Ggra3786.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3786.t1
Unique Name	Ggra3786.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	305

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1766351..1767265 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7029.ACYPI009749-PA
PFAMs	Pkinase
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K08958
KEGG Pathway	ko04340,ko04341,map04340,map04341
Evalue	2.96e-54
EggNOG OGs	KOG1164@1\|root,KOG1165@2759\|Eukaryota,38BTT@33154\|Opisthokonta,3BE4B@33208\|Metazoa,3CS1U@33213\|Bilateria,41WJD@6656\|Arthropoda,3SGCP@50557\|Insecta
EC	2.7.11.1
Description	protein serine threonine kinase activity. It is involved in the biological process described with protein phosphorylation
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3786	Ggra3786	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1766351..1767265 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3786.t1.stop1	Ggra3786.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1766351..1766353 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3786.t1.CDS1	Ggra3786.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1766351..1767265 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3786.t1.exon1	Ggra3786.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1766351..1767265 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3786.t1.start1	Ggra3786.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1767263..1767265 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3786.t1	Ggra3786.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1766351..1767265 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1766351..1767265-
coding sequence from alignment at tig00000850_pilon:1766351..1767265-

mRNA sequence

>Ggra3786.t1 ID=Ggra3786.t1|Name=Ggra3786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MPLKSIIGSLLAGKYMLLKCLGSGAYGTVYAATDVRTREPYAVKVEDLET
RSPSLKYECSIYRRLHQFGEVKGVPKVYHYEENESFRALVMDRLAENIES
GNTLVLLPANQVFDIGYRGVGILKTIHAKGFLHLDLKPDNLMYGFPKKGK
NFLYIVDYGMAESLIDWRTGKHRTIKKEPNVGGSITFSSINTHNRVSRSR
KDDLESLGYSLICLFKGMLPWESDFTSSGKIKSFELGTDSHDEMYDQAGI
MKEEITVESLCEGLPEAMQTYFRYVRNLSFSEEPNYEYLMTIFQKGIQKN
CVKL*

spliced messenger RNA

>Ggra3786.t1 ID=Ggra3786.t1|Name=Ggra3786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000850_pilon:1766351..1767265- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTCAAGAGCATTATTGGATCTCTACTTGCAGGAAAATACATGCT
TCTAAAATGTTTAGGGAGTGGGGCTTATGGTACGGTTTATGCTGCGACCG
ACGTTAGAACAAGGGAACCATATGCGGTGAAGGTCGAAGATTTAGAAACA
AGAAGCCCAAGTCTGAAATATGAATGTTCGATATACCGAAGACTTCACCA
GTTCGGAGAGGTGAAGGGGGTTCCCAAAGTTTACCACTATGAAGAAAATG
AGAGCTTCAGAGCTTTGGTGATGGACAGACTTGCAGAAAATATAGAAAGT
GGTAACACACTCGTCCTGCTACCAGCCAATCAGGTTTTTGACATAGGGTA
TAGAGGCGTTGGTATCCTCAAAACTATTCATGCCAAAGGCTTTCTGCATT
TAGACCTGAAACCAGACAATCTGATGTATGGCTTTCCGAAGAAAGGGAAA
AACTTTCTTTATATCGTTGATTATGGCATGGCTGAATCTCTAATTGATTG
GAGAACGGGAAAGCATCGGACAATTAAGAAAGAACCCAACGTTGGCGGAT
CGATAACATTTTCATCGATCAACACCCATAATCGTGTTAGTCGCTCTAGA
AAAGATGACTTGGAAAGCTTGGGGTACTCGCTTATATGCCTGTTCAAAGG
CATGTTGCCATGGGAGTCCGATTTCACATCAAGTGGGAAAATTAAATCCT
TCGAATTGGGAACGGACTCCCATGATGAGATGTATGATCAAGCAGGTATA
ATGAAAGAAGAAATCACTGTGGAGAGCTTATGTGAGGGGCTACCGGAAGC
GATGCAAACCTACTTTCGATATGTTCGGAACCTCTCGTTTTCAGAGGAGC
CAAACTACGAGTACTTGATGACAATATTCCAAAAAGGAATACAAAAAAAT
TGCGTCAAACTTTGA

protein sequence of Ggra3786.t1

>Ggra3786.t1 ID=Ggra3786.t1|Name=Ggra3786.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MPLKSIIGSLLAGKYMLLKCLGSGAYGTVYAATDVRTREPYAVKVEDLET
RSPSLKYECSIYRRLHQFGEVKGVPKVYHYEENESFRALVMDRLAENIES
GNTLVLLPANQVFDIGYRGVGILKTIHAKGFLHLDLKPDNLMYGFPKKGK
NFLYIVDYGMAESLIDWRTGKHRTIKKEPNVGGSITFSSINTHNRVSRSR
KDDLESLGYSLICLFKGMLPWESDFTSSGKIKSFELGTDSHDEMYDQAGI
MKEEITVESLCEGLPEAMQTYFRYVRNLSFSEEPNYEYLMTIFQKGIQKN
CVKL*

mRNA from alignment at tig00000850_pilon:1766351..1767265-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3786.t1 ID=Ggra3786.t1|Name=Ggra3786.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000850_pilon:1766351..1767265- (Gracilaria gracilis GNS1m male)
ATGCCGCTCAAGAGCATTATTGGATCTCTACTTGCAGGAAAATACATGCT
TCTAAAATGTTTAGGGAGTGGGGCTTATGGTACGGTTTATGCTGCGACCG
ACGTTAGAACAAGGGAACCATATGCGGTGAAGGTCGAAGATTTAGAAACA
AGAAGCCCAAGTCTGAAATATGAATGTTCGATATACCGAAGACTTCACCA
GTTCGGAGAGGTGAAGGGGGTTCCCAAAGTTTACCACTATGAAGAAAATG
AGAGCTTCAGAGCTTTGGTGATGGACAGACTTGCAGAAAATATAGAAAGT
GGTAACACACTCGTCCTGCTACCAGCCAATCAGGTTTTTGACATAGGGTA
TAGAGGCGTTGGTATCCTCAAAACTATTCATGCCAAAGGCTTTCTGCATT
TAGACCTGAAACCAGACAATCTGATGTATGGCTTTCCGAAGAAAGGGAAA
AACTTTCTTTATATCGTTGATTATGGCATGGCTGAATCTCTAATTGATTG
GAGAACGGGAAAGCATCGGACAATTAAGAAAGAACCCAACGTTGGCGGAT
CGATAACATTTTCATCGATCAACACCCATAATCGTGTTAGTCGCTCTAGA
AAAGATGACTTGGAAAGCTTGGGGTACTCGCTTATATGCCTGTTCAAAGG
CATGTTGCCATGGGAGTCCGATTTCACATCAAGTGGGAAAATTAAATCCT
TCGAATTGGGAACGGACTCCCATGATGAGATGTATGATCAAGCAGGTATA
ATGAAAGAAGAAATCACTGTGGAGAGCTTATGTGAGGGGCTACCGGAAGC
GATGCAAACCTACTTTCGATATGTTCGGAACCTCTCGTTTTCAGAGGAGC
CAAACTACGAGTACTTGATGACAATATTCCAAAAAGGAATACAAAAAAAT
TGCGTCAAACTTTGA

Coding sequence (CDS) from alignment at tig00000850_pilon:1766351..1767265-

>Ggra3786.t1 ID=Ggra3786.t1|Name=Ggra3786.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000850_pilon:1766351..1767265- (Gracilaria gracilis GNS1m male)
ATGCCGCTCAAGAGCATTATTGGATCTCTACTTGCAGGAAAATACATGCT
TCTAAAATGTTTAGGGAGTGGGGCTTATGGTACGGTTTATGCTGCGACCG
ACGTTAGAACAAGGGAACCATATGCGGTGAAGGTCGAAGATTTAGAAACA
AGAAGCCCAAGTCTGAAATATGAATGTTCGATATACCGAAGACTTCACCA
GTTCGGAGAGGTGAAGGGGGTTCCCAAAGTTTACCACTATGAAGAAAATG
AGAGCTTCAGAGCTTTGGTGATGGACAGACTTGCAGAAAATATAGAAAGT
GGTAACACACTCGTCCTGCTACCAGCCAATCAGGTTTTTGACATAGGGTA
TAGAGGCGTTGGTATCCTCAAAACTATTCATGCCAAAGGCTTTCTGCATT
TAGACCTGAAACCAGACAATCTGATGTATGGCTTTCCGAAGAAAGGGAAA
AACTTTCTTTATATCGTTGATTATGGCATGGCTGAATCTCTAATTGATTG
GAGAACGGGAAAGCATCGGACAATTAAGAAAGAACCCAACGTTGGCGGAT
CGATAACATTTTCATCGATCAACACCCATAATCGTGTTAGTCGCTCTAGA
AAAGATGACTTGGAAAGCTTGGGGTACTCGCTTATATGCCTGTTCAAAGG
CATGTTGCCATGGGAGTCCGATTTCACATCAAGTGGGAAAATTAAATCCT
TCGAATTGGGAACGGACTCCCATGATGAGATGTATGATCAAGCAGGTATA
ATGAAAGAAGAAATCACTGTGGAGAGCTTATGTGAGGGGCTACCGGAAGC
GATGCAAACCTACTTTCGATATGTTCGGAACCTCTCGTTTTCAGAGGAGC
CAAACTACGAGTACTTGATGACAATATTCCAAAAAGGAATACAAAAAAAT
TGCGTCAAACTTTGA