Ggra3787.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3787.t1
Unique NameGgra3787.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1767729..1768628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3787Ggra3787Gracilaria gracilis GNS1m malegenetig00000850_pilon 1767729..1768628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3787.t1.stop1Ggra3787.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1767729..1767731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3787.t1.CDS1Ggra3787.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1767729..1768628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3787.t1.exon1Ggra3787.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1767729..1768628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3787.t1.start1Ggra3787.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1768626..1768628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3787.t1Ggra3787.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1767729..1768628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3787.t1 ID=Ggra3787.t1|Name=Ggra3787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MKLLVFFFALFSFAWCSVVDNQISGTSVHSGIYLLDECDHCSYDSQCRTY
KCWAGKCVRDDFTSLKRCGFLGECEYCRKDFDCATKKCWNGKCVFENDKD
KCFKKDECDHCSRDSECKTHKCWAGKCVKDDFSSLKKCGFLDECEHCRKD
FDCATKKCWNGKCVFENDKDKCFKKDECDHCSRDSECKTHKCWAGKCVKD
HFSSLKRCGFLGECEHCSSAYDCATKKCWNGKCVFDTDASRRKCFKKKDC
EECYSDDECKSYKCFRNKCVKWGDAHAIASCFTRDYKLPHGLPHGFKLH*
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spliced messenger RNA

>Ggra3787.t1 ID=Ggra3787.t1|Name=Ggra3787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000850_pilon:1767729..1768628- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTCTTGTATTCTTCTTCGCCTTGTTCTCCTTTGCCTGGTGCTC
GGTTGTCGACAATCAGATTTCAGGAACATCTGTACACAGTGGAATCTATC
TCCTCGACGAATGTGACCATTGCTCTTACGATAGCCAATGCCGCACCTAC
AAATGCTGGGCTGGAAAGTGCGTCAGAGATGACTTCACATCTCTCAAACG
ATGTGGCTTCTTGGGCGAGTGCGAGTACTGCCGTAAGGACTTTGATTGTG
CCACCAAGAAATGCTGGAACGGCAAGTGCGTATTTGAGAACGATAAGGAC
AAATGCTTCAAGAAGGACGAATGTGACCACTGCAGTCGAGACTCAGAGTG
CAAGACACACAAATGCTGGGCTGGGAAATGCGTGAAAGATGACTTTTCAT
CCCTGAAGAAATGTGGATTCTTGGACGAATGCGAGCACTGCCGTAAGGAC
TTTGATTGCGCCACCAAGAAATGCTGGAACGGCAAGTGCGTGTTTGAGAA
CGATAAGGACAAATGCTTCAAGAAGGACGAATGTGACCACTGCAGTCGAG
ACTCAGAGTGCAAGACACACAAATGCTGGGCTGGGAAATGCGTGAAAGAT
CACTTTTCATCCCTGAAGAGATGTGGATTCTTGGGCGAATGCGAGCACTG
CAGTTCGGCCTATGATTGCGCCACCAAGAAATGCTGGAACGGCAAATGTG
TGTTTGACACTGATGCGTCGCGAAGGAAGTGTTTCAAGAAGAAGGACTGT
GAAGAATGTTATTCCGATGATGAGTGTAAGAGTTACAAGTGCTTCCGAAA
CAAATGCGTGAAATGGGGTGACGCTCATGCTATCGCATCATGCTTCACGA
GGGACTATAAGTTGCCTCATGGGTTGCCTCATGGGTTCAAACTCCATTAG
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protein sequence of Ggra3787.t1

>Ggra3787.t1 ID=Ggra3787.t1|Name=Ggra3787.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MKLLVFFFALFSFAWCSVVDNQISGTSVHSGIYLLDECDHCSYDSQCRTY
KCWAGKCVRDDFTSLKRCGFLGECEYCRKDFDCATKKCWNGKCVFENDKD
KCFKKDECDHCSRDSECKTHKCWAGKCVKDDFSSLKKCGFLDECEHCRKD
FDCATKKCWNGKCVFENDKDKCFKKDECDHCSRDSECKTHKCWAGKCVKD
HFSSLKRCGFLGECEHCSSAYDCATKKCWNGKCVFDTDASRRKCFKKKDC
EECYSDDECKSYKCFRNKCVKWGDAHAIASCFTRDYKLPHGLPHGFKLH*
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mRNA from alignment at tig00000850_pilon:1767729..1768628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3787.t1 ID=Ggra3787.t1|Name=Ggra3787.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000850_pilon:1767729..1768628- (Gracilaria gracilis GNS1m male)
ATGAAGCTTCTTGTATTCTTCTTCGCCTTGTTCTCCTTTGCCTGGTGCTC
GGTTGTCGACAATCAGATTTCAGGAACATCTGTACACAGTGGAATCTATC
TCCTCGACGAATGTGACCATTGCTCTTACGATAGCCAATGCCGCACCTAC
AAATGCTGGGCTGGAAAGTGCGTCAGAGATGACTTCACATCTCTCAAACG
ATGTGGCTTCTTGGGCGAGTGCGAGTACTGCCGTAAGGACTTTGATTGTG
CCACCAAGAAATGCTGGAACGGCAAGTGCGTATTTGAGAACGATAAGGAC
AAATGCTTCAAGAAGGACGAATGTGACCACTGCAGTCGAGACTCAGAGTG
CAAGACACACAAATGCTGGGCTGGGAAATGCGTGAAAGATGACTTTTCAT
CCCTGAAGAAATGTGGATTCTTGGACGAATGCGAGCACTGCCGTAAGGAC
TTTGATTGCGCCACCAAGAAATGCTGGAACGGCAAGTGCGTGTTTGAGAA
CGATAAGGACAAATGCTTCAAGAAGGACGAATGTGACCACTGCAGTCGAG
ACTCAGAGTGCAAGACACACAAATGCTGGGCTGGGAAATGCGTGAAAGAT
CACTTTTCATCCCTGAAGAGATGTGGATTCTTGGGCGAATGCGAGCACTG
CAGTTCGGCCTATGATTGCGCCACCAAGAAATGCTGGAACGGCAAATGTG
TGTTTGACACTGATGCGTCGCGAAGGAAGTGTTTCAAGAAGAAGGACTGT
GAAGAATGTTATTCCGATGATGAGTGTAAGAGTTACAAGTGCTTCCGAAA
CAAATGCGTGAAATGGGGTGACGCTCATGCTATCGCATCATGCTTCACGA
GGGACTATAAGTTGCCTCATGGGTTGCCTCATGGGTTCAAACTCCATTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1767729..1768628-

>Ggra3787.t1 ID=Ggra3787.t1|Name=Ggra3787.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000850_pilon:1767729..1768628- (Gracilaria gracilis GNS1m male)
ATGAAGCTTCTTGTATTCTTCTTCGCCTTGTTCTCCTTTGCCTGGTGCTC
GGTTGTCGACAATCAGATTTCAGGAACATCTGTACACAGTGGAATCTATC
TCCTCGACGAATGTGACCATTGCTCTTACGATAGCCAATGCCGCACCTAC
AAATGCTGGGCTGGAAAGTGCGTCAGAGATGACTTCACATCTCTCAAACG
ATGTGGCTTCTTGGGCGAGTGCGAGTACTGCCGTAAGGACTTTGATTGTG
CCACCAAGAAATGCTGGAACGGCAAGTGCGTATTTGAGAACGATAAGGAC
AAATGCTTCAAGAAGGACGAATGTGACCACTGCAGTCGAGACTCAGAGTG
CAAGACACACAAATGCTGGGCTGGGAAATGCGTGAAAGATGACTTTTCAT
CCCTGAAGAAATGTGGATTCTTGGACGAATGCGAGCACTGCCGTAAGGAC
TTTGATTGCGCCACCAAGAAATGCTGGAACGGCAAGTGCGTGTTTGAGAA
CGATAAGGACAAATGCTTCAAGAAGGACGAATGTGACCACTGCAGTCGAG
ACTCAGAGTGCAAGACACACAAATGCTGGGCTGGGAAATGCGTGAAAGAT
CACTTTTCATCCCTGAAGAGATGTGGATTCTTGGGCGAATGCGAGCACTG
CAGTTCGGCCTATGATTGCGCCACCAAGAAATGCTGGAACGGCAAATGTG
TGTTTGACACTGATGCGTCGCGAAGGAAGTGTTTCAAGAAGAAGGACTGT
GAAGAATGTTATTCCGATGATGAGTGTAAGAGTTACAAGTGCTTCCGAAA
CAAATGCGTGAAATGGGGTGACGCTCATGCTATCGCATCATGCTTCACGA
GGGACTATAAGTTGCCTCATGGGTTGCCTCATGGGTTCAAACTCCATTAG
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