Ggra378.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra378.t1
Unique NameGgra378.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:217092..217985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008876463.1
PFAMsAcyltransferase
Max annot lvl2759|Eukaryota
Evalue5.57e-09
EggNOG OGs28MBJ@1|root,2QTUZ@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra378Ggra378Gracilaria gracilis GNS1m malegenetig00000950_pilon 217092..217985 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra378.t1.start1Ggra378.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 217092..217094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra378.t1.CDS1Ggra378.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 217092..217985 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra378.t1.exon1Ggra378.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 217092..217985 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra378.t1.stop1Ggra378.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 217983..217985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra378.t1Ggra378.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 217092..217985 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra378.t1 ID=Ggra378.t1|Name=Ggra378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MEKYRSTADPSTGIHPFIPPTTRLFSPPLRPIFTLIRLPMFLLLFIPFSL
LSTLFFFLPSFLSYPLRRILDKLFLPYILLSLSVIPAYSSLEQPRVRDAT
PGKHPSRSDIILTNISSPLDVLLLSFSYSPTFAVPSQQNPAHLHSLTLLQ
AFQSICSTLPQPSSTPKPPQALLGNGPLCILAEGCSTNGKGVLRFSYKLD
SSSIPERSVLYACGISYTSKASACRTIQSLSKTLLHAMGLWKLSSRIRLS
AVPREGVDHQSSVAALAGVPPLKIGYEAAQQFAQHWEQTTCSKPHTQ*
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spliced messenger RNA

>Ggra378.t1 ID=Ggra378.t1|Name=Ggra378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000950_pilon:217092..217985+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAGTACCGCTCCACGGCCGACCCCTCAACCGGCATCCATCCGTT
CATCCCACCAACCACGCGTCTCTTTAGCCCGCCGCTCCGCCCCATCTTCA
CACTCATCCGTCTGCCGATGTTCCTGCTGCTCTTCATTCCATTTTCACTT
TTGAGCACCCTCTTCTTCTTCCTTCCGTCATTCCTTTCATACCCCCTCCG
TCGAATTCTCGACAAGCTCTTCCTTCCATACATTCTTCTATCGCTTTCTG
TCATTCCAGCCTACTCATCTTTAGAACAACCACGCGTGCGAGACGCCACT
CCAGGAAAGCATCCCTCACGCTCCGACATCATACTCACCAATATCTCCTC
ACCACTTGACGTTCTGCTTTTGTCATTTTCGTACTCACCAACCTTTGCAG
TACCATCGCAACAAAACCCAGCCCACCTCCATTCCCTCACACTTCTCCAA
GCGTTTCAGAGCATATGCTCAACTCTGCCACAGCCAAGCTCCACACCAAA
GCCGCCGCAAGCCCTTCTCGGAAACGGCCCGCTCTGCATCCTCGCAGAAG
GATGTTCAACAAACGGCAAGGGCGTTCTTCGTTTCTCGTACAAACTCGAC
TCGTCGTCCATCCCCGAACGGAGCGTGCTTTACGCCTGCGGTATCTCTTA
TACGTCGAAGGCATCAGCGTGCCGAACCATTCAATCGCTGTCGAAAACAC
TGCTGCACGCCATGGGGCTTTGGAAGCTATCATCGCGAATCCGCTTGTCT
GCCGTGCCGCGGGAGGGAGTCGATCATCAATCATCTGTAGCCGCGCTCGC
CGGAGTACCTCCGCTGAAGATCGGGTATGAAGCGGCACAGCAGTTTGCAC
AACATTGGGAGCAGACAACATGCAGCAAACCGCATACCCAATAG
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protein sequence of Ggra378.t1

>Ggra378.t1 ID=Ggra378.t1|Name=Ggra378.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MEKYRSTADPSTGIHPFIPPTTRLFSPPLRPIFTLIRLPMFLLLFIPFSL
LSTLFFFLPSFLSYPLRRILDKLFLPYILLSLSVIPAYSSLEQPRVRDAT
PGKHPSRSDIILTNISSPLDVLLLSFSYSPTFAVPSQQNPAHLHSLTLLQ
AFQSICSTLPQPSSTPKPPQALLGNGPLCILAEGCSTNGKGVLRFSYKLD
SSSIPERSVLYACGISYTSKASACRTIQSLSKTLLHAMGLWKLSSRIRLS
AVPREGVDHQSSVAALAGVPPLKIGYEAAQQFAQHWEQTTCSKPHTQ*
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mRNA from alignment at tig00000950_pilon:217092..217985+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra378.t1 ID=Ggra378.t1|Name=Ggra378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000950_pilon:217092..217985+ (Gracilaria gracilis GNS1m male)
ATGGAAAAGTACCGCTCCACGGCCGACCCCTCAACCGGCATCCATCCGTT
CATCCCACCAACCACGCGTCTCTTTAGCCCGCCGCTCCGCCCCATCTTCA
CACTCATCCGTCTGCCGATGTTCCTGCTGCTCTTCATTCCATTTTCACTT
TTGAGCACCCTCTTCTTCTTCCTTCCGTCATTCCTTTCATACCCCCTCCG
TCGAATTCTCGACAAGCTCTTCCTTCCATACATTCTTCTATCGCTTTCTG
TCATTCCAGCCTACTCATCTTTAGAACAACCACGCGTGCGAGACGCCACT
CCAGGAAAGCATCCCTCACGCTCCGACATCATACTCACCAATATCTCCTC
ACCACTTGACGTTCTGCTTTTGTCATTTTCGTACTCACCAACCTTTGCAG
TACCATCGCAACAAAACCCAGCCCACCTCCATTCCCTCACACTTCTCCAA
GCGTTTCAGAGCATATGCTCAACTCTGCCACAGCCAAGCTCCACACCAAA
GCCGCCGCAAGCCCTTCTCGGAAACGGCCCGCTCTGCATCCTCGCAGAAG
GATGTTCAACAAACGGCAAGGGCGTTCTTCGTTTCTCGTACAAACTCGAC
TCGTCGTCCATCCCCGAACGGAGCGTGCTTTACGCCTGCGGTATCTCTTA
TACGTCGAAGGCATCAGCGTGCCGAACCATTCAATCGCTGTCGAAAACAC
TGCTGCACGCCATGGGGCTTTGGAAGCTATCATCGCGAATCCGCTTGTCT
GCCGTGCCGCGGGAGGGAGTCGATCATCAATCATCTGTAGCCGCGCTCGC
CGGAGTACCTCCGCTGAAGATCGGGTATGAAGCGGCACAGCAGTTTGCAC
AACATTGGGAGCAGACAACATGCAGCAAACCGCATACCCAATAG
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Coding sequence (CDS) from alignment at tig00000950_pilon:217092..217985+

>Ggra378.t1 ID=Ggra378.t1|Name=Ggra378.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000950_pilon:217092..217985+ (Gracilaria gracilis GNS1m male)
ATGGAAAAGTACCGCTCCACGGCCGACCCCTCAACCGGCATCCATCCGTT
CATCCCACCAACCACGCGTCTCTTTAGCCCGCCGCTCCGCCCCATCTTCA
CACTCATCCGTCTGCCGATGTTCCTGCTGCTCTTCATTCCATTTTCACTT
TTGAGCACCCTCTTCTTCTTCCTTCCGTCATTCCTTTCATACCCCCTCCG
TCGAATTCTCGACAAGCTCTTCCTTCCATACATTCTTCTATCGCTTTCTG
TCATTCCAGCCTACTCATCTTTAGAACAACCACGCGTGCGAGACGCCACT
CCAGGAAAGCATCCCTCACGCTCCGACATCATACTCACCAATATCTCCTC
ACCACTTGACGTTCTGCTTTTGTCATTTTCGTACTCACCAACCTTTGCAG
TACCATCGCAACAAAACCCAGCCCACCTCCATTCCCTCACACTTCTCCAA
GCGTTTCAGAGCATATGCTCAACTCTGCCACAGCCAAGCTCCACACCAAA
GCCGCCGCAAGCCCTTCTCGGAAACGGCCCGCTCTGCATCCTCGCAGAAG
GATGTTCAACAAACGGCAAGGGCGTTCTTCGTTTCTCGTACAAACTCGAC
TCGTCGTCCATCCCCGAACGGAGCGTGCTTTACGCCTGCGGTATCTCTTA
TACGTCGAAGGCATCAGCGTGCCGAACCATTCAATCGCTGTCGAAAACAC
TGCTGCACGCCATGGGGCTTTGGAAGCTATCATCGCGAATCCGCTTGTCT
GCCGTGCCGCGGGAGGGAGTCGATCATCAATCATCTGTAGCCGCGCTCGC
CGGAGTACCTCCGCTGAAGATCGGGTATGAAGCGGCACAGCAGTTTGCAC
AACATTGGGAGCAGACAACATGCAGCAAACCGCATACCCAATAG
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