Ggra3778.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3778.t1
Unique Name	Ggra3778.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1640603..1642282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1157634.KB912999_gene4700
PFAMs	BBE,FAD_binding_4
Max annot lvl	201174\|Actinobacteria
Evalue	8.99e-36
EggNOG OGs	COG0277@1\|root,COG0277@2\|Bacteria,2GK5U@201174\|Actinobacteria
Description	PFAM FAD linked oxidase domain protein
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3778	Ggra3778	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1640603..1642282 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3778.t1.start1	Ggra3778.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1640603..1640605 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3778.t1.CDS1	Ggra3778.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1640603..1642282 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3778.t1.exon1	Ggra3778.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1640603..1642282 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3778.t1.stop1	Ggra3778.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1642280..1642282 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3778.t1	Ggra3778.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1640603..1642282 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1640603..1642282+
coding sequence from alignment at tig00000850_pilon:1640603..1642282+

mRNA sequence

>Ggra3778.t1 ID=Ggra3778.t1|Name=Ggra3778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=560bp
MQPLVHVRMSLLCPLLALLIARAVAYYKHPLLYYEPLPPKLPTEPHGPGA
LQSDNDPNPPRPLTAQILAATAPPPLSTLHHFLRCLPRPDYGPTVTIFGS
PEYEMLRQRSYQSNRSAPMAFAEARTEGDVQLLLFCANALRLPVCARAGG
HSLVGKSMCQGIVIDVGFIDHVTQVGDAREGLFDIGPGVTMGGVLWDLHS
HGRWFASGVCPAVGMGGYTLGGGHGPYEGRLGLAVDQVVGVRMIDRFGRV
IVANDHTNAELFWGVRGAGGSQFGIVTSFRVKTASAAPFDKAVVFRFKWP
TSVAGQFLHEWQQYDEDGGDVWFRVEMYLEKGGDGGVHGFGACYNVTAGL
DECWGRLSRTKFFNLPGRRTIFWSEATNALDVHAFFGPEGRWGRQRAVDI
SKALRVRRYQGANAGNDRLYQSTFLKWTQPPPAAFWQTYAEFCANPAGRD
SVDFVVCEMNLFNNAIDKAQNNSFAHRDAEVITHYIIGGGNLDDQIFMYE
WMRRHFSAYTKGVYVNYPELRLNDYATSYWGSSLPRLQLLKSEYDPFLFF
LNAQPIPTA*

spliced messenger RNA

>Ggra3778.t1 ID=Ggra3778.t1|Name=Ggra3778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000850_pilon:1640603..1642282+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCGCTTGTCCACGTGCGAATGTCACTGCTCTGCCCGTTATTGGC
CTTGCTGATCGCGCGTGCCGTCGCGTATTACAAGCATCCGTTGTTGTACT
ATGAGCCCCTCCCACCCAAGCTGCCCACCGAGCCGCACGGGCCCGGTGCT
CTTCAGTCGGACAACGATCCCAAccccccgcgaccgctcaccgcccagat
cctagccgcaaccgccccacctccGCTCTCCACGCTTCACCACTTCCTCC
GCTGCCTTCCTCGCCCGGACTACGGCCCGACCGTCACCATCTTCGGTTCG
CCCGAGTATGAAATGCTCCGACAGCGTTCGTATCAGTCCAACCGCTCGGC
GCCCATGGCGTTTGCCGAGGCTCGTACCGAAGGCGATGTGCAGCTACTCT
TGTTCTGCGCAAACGCGCTCCGACTGCCCGTGTGTGCGCGTGCGGGCGGC
CATTCGCTCGTTGGAAAGTCCATGTGTCAGGGCATCGTCATCGACGTCGG
CTTCATCGACCACGTCACGCAGGTGGGCGACGCCAGAGAAGGTTTGTTCG
ACATTGGCCCCGGCGTCACCATGGGCGGCGTGTTGTGGGATCTACATTCA
CACGGCAGATGGTTTGCAAGCGGCGTGTGTCCGGCAGTGGGAATGGGCGG
GTATACGTTGGGCGGTGGACATGGGCCGTATGAAGGGCGATTAGGGTTGG
CCGTCGATCAGGTGGTGGGTGTGCGCATGATCGATCGCTTCGGAAGAGTG
ATTGTGGCCAATGACCATACAAACGCAGAACTGTTCTGGGGTGTGCGTGG
AGCGGGCGGTAGTCAGTTTGGAATCGTGACAAGCTTCCGTGTCAAGACGG
CCAGCGCGGCGCCGTTCGATAAGGCGGTGGTGTTCCGCTTCAAGTGGCCC
ACGTCGGTGGCCGGGCAGTTTCTACACGAGTGGCAGCAGTATGATGAAGA
CGGAGGCGACGTTTGGTTCCGCGTGGAGATGTACCTGGAAAAGGGCGGCG
ATGGAGGAGTGCACGGCTTCGGAGCTTGCTACAATGTGACGGCAGGATTG
GACGAATGCTGGGGACGACTTTCCAGAACAAAGTTCTTCAACTTGCCCGG
ACGCAGGACGATTTTCTGGTCGGAGGCAACCAACGCGCTTGACGTGCATG
CATTCTTCGGACCGGAAGGTCGGTGGGGTCGACAACGAGCAGTGGATATT
AGCAAGGCACTGCGGGTGCGAAGATACCAGGGCGCCAATGCTGGGAATGA
TCGGTTGTATCAATCAACGTTCCTGAAATGGACTCAGCCGCCACCGGCGG
CGTTCTGGCAGACATATGCGGAGTTTTGTGCGAATCCCGCAGGGAGGGAC
AGCGTGGACTTTGTGGTGTGCGAGATGAATTTGTTCAACAATGCGATTGA
CAAAGCACAAAACAATTCGTTTGCTCATCGTGACGCGGAGGTGATCACCC
ACTACATCATAGGCGGGGGGAATTTGGATGACCAGATCTTCATGTATGAA
TGGATGAGAAGACATTTTAGCGCGTACACAAAGGGAGTGTATGTGAATTA
TCCGGAACTGAGACTGAATGACTACGCAACTTCGTACTGGGGGTCGAGCC
TGCCCAGACTTCAGCTTCTGAAAAGCGAGTATGACCCCTTTTTGTTCTTC
TTGAACGCGCAGCCGATTCCCACGGCATAG

protein sequence of Ggra3778.t1

>Ggra3778.t1 ID=Ggra3778.t1|Name=Ggra3778.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=560bp
MQPLVHVRMSLLCPLLALLIARAVAYYKHPLLYYEPLPPKLPTEPHGPGA
LQSDNDPNPPRPLTAQILAATAPPPLSTLHHFLRCLPRPDYGPTVTIFGS
PEYEMLRQRSYQSNRSAPMAFAEARTEGDVQLLLFCANALRLPVCARAGG
HSLVGKSMCQGIVIDVGFIDHVTQVGDAREGLFDIGPGVTMGGVLWDLHS
HGRWFASGVCPAVGMGGYTLGGGHGPYEGRLGLAVDQVVGVRMIDRFGRV
IVANDHTNAELFWGVRGAGGSQFGIVTSFRVKTASAAPFDKAVVFRFKWP
TSVAGQFLHEWQQYDEDGGDVWFRVEMYLEKGGDGGVHGFGACYNVTAGL
DECWGRLSRTKFFNLPGRRTIFWSEATNALDVHAFFGPEGRWGRQRAVDI
SKALRVRRYQGANAGNDRLYQSTFLKWTQPPPAAFWQTYAEFCANPAGRD
SVDFVVCEMNLFNNAIDKAQNNSFAHRDAEVITHYIIGGGNLDDQIFMYE
WMRRHFSAYTKGVYVNYPELRLNDYATSYWGSSLPRLQLLKSEYDPFLFF
LNAQPIPTA*

mRNA from alignment at tig00000850_pilon:1640603..1642282+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3778.t1 ID=Ggra3778.t1|Name=Ggra3778.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000850_pilon:1640603..1642282+ (Gracilaria gracilis GNS1m male)
ATGCAACCGCTTGTCCACGTGCGAATGTCACTGCTCTGCCCGTTATTGGC
CTTGCTGATCGCGCGTGCCGTCGCGTATTACAAGCATCCGTTGTTGTACT
ATGAGCCCCTCCCACCCAAGCTGCCCACCGAGCCGCACGGGCCCGGTGCT
CTTCAGTCGGACAACGATCCCAAccccccgcgaccgctcaccgcccagat
cctagccgcaaccgccccacctccGCTCTCCACGCTTCACCACTTCCTCC
GCTGCCTTCCTCGCCCGGACTACGGCCCGACCGTCACCATCTTCGGTTCG
CCCGAGTATGAAATGCTCCGACAGCGTTCGTATCAGTCCAACCGCTCGGC
GCCCATGGCGTTTGCCGAGGCTCGTACCGAAGGCGATGTGCAGCTACTCT
TGTTCTGCGCAAACGCGCTCCGACTGCCCGTGTGTGCGCGTGCGGGCGGC
CATTCGCTCGTTGGAAAGTCCATGTGTCAGGGCATCGTCATCGACGTCGG
CTTCATCGACCACGTCACGCAGGTGGGCGACGCCAGAGAAGGTTTGTTCG
ACATTGGCCCCGGCGTCACCATGGGCGGCGTGTTGTGGGATCTACATTCA
CACGGCAGATGGTTTGCAAGCGGCGTGTGTCCGGCAGTGGGAATGGGCGG
GTATACGTTGGGCGGTGGACATGGGCCGTATGAAGGGCGATTAGGGTTGG
CCGTCGATCAGGTGGTGGGTGTGCGCATGATCGATCGCTTCGGAAGAGTG
ATTGTGGCCAATGACCATACAAACGCAGAACTGTTCTGGGGTGTGCGTGG
AGCGGGCGGTAGTCAGTTTGGAATCGTGACAAGCTTCCGTGTCAAGACGG
CCAGCGCGGCGCCGTTCGATAAGGCGGTGGTGTTCCGCTTCAAGTGGCCC
ACGTCGGTGGCCGGGCAGTTTCTACACGAGTGGCAGCAGTATGATGAAGA
CGGAGGCGACGTTTGGTTCCGCGTGGAGATGTACCTGGAAAAGGGCGGCG
ATGGAGGAGTGCACGGCTTCGGAGCTTGCTACAATGTGACGGCAGGATTG
GACGAATGCTGGGGACGACTTTCCAGAACAAAGTTCTTCAACTTGCCCGG
ACGCAGGACGATTTTCTGGTCGGAGGCAACCAACGCGCTTGACGTGCATG
CATTCTTCGGACCGGAAGGTCGGTGGGGTCGACAACGAGCAGTGGATATT
AGCAAGGCACTGCGGGTGCGAAGATACCAGGGCGCCAATGCTGGGAATGA
TCGGTTGTATCAATCAACGTTCCTGAAATGGACTCAGCCGCCACCGGCGG
CGTTCTGGCAGACATATGCGGAGTTTTGTGCGAATCCCGCAGGGAGGGAC
AGCGTGGACTTTGTGGTGTGCGAGATGAATTTGTTCAACAATGCGATTGA
CAAAGCACAAAACAATTCGTTTGCTCATCGTGACGCGGAGGTGATCACCC
ACTACATCATAGGCGGGGGGAATTTGGATGACCAGATCTTCATGTATGAA
TGGATGAGAAGACATTTTAGCGCGTACACAAAGGGAGTGTATGTGAATTA
TCCGGAACTGAGACTGAATGACTACGCAACTTCGTACTGGGGGTCGAGCC
TGCCCAGACTTCAGCTTCTGAAAAGCGAGTATGACCCCTTTTTGTTCTTC
TTGAACGCGCAGCCGATTCCCACGGCATAG

Coding sequence (CDS) from alignment at tig00000850_pilon:1640603..1642282+

>Ggra3778.t1 ID=Ggra3778.t1|Name=Ggra3778.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1680bp|location=Sequence derived from alignment at tig00000850_pilon:1640603..1642282+ (Gracilaria gracilis GNS1m male)
ATGCAACCGCTTGTCCACGTGCGAATGTCACTGCTCTGCCCGTTATTGGC
CTTGCTGATCGCGCGTGCCGTCGCGTATTACAAGCATCCGTTGTTGTACT
ATGAGCCCCTCCCACCCAAGCTGCCCACCGAGCCGCACGGGCCCGGTGCT
CTTCAGTCGGACAACGATCCCAAccccccgcgaccgctcaccgcccagat
cctagccgcaaccgccccacctccGCTCTCCACGCTTCACCACTTCCTCC
GCTGCCTTCCTCGCCCGGACTACGGCCCGACCGTCACCATCTTCGGTTCG
CCCGAGTATGAAATGCTCCGACAGCGTTCGTATCAGTCCAACCGCTCGGC
GCCCATGGCGTTTGCCGAGGCTCGTACCGAAGGCGATGTGCAGCTACTCT
TGTTCTGCGCAAACGCGCTCCGACTGCCCGTGTGTGCGCGTGCGGGCGGC
CATTCGCTCGTTGGAAAGTCCATGTGTCAGGGCATCGTCATCGACGTCGG
CTTCATCGACCACGTCACGCAGGTGGGCGACGCCAGAGAAGGTTTGTTCG
ACATTGGCCCCGGCGTCACCATGGGCGGCGTGTTGTGGGATCTACATTCA
CACGGCAGATGGTTTGCAAGCGGCGTGTGTCCGGCAGTGGGAATGGGCGG
GTATACGTTGGGCGGTGGACATGGGCCGTATGAAGGGCGATTAGGGTTGG
CCGTCGATCAGGTGGTGGGTGTGCGCATGATCGATCGCTTCGGAAGAGTG
ATTGTGGCCAATGACCATACAAACGCAGAACTGTTCTGGGGTGTGCGTGG
AGCGGGCGGTAGTCAGTTTGGAATCGTGACAAGCTTCCGTGTCAAGACGG
CCAGCGCGGCGCCGTTCGATAAGGCGGTGGTGTTCCGCTTCAAGTGGCCC
ACGTCGGTGGCCGGGCAGTTTCTACACGAGTGGCAGCAGTATGATGAAGA
CGGAGGCGACGTTTGGTTCCGCGTGGAGATGTACCTGGAAAAGGGCGGCG
ATGGAGGAGTGCACGGCTTCGGAGCTTGCTACAATGTGACGGCAGGATTG
GACGAATGCTGGGGACGACTTTCCAGAACAAAGTTCTTCAACTTGCCCGG
ACGCAGGACGATTTTCTGGTCGGAGGCAACCAACGCGCTTGACGTGCATG
CATTCTTCGGACCGGAAGGTCGGTGGGGTCGACAACGAGCAGTGGATATT
AGCAAGGCACTGCGGGTGCGAAGATACCAGGGCGCCAATGCTGGGAATGA
TCGGTTGTATCAATCAACGTTCCTGAAATGGACTCAGCCGCCACCGGCGG
CGTTCTGGCAGACATATGCGGAGTTTTGTGCGAATCCCGCAGGGAGGGAC
AGCGTGGACTTTGTGGTGTGCGAGATGAATTTGTTCAACAATGCGATTGA
CAAAGCACAAAACAATTCGTTTGCTCATCGTGACGCGGAGGTGATCACCC
ACTACATCATAGGCGGGGGGAATTTGGATGACCAGATCTTCATGTATGAA
TGGATGAGAAGACATTTTAGCGCGTACACAAAGGGAGTGTATGTGAATTA
TCCGGAACTGAGACTGAATGACTACGCAACTTCGTACTGGGGGTCGAGCC
TGCCCAGACTTCAGCTTCTGAAAAGCGAGTATGACCCCTTTTTGTTCTTC
TTGAACGCGCAGCCGATTCCCACGGCATAG