Ggra3762.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3762.t1
Unique Name	Ggra3762.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1372896..1373846 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3762	Ggra3762	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1372896..1373846 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3762.t1.start1	Ggra3762.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1372896..1372898 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3762.t1.CDS1	Ggra3762.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1372896..1373846 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3762.t1.exon1	Ggra3762.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1372896..1373846 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3762.t1.stop1	Ggra3762.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1373844..1373846 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3762.t1	Ggra3762.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1372896..1373846 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1372896..1373846+
coding sequence from alignment at tig00000850_pilon:1372896..1373846+

mRNA sequence

>Ggra3762.t1 ID=Ggra3762.t1|Name=Ggra3762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=317bp
MLIRVPSFTASNGSVYDERGWKYVHLDEALEMLFVRLLKSLNVTLLPFLE
VAGAWILSVSQARMLIRTVTAASRSYKTVRGNGDEDEEISPVHSYDRYAA
QSSSVREMVNLMRRKSFLSTEHRNSDRLKNVLGLLQTDLKNETVQKLILG
IESHGQTSVELHASTMLPEVFGPLSKIDIEKYLNRKRPKGEWTKSRRIPT
IGTAMAAQSQDVPSAIIRTARDPKMALSERRHTMTKLMTSITLAEHKLIE
ANDLYRAEHARKRWNKLHLGRHLLSAHADAYRAFGDTIRHSNKSQLISAL
NLDFLEKDLDSVLTPV*

spliced messenger RNA

>Ggra3762.t1 ID=Ggra3762.t1|Name=Ggra3762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000850_pilon:1372896..1373846+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGATACGAGTTCCGTCATTCACTGCCAGTAATGGCAGTGTTTACGA
CGAGAGAGGCTGGAAATATGTGCACTTGGACGAAGCCCTAGAGATGCTTT
TTGTTAGACTGCTCAAATCTTTGAACGTGACCCTGCTCCCTTTTCTTGAG
GTCGCTGGTGCATGGATTTTAAGTGTCTCGCAAGCTCGAATGCTGATCCG
AACGGTTACCGCAGCATCAAGATCGTATAAAACTGTCCGAGGAAACGGAG
ACGAAGATGAGGAAATTAGCCCTGTTCACAGCTACGACAGATATGCCGCT
CAGTCATCATCTGTTCGGGAGATGGTCAACCTTATGCGCAGGAAATCTTT
TCTTTCTACTGAGCATCGCAACAGCGATAGGCTTAAGAATGTTTTGGGGC
TCTTGCAGACTGATTTGAAGAATGAGACGGTTCAAAAGTTAATTCTAGGC
ATTGAGAGCCACGGTCAAACAAGTGTTGAGTTGCACGCCTCTACAATGCT
TCCGGAAGTATTTGGACCGTTATCCAAGATTGATATTGAGAAGTACCTCA
ATAGGAAGCGCCCGAAAGGAGAATGGACGAAATCGAGGCGTATTCCTACG
ATTGGCACAGCAATGGCCGCACAAAGTCAAGATGTTCCAAGCGCAATTAT
TAGGACAGCGAGAGACCCCAAGATGGCTCTATCTGAACGTCGTCACACAA
TGACGAAGCTCATGACGTCCATTACTTTGGCAGAGCATAAGTTGATCGAA
GCAAATGACTTATATAGAGCTGAACACGCTCGTAAGAGGTGGAATAAGCT
ACATTTAGGTCGACATCTTTTATCAGCTCACGCAGATGCGTATCGAGCAT
TCGGAGATACAATCAGGCATTCCAACAAAAGCCAGCTGATATCTGCTTTG
AATCTTGATTTCTTGGAAAAGGATCTTGATTCAGTGCTTACTCCTGTATA
A

protein sequence of Ggra3762.t1

>Ggra3762.t1 ID=Ggra3762.t1|Name=Ggra3762.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=317bp
MLIRVPSFTASNGSVYDERGWKYVHLDEALEMLFVRLLKSLNVTLLPFLE
VAGAWILSVSQARMLIRTVTAASRSYKTVRGNGDEDEEISPVHSYDRYAA
QSSSVREMVNLMRRKSFLSTEHRNSDRLKNVLGLLQTDLKNETVQKLILG
IESHGQTSVELHASTMLPEVFGPLSKIDIEKYLNRKRPKGEWTKSRRIPT
IGTAMAAQSQDVPSAIIRTARDPKMALSERRHTMTKLMTSITLAEHKLIE
ANDLYRAEHARKRWNKLHLGRHLLSAHADAYRAFGDTIRHSNKSQLISAL
NLDFLEKDLDSVLTPV*

mRNA from alignment at tig00000850_pilon:1372896..1373846+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3762.t1 ID=Ggra3762.t1|Name=Ggra3762.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000850_pilon:1372896..1373846+ (Gracilaria gracilis GNS1m male)
ATGCTGATACGAGTTCCGTCATTCACTGCCAGTAATGGCAGTGTTTACGA
CGAGAGAGGCTGGAAATATGTGCACTTGGACGAAGCCCTAGAGATGCTTT
TTGTTAGACTGCTCAAATCTTTGAACGTGACCCTGCTCCCTTTTCTTGAG
GTCGCTGGTGCATGGATTTTAAGTGTCTCGCAAGCTCGAATGCTGATCCG
AACGGTTACCGCAGCATCAAGATCGTATAAAACTGTCCGAGGAAACGGAG
ACGAAGATGAGGAAATTAGCCCTGTTCACAGCTACGACAGATATGCCGCT
CAGTCATCATCTGTTCGGGAGATGGTCAACCTTATGCGCAGGAAATCTTT
TCTTTCTACTGAGCATCGCAACAGCGATAGGCTTAAGAATGTTTTGGGGC
TCTTGCAGACTGATTTGAAGAATGAGACGGTTCAAAAGTTAATTCTAGGC
ATTGAGAGCCACGGTCAAACAAGTGTTGAGTTGCACGCCTCTACAATGCT
TCCGGAAGTATTTGGACCGTTATCCAAGATTGATATTGAGAAGTACCTCA
ATAGGAAGCGCCCGAAAGGAGAATGGACGAAATCGAGGCGTATTCCTACG
ATTGGCACAGCAATGGCCGCACAAAGTCAAGATGTTCCAAGCGCAATTAT
TAGGACAGCGAGAGACCCCAAGATGGCTCTATCTGAACGTCGTCACACAA
TGACGAAGCTCATGACGTCCATTACTTTGGCAGAGCATAAGTTGATCGAA
GCAAATGACTTATATAGAGCTGAACACGCTCGTAAGAGGTGGAATAAGCT
ACATTTAGGTCGACATCTTTTATCAGCTCACGCAGATGCGTATCGAGCAT
TCGGAGATACAATCAGGCATTCCAACAAAAGCCAGCTGATATCTGCTTTG
AATCTTGATTTCTTGGAAAAGGATCTTGATTCAGTGCTTACTCCTGTATA
A

Coding sequence (CDS) from alignment at tig00000850_pilon:1372896..1373846+

>Ggra3762.t1 ID=Ggra3762.t1|Name=Ggra3762.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00000850_pilon:1372896..1373846+ (Gracilaria gracilis GNS1m male)
ATGCTGATACGAGTTCCGTCATTCACTGCCAGTAATGGCAGTGTTTACGA
CGAGAGAGGCTGGAAATATGTGCACTTGGACGAAGCCCTAGAGATGCTTT
TTGTTAGACTGCTCAAATCTTTGAACGTGACCCTGCTCCCTTTTCTTGAG
GTCGCTGGTGCATGGATTTTAAGTGTCTCGCAAGCTCGAATGCTGATCCG
AACGGTTACCGCAGCATCAAGATCGTATAAAACTGTCCGAGGAAACGGAG
ACGAAGATGAGGAAATTAGCCCTGTTCACAGCTACGACAGATATGCCGCT
CAGTCATCATCTGTTCGGGAGATGGTCAACCTTATGCGCAGGAAATCTTT
TCTTTCTACTGAGCATCGCAACAGCGATAGGCTTAAGAATGTTTTGGGGC
TCTTGCAGACTGATTTGAAGAATGAGACGGTTCAAAAGTTAATTCTAGGC
ATTGAGAGCCACGGTCAAACAAGTGTTGAGTTGCACGCCTCTACAATGCT
TCCGGAAGTATTTGGACCGTTATCCAAGATTGATATTGAGAAGTACCTCA
ATAGGAAGCGCCCGAAAGGAGAATGGACGAAATCGAGGCGTATTCCTACG
ATTGGCACAGCAATGGCCGCACAAAGTCAAGATGTTCCAAGCGCAATTAT
TAGGACAGCGAGAGACCCCAAGATGGCTCTATCTGAACGTCGTCACACAA
TGACGAAGCTCATGACGTCCATTACTTTGGCAGAGCATAAGTTGATCGAA
GCAAATGACTTATATAGAGCTGAACACGCTCGTAAGAGGTGGAATAAGCT
ACATTTAGGTCGACATCTTTTATCAGCTCACGCAGATGCGTATCGAGCAT
TCGGAGATACAATCAGGCATTCCAACAAAAGCCAGCTGATATCTGCTTTG
AATCTTGATTTCTTGGAAAAGGATCTTGATTCAGTGCTTACTCCTGTATA
A