Ggra3765.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3765.t1
Unique NameGgra3765.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1450966..1451552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog33876.JNXY01000006_gene1316
PFAMsCAP
Max annot lvl201174|Actinobacteria
Evalue3.84e-16
EggNOG OGsCOG2340@1|root,COG2340@2|Bacteria,2GM57@201174|Actinobacteria,4DF21@85008|Micromonosporales
Descriptionprotein with SCP PR1 domains
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3765Ggra3765Gracilaria gracilis GNS1m malegenetig00000850_pilon 1450966..1451552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3765.t1Ggra3765.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1450966..1451552 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3765.t1.stop1Ggra3765.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1450966..1450968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3765.t1.CDS1Ggra3765.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1450966..1451458 -
Ggra3765.t1.CDS2Ggra3765.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1451527..1451552 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3765.t1.exon1Ggra3765.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1450966..1451458 -
Ggra3765.t1.exon2Ggra3765.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1451527..1451552 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3765.t1.intron1Ggra3765.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1451459..1451526 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3765.t1.start1Ggra3765.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1451550..1451552 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3765.t1 ID=Ggra3765.t1|Name=Ggra3765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MLNPIRAVRRGVVRLALRHGPQRHLLVPIYYIFSPPRNPHPLPNLRVAQH
RLLQLTNHLRRRNSLQSVKFSSSLSHIAQRHSEYQGSKAKATHKGRHGFR
LKERLKESKFDFRYAGENVASGQRTVDDAFQSWYRSKGHRRNLLSSRVDL
MGLGVSRGWDGRLYWTQLFASR*
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spliced messenger RNA

>Ggra3765.t1 ID=Ggra3765.t1|Name=Ggra3765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000850_pilon:1450966..1451552- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAACCCTATCCGCGCAGTTCGCCGCGGTGTGGTACGTCTAGCTCT
TCGCCATGGTCCGCAACGACATCTACTCGTACCGATATACTACATATTTT
CACCACCGCGAAACCCGCACCCACTTCCCAATCTTCGCGTTGCACAACAC
CGTCTTCTTCAACTCACCAACCATTTGCGACGACGAAATTCGTTGCAATC
CGTCAAATTCTCCTCATCGCTTTCGCACATTGCACAGAGACATAGTGAAT
ACCAAGGGAGCAAGGCAAAGGCTACGCATAAGGGGCGTCATGGATTTCGT
CTTAAGGAAAGGTTAAAGGAATCCAAGTTCGATTTTCGATATGCTGGCGA
GAATGTCGCGTCGGGGCAGCGCACGGTTGATGATGCCTTCCAGTCTTGGT
ATCGAAGCAAAGGCCATCGACGCAATTTACTTAGCAGCAGGGTGGATTTG
ATGGGTCTAGGTGTTAGCCGAGGCTGGGATGGACGTCTCTATTGGACGCA
ACTCTTCGCAAGTAGATGA
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protein sequence of Ggra3765.t1

>Ggra3765.t1 ID=Ggra3765.t1|Name=Ggra3765.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MLNPIRAVRRGVVRLALRHGPQRHLLVPIYYIFSPPRNPHPLPNLRVAQH
RLLQLTNHLRRRNSLQSVKFSSSLSHIAQRHSEYQGSKAKATHKGRHGFR
LKERLKESKFDFRYAGENVASGQRTVDDAFQSWYRSKGHRRNLLSSRVDL
MGLGVSRGWDGRLYWTQLFASR*
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mRNA from alignment at tig00000850_pilon:1450966..1451552-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3765.t1 ID=Ggra3765.t1|Name=Ggra3765.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp|location=Sequence derived from alignment at tig00000850_pilon:1450966..1451552- (Gracilaria gracilis GNS1m male)
ATGCTGAACCCTATCCGCGCAGTTCGGTAAGCTGGCCGCTGCTTTTTGTT
TTCCATTCATACACGCGCAACTATGCTGACTTCGTTCTCTCCAGCCGCGG
TGTGGTACGTCTAGCTCTTCGCCATGGTCCGCAACGACATCTACTCGTAC
CGATATACTACATATTTTCACCACCGCGAAACCCGCACCCACTTCCCAAT
CTTCGCGTTGCACAACACCGTCTTCTTCAACTCACCAACCATTTGCGACG
ACGAAATTCGTTGCAATCCGTCAAATTCTCCTCATCGCTTTCGCACATTG
CACAGAGACATAGTGAATACCAAGGGAGCAAGGCAAAGGCTACGCATAAG
GGGCGTCATGGATTTCGTCTTAAGGAAAGGTTAAAGGAATCCAAGTTCGA
TTTTCGATATGCTGGCGAGAATGTCGCGTCGGGGCAGCGCACGGTTGATG
ATGCCTTCCAGTCTTGGTATCGAAGCAAAGGCCATCGACGCAATTTACTT
AGCAGCAGGGTGGATTTGATGGGTCTAGGTGTTAGCCGAGGCTGGGATGG
ACGTCTCTATTGGACGCAACTCTTCGCAAGTAGATGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1450966..1451552-

>Ggra3765.t1 ID=Ggra3765.t1|Name=Ggra3765.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000850_pilon:1450966..1451552- (Gracilaria gracilis GNS1m male)
ATGCTGAACCCTATCCGCGCAGTTCGCCGCGGTGTGGTACGTCTAGCTCT
TCGCCATGGTCCGCAACGACATCTACTCGTACCGATATACTACATATTTT
CACCACCGCGAAACCCGCACCCACTTCCCAATCTTCGCGTTGCACAACAC
CGTCTTCTTCAACTCACCAACCATTTGCGACGACGAAATTCGTTGCAATC
CGTCAAATTCTCCTCATCGCTTTCGCACATTGCACAGAGACATAGTGAAT
ACCAAGGGAGCAAGGCAAAGGCTACGCATAAGGGGCGTCATGGATTTCGT
CTTAAGGAAAGGTTAAAGGAATCCAAGTTCGATTTTCGATATGCTGGCGA
GAATGTCGCGTCGGGGCAGCGCACGGTTGATGATGCCTTCCAGTCTTGGT
ATCGAAGCAAAGGCCATCGACGCAATTTACTTAGCAGCAGGGTGGATTTG
ATGGGTCTAGGTGTTAGCCGAGGCTGGGATGGACGTCTCTATTGGACGCA
ACTCTTCGCAAGTAGATGA
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