Ggra3770.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3770.t1
Unique NameGgra3770.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1570300..1571423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3770Ggra3770Gracilaria gracilis GNS1m malegenetig00000850_pilon 1570300..1571423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3770.t1Ggra3770.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1570300..1571423 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3770.t1.start1Ggra3770.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1570300..1570302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3770.t1.CDS1Ggra3770.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1570300..1570342 +
Ggra3770.t1.CDS2Ggra3770.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1570534..1570730 +
Ggra3770.t1.CDS3Ggra3770.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1570839..1571423 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3770.t1.exon1Ggra3770.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1570300..1570342 +
Ggra3770.t1.exon2Ggra3770.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1570534..1570730 +
Ggra3770.t1.exon3Ggra3770.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1570839..1571423 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3770.t1.intron1Ggra3770.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1570343..1570533 +
Ggra3770.t1.intron2Ggra3770.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1570731..1570838 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3770.t1.stop1Ggra3770.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1571421..1571423 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3770.t1 ID=Ggra3770.t1|Name=Ggra3770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=275bp
MPRSFDVVCGSCAIGKMSLAKFSELIEHDSLASKRLWMDLICVCQFSWTE
RKDEEMKQFKQGFLYELRNRIGSIGTDALLPEEARFIEDVVRTTGGLERI
DESVSKVDANNAWSFVPEDRSMILNLMEESDGVFNVNKTVLKCMRAWFVS
RAEDFYNRLEQRGENVDLYRGTLIPLHMSFGDIATAMRMGREKIESVANK
FGKAHELTLAEMNQLALTLSYDGMPSSMKEAEVLLKDVVKKSEVQFGADH
DISVEAHQILASLMRQRRRSNDAE*
back to top

spliced messenger RNA

>Ggra3770.t1 ID=Ggra3770.t1|Name=Ggra3770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000850_pilon:1570300..1571423+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGGTCTTTCGATGTCGTATGTGGTTCGTGCGCAATCGGTAAGAT
GTCATTGGCCAAGTTTAGCGAGCTGATCGAGCACGATAGCCTCGCCAGTA
AGAGGTTGTGGATGGATTTGATCTGTGTTTGTCAGTTTTCATGGACTGAG
CGGAAGGATGAGGAAATGAAGCAGTTCAAACAGGGGTTTCTGTACGAGCT
ACGCAACCGGATAGGTTCCATTGGAACAGATGCGCTCCTGCCGGAGGAGG
CACGGTTCATCGAGGACGTCGTACGAACGACTGGCGGGCTGGAGAGAATC
GACGAATCCGTGTCGAAAGTGGACGCAAATAACGCGTGGTCGTTTGTGCC
AGAGGACAGAAGCATGATCCTCAACCTGATGGAGGAGAGTGACGGTGTAT
TTAACGTGAATAAGACGGTTCTGAAATGTATGCGCGCATGGTTTGTCAGC
AGGGCGGAAGATTTCTACAATCGCCTGGAACAACGAGGGGAAAACGTCGA
CCTGTACCGTGGTACTCTCATCCCGTTGCACATGAGTTTCGGTGACATTG
CGACTGCAATGCGGATGGGACGTGAAAAGATTGAGAGTGTCGCTAACAAG
TTTGGGAAAGCACATGAACTCACATTAGCTGAGATGAACCAACTAGCGCT
TACGCTGTCCTACGATGGGATGCCATCGAGCATGAAAGAGGCTGAGGTGT
TGTTGAAAGATGTGGTGAAAAAGAGTGAAGTACAGTTCGGGGCGGACCAT
GACATCTCCGTAGAAGCACATCAAATTCTGGCTTCCCTAATGCGGCAGCG
AAGGCGTAGCAATGATGCCGAGTAG
back to top

protein sequence of Ggra3770.t1

>Ggra3770.t1 ID=Ggra3770.t1|Name=Ggra3770.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=275bp
MPRSFDVVCGSCAIGKMSLAKFSELIEHDSLASKRLWMDLICVCQFSWTE
RKDEEMKQFKQGFLYELRNRIGSIGTDALLPEEARFIEDVVRTTGGLERI
DESVSKVDANNAWSFVPEDRSMILNLMEESDGVFNVNKTVLKCMRAWFVS
RAEDFYNRLEQRGENVDLYRGTLIPLHMSFGDIATAMRMGREKIESVANK
FGKAHELTLAEMNQLALTLSYDGMPSSMKEAEVLLKDVVKKSEVQFGADH
DISVEAHQILASLMRQRRRSNDAE*
back to top

mRNA from alignment at tig00000850_pilon:1570300..1571423+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3770.t1 ID=Ggra3770.t1|Name=Ggra3770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1124bp|location=Sequence derived from alignment at tig00000850_pilon:1570300..1571423+ (Gracilaria gracilis GNS1m male)
ATGCCTCGGTCTTTCGATGTCGTATGTGGTTCGTGCGCAATCGGTGCGTA
ACCGAGATACTTCGCCGGCGCGGGGTGACGTCTGGTGGGTCTGTCATACA
TCACATGTCCAAGTTGAGCAATCAACCTCATGACTTCTCACAGACGACCA
CTTTAGACTTCGAATCCACCGCCACAGCTATGGATGATAGGGCTGACAGA
GCAGAGGAGGTATCTTTCTTCATTTCATACACAGGTAAGATGTCATTGGC
CAAGTTTAGCGAGCTGATCGAGCACGATAGCCTCGCCAGTAAGAGGTTGT
GGATGGATTTGATCTGTGTTTGTCAGTTTTCATGGACTGAGCGGAAGGAT
GAGGAAATGAAGCAGTTCAAACAGGGGTTTCTGTACGAGCTACGCAACCG
GATAGGTTCCATTGGAACAGATGCGCTCCTGGTGAGCCGCTAGGACGACT
GGATGATGACACTAGGTAAGATATGGGTACTATGGGAGCTCTTTTCGACT
GTCTATGGCGAGGCGTGGCTTGATGTGCTGTTCACTAAGCCGGAGGAGGC
ACGGTTCATCGAGGACGTCGTACGAACGACTGGCGGGCTGGAGAGAATCG
ACGAATCCGTGTCGAAAGTGGACGCAAATAACGCGTGGTCGTTTGTGCCA
GAGGACAGAAGCATGATCCTCAACCTGATGGAGGAGAGTGACGGTGTATT
TAACGTGAATAAGACGGTTCTGAAATGTATGCGCGCATGGTTTGTCAGCA
GGGCGGAAGATTTCTACAATCGCCTGGAACAACGAGGGGAAAACGTCGAC
CTGTACCGTGGTACTCTCATCCCGTTGCACATGAGTTTCGGTGACATTGC
GACTGCAATGCGGATGGGACGTGAAAAGATTGAGAGTGTCGCTAACAAGT
TTGGGAAAGCACATGAACTCACATTAGCTGAGATGAACCAACTAGCGCTT
ACGCTGTCCTACGATGGGATGCCATCGAGCATGAAAGAGGCTGAGGTGTT
GTTGAAAGATGTGGTGAAAAAGAGTGAAGTACAGTTCGGGGCGGACCATG
ACATCTCCGTAGAAGCACATCAAATTCTGGCTTCCCTAATGCGGCAGCGA
AGGCGTAGCAATGATGCCGAGTAG
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:1570300..1571423+

>Ggra3770.t1 ID=Ggra3770.t1|Name=Ggra3770.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00000850_pilon:1570300..1571423+ (Gracilaria gracilis GNS1m male)
ATGCCTCGGTCTTTCGATGTCGTATGTGGTTCGTGCGCAATCGGTAAGAT
GTCATTGGCCAAGTTTAGCGAGCTGATCGAGCACGATAGCCTCGCCAGTA
AGAGGTTGTGGATGGATTTGATCTGTGTTTGTCAGTTTTCATGGACTGAG
CGGAAGGATGAGGAAATGAAGCAGTTCAAACAGGGGTTTCTGTACGAGCT
ACGCAACCGGATAGGTTCCATTGGAACAGATGCGCTCCTGCCGGAGGAGG
CACGGTTCATCGAGGACGTCGTACGAACGACTGGCGGGCTGGAGAGAATC
GACGAATCCGTGTCGAAAGTGGACGCAAATAACGCGTGGTCGTTTGTGCC
AGAGGACAGAAGCATGATCCTCAACCTGATGGAGGAGAGTGACGGTGTAT
TTAACGTGAATAAGACGGTTCTGAAATGTATGCGCGCATGGTTTGTCAGC
AGGGCGGAAGATTTCTACAATCGCCTGGAACAACGAGGGGAAAACGTCGA
CCTGTACCGTGGTACTCTCATCCCGTTGCACATGAGTTTCGGTGACATTG
CGACTGCAATGCGGATGGGACGTGAAAAGATTGAGAGTGTCGCTAACAAG
TTTGGGAAAGCACATGAACTCACATTAGCTGAGATGAACCAACTAGCGCT
TACGCTGTCCTACGATGGGATGCCATCGAGCATGAAAGAGGCTGAGGTGT
TGTTGAAAGATGTGGTGAAAAAGAGTGAAGTACAGTTCGGGGCGGACCAT
GACATCTCCGTAGAAGCACATCAAATTCTGGCTTCCCTAATGCGGCAGCG
AAGGCGTAGCAATGATGCCGAGTAG
back to top