACTCGCGGCAAAA
AAATGATGACAACATCCCGTACAGTCTAAAGGACGCCCCAGCTGAATTAC
GCCCGGCCATAAAACGGAAGCAGAACAGGGAACATGCTAAAAGAAGCCGT
GAACGGAAGCGAGCAGAGGAGGAGGAGATGGCTCGAAAACTTCAGAAGAA
TGCGGAGCGTATTCAAGTGCTGGAGAATCAAGTGAACGTTTTGACACAAG
AATTGTTCAATGAGGACAAACAATCCGGCGGTGGCAGCAGCAGCAGAGAT
GTGCCGAGCTCTCCTAGCACGAAGCCAGGCTTCTACGGCGATCCATTCTG
A
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Coding sequence (CDS) from alignment at tig00000850_pilon:1780763..1781263-

>Ggra3790.t1 ID=Ggra3790.t1|Name=Ggra3790.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00000850_pilon:1780763..1781263- (Gracilaria gracilis GNS1m male)
ATGGCTCCAAACCCACCGAAGCACTCCAGCAGCCGCTCTTCTTCGACACC
CGGCGCGCGCAGACAAGATAATCGCAGCCCAAGCAAGAAGACATCGCCGT
CTAAATCGCAAAAAGCGCGTTCTTCGGCCGGCTCATCATCGTCACACGCG
AGACATGTCTCGATGTCGCCGCCATCTTCATCGCCTCACTCGCGGCAAAA
AAATGATGACAACATCCCGTACAGTCTAAAGGACGCCCCAGCTGAATTAC
GCCCGGCCATAAAACGGAAGCAGAACAGGGAACATGCTAAAAGAAGCCGT
GAACGGAAGCGAGCAGAGGAGGAGGAGATGGCTCGAAAACTTCAGAAGAA
TGCGGAGCGTATTCAAGTGCTGGAGAATCAAGTGAACGTTTTGACACAAG
AATTGTTCAATGAGGACAAACAATCCGGCGGTGGCAGCAGCAGCAGAGAT
GTGCCGAGCTCTCCTAGCACGAAGCCAGGCTTCTACGGCGATCCATTCTG
A
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